Handbook of Deep-Sea Hydrothermal Vent Fauna
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Forty Years of Tropical Deep-Sea Benthos and the Taxonomy of Nine Families of Brachyuran Crabs
FORTY YEARS OF TROPICAL DEEP-SEA BENTHOS AND THE TAXONOMY OF NINE FAMILIES OF BRACHYURAN CRABS Peter (Pedro) Castro Biological Sciences Department California State Polytechnic University, Pomona, USA TRAPEZIOIDEA: TRAPEZIIDAE & TETRALIIDAE Castro, P., 1997. Trapeziid crabs of New Caledonia, eastern Australia, and the Coral Sea. Le benthos des fonds meubles des lagons de Nouvelle-Calédonie (B. Richer de Forges, ed.). Ètudes et Théses, 3: 59-107. NEW SPECIES – 1 NEW RECORDS – 3 Castro, P., P.K.L. Ng & S.T. Ahyong, 2004 Phylogeny and systematics of the Trapeziidae Miers, 1886, with the description of a new family. Zootaxa, 643: 1-70. NEW FAMILY – 1 NEOTYPE - 1 Castro, P., 2005. A new species of Hexagonalia from the Solomon Islands. Proceedings of the Biological Society of Washington, 118: 539-542. NEW SPECIES – 1 Castro, P., 2009. Trapeziidae and Tetraliidae of the Philippines (PANGLAO 2004), New Guinea, and Vanuatu (SANTO 2006). Raffles Bulletin of Zoology, Supplement 20: 271-281. NEW RECORDS – 18 Castro, P., 2013. Brachyuran crabs (Crustacea, Brachyura:) of the MAINBAZA, MIRIKI, and ATIMO VATAE expeditions to the Mozambique Channel and Madagascar. In: Ahyong, S.T, Chan, T.-Y, Corbari, L. & Ng, P.K.L. (eds.). Tropical Deep Sea Benthos, 27: 437-466). NEW RECORD - 1 Sphenomerides PALICOIDEA: PALICIDAE & CROSSOTONOTIDAE Castro, P., 2000. Crustacea Decapoda: A revision of the Indo-west Pacific species of palicid crabs (Brachyura Palicidae). In: Résultats des Campagnes MUSORSTOM (A. Crosnier, ed.), vol. 21. Mémoires du Muséum National d'Histoire Naturelle, 184: 437- 610. NEW GENERA – 4 (= 50% of Palicidae) NEW SPECIES – 15 (= 24% of Palicidae; 38% of Indo-West Pacific species) NEW RECORDS – 51 Castro, P., 2010. -
Part I. an Annotated Checklist of Extant Brachyuran Crabs of the World
THE RAFFLES BULLETIN OF ZOOLOGY 2008 17: 1–286 Date of Publication: 31 Jan.2008 © National University of Singapore SYSTEMA BRACHYURORUM: PART I. AN ANNOTATED CHECKLIST OF EXTANT BRACHYURAN CRABS OF THE WORLD Peter K. L. Ng Raffles Museum of Biodiversity Research, Department of Biological Sciences, National University of Singapore, Kent Ridge, Singapore 119260, Republic of Singapore Email: [email protected] Danièle Guinot Muséum national d'Histoire naturelle, Département Milieux et peuplements aquatiques, 61 rue Buffon, 75005 Paris, France Email: [email protected] Peter J. F. Davie Queensland Museum, PO Box 3300, South Brisbane, Queensland, Australia Email: [email protected] ABSTRACT. – An annotated checklist of the extant brachyuran crabs of the world is presented for the first time. Over 10,500 names are treated including 6,793 valid species and subspecies (with 1,907 primary synonyms), 1,271 genera and subgenera (with 393 primary synonyms), 93 families and 38 superfamilies. Nomenclatural and taxonomic problems are reviewed in detail, and many resolved. Detailed notes and references are provided where necessary. The constitution of a large number of families and superfamilies is discussed in detail, with the positions of some taxa rearranged in an attempt to form a stable base for future taxonomic studies. This is the first time the nomenclature of any large group of decapod crustaceans has been examined in such detail. KEY WORDS. – Annotated checklist, crabs of the world, Brachyura, systematics, nomenclature. CONTENTS Preamble .................................................................................. 3 Family Cymonomidae .......................................... 32 Caveats and acknowledgements ............................................... 5 Family Phyllotymolinidae .................................... 32 Introduction .............................................................................. 6 Superfamily DROMIOIDEA ..................................... 33 The higher classification of the Brachyura ........................ -
Crustacean Diversity of Ildırı Bay (Izmir, Turkey)
DOI: 10.22120/jwb.2020.131461.1164 Special issue 41-49 (2020) Challenges for Biodiversity and Conservation in the Mediterranean Region (http://www.wildlife-biodiversity.com/) Research Article Crustacean diversity of Ildırı Bay (Izmir, Turkey) Introduction Murat Ozaydinli1*, Kemal Can Bizsel2 1Ordu University, Fatsa Faculty of Marine Crustaceans are a critical element of the marine Science, Department of Fisheries Technology benthic ecosystem in terms of macrofauna Engineering, 52400, Ordu, Turkey, diversity and impact assessment. Many studies 2 Dokuz Eylül University, Institute of Marine have been conducted on crustacean species in Sciences and Technology, 35340, Izmir, Turkey the Aegean Sea (Geldiay and Kocataş 1970, Geldiay and Kocataş 1973, Katağan 1982, *Email: [email protected] Ergen et al. 1988, Kırkım 1998, Katağan et al. Received: 22 July 2020 / Revised: 16 September 2020 / Accepted: 2001, Koçak et al. 2001, Ateş 2003, Sezgin 22 September 2020 / Published online: 21 October 2020. Ministry 2003, Yokeş et al. 2007, Anastasiadou et al. of Sciences, Research, and Technology, Arak University, Iran. 2020). These studies and more have been Abstract compiled by Bakır et al. (2014), who has given In this study, the crustacean diversity in Ildırı a checklist. A total of 1028 Crustacean species Bay, which is characterized by a high density of was reported along the Aegean Sea coast of aquaculture activity and tourism, was Turkey Bakır et al. (2014). investigated. Sampling was carried out by box- The Ildırı Bay is characterized by a high corer during four seasonal cruises (April, July, intensity of aquaculture and tourism activities November 2010, and February 2011) at eight (Demirel 2010, Bengil and Bizsel 2014). -
Basal Position of Two New Complete Mitochondrial Genomes of Parasitic
Hua et al. Parasites & Vectors (2018) 11:628 https://doi.org/10.1186/s13071-018-3162-4 RESEARCH Open Access Basal position of two new complete mitochondrial genomes of parasitic Cymothoida (Crustacea: Isopoda) challenges the monophyly of the suborder and phylogeny of the entire order Cong J. Hua1,2, Wen X. Li1, Dong Zhang1,2, Hong Zou1, Ming Li1, Ivan Jakovlić3, Shan G. Wu1 and Gui T. Wang1,2* Abstract Background: Isopoda is a highly diverse order of crustaceans with more than 10,300 species, many of which are parasitic. Taxonomy and phylogeny within the order, especially those of the suborder Cymothoida Wägele, 1989, are still debated. Mitochondrial (mt) genomes are a useful tool for phylogenetic studies, but their availability for isopods is very limited. To explore these phylogenetic controversies on the mt genomic level and study the mt genome evolution in Isopoda, we sequenced mt genomes of two parasitic isopods, Tachaea chinensis Thielemann, 1910 and Ichthyoxenos japonensis Richardson, 1913, belonging to the suborder Cymothoida, and conducted comparative and phylogenetic mt genomic analyses across Isopoda. Results: The complete mt genomes of T. chinensis and I. japonensis were 14,616 bp and 15,440 bp in size, respectively, with the A+T content higher than in other isopods (72.7 and 72.8%, respectively). Both genomes code for 13 protein-coding genes, 21 transfer RNA genes (tRNAs), 2 ribosomal RNA genes (rRNAs), and possess a control region (CR). Both are missing a gene from the complete tRNA set: T. chinensis lacks trnS1 and I. japonensis lacks trnI. Both possess unique gene orders among isopods. -
The Lower Bathyal and Abyssal Seafloor Fauna of Eastern Australia T
O’Hara et al. Marine Biodiversity Records (2020) 13:11 https://doi.org/10.1186/s41200-020-00194-1 RESEARCH Open Access The lower bathyal and abyssal seafloor fauna of eastern Australia T. D. O’Hara1* , A. Williams2, S. T. Ahyong3, P. Alderslade2, T. Alvestad4, D. Bray1, I. Burghardt3, N. Budaeva4, F. Criscione3, A. L. Crowther5, M. Ekins6, M. Eléaume7, C. A. Farrelly1, J. K. Finn1, M. N. Georgieva8, A. Graham9, M. Gomon1, K. Gowlett-Holmes2, L. M. Gunton3, A. Hallan3, A. M. Hosie10, P. Hutchings3,11, H. Kise12, F. Köhler3, J. A. Konsgrud4, E. Kupriyanova3,11,C.C.Lu1, M. Mackenzie1, C. Mah13, H. MacIntosh1, K. L. Merrin1, A. Miskelly3, M. L. Mitchell1, K. Moore14, A. Murray3,P.M.O’Loughlin1, H. Paxton3,11, J. J. Pogonoski9, D. Staples1, J. E. Watson1, R. S. Wilson1, J. Zhang3,15 and N. J. Bax2,16 Abstract Background: Our knowledge of the benthic fauna at lower bathyal to abyssal (LBA, > 2000 m) depths off Eastern Australia was very limited with only a few samples having been collected from these habitats over the last 150 years. In May–June 2017, the IN2017_V03 expedition of the RV Investigator sampled LBA benthic communities along the lower slope and abyss of Australia’s eastern margin from off mid-Tasmania (42°S) to the Coral Sea (23°S), with particular emphasis on describing and analysing patterns of biodiversity that occur within a newly declared network of offshore marine parks. Methods: The study design was to deploy a 4 m (metal) beam trawl and Brenke sled to collect samples on soft sediment substrata at the target seafloor depths of 2500 and 4000 m at every 1.5 degrees of latitude along the western boundary of the Tasman Sea from 42° to 23°S, traversing seven Australian Marine Parks. -
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ripa #»: iw^m^o^fithont'Domm'mt B:^^ y b^ -^^m S8: 84-88 (2003) Japanese Journal of BenthoUtgy MW>WM. y ^y insist" S n'^x ^ y 3 ^/;t U X h'- Shinkaia crosnieri Distribution and Population Structure of the Galatheid Crab Shinkaia crosnieri (Decapoda: Anomura: Galatheidae) in the Southern Okinawa Trough mmm^mm^y^~mmmm• mmm^m. Tise-ooeiw^ummmmmMMm2-1 s Shinji TSUCHIDA*, Yoshihiro FUJIWARA and Katsunori FUJIKURA Marine Ecosystems Research Department, Japan Marine Science and Technology Center, 2-15 Natstishima-cho, Yokosu- ka-shi, Kanagawa 236-0061, Japan Abstract: The spatial distribution around hydrothermal vents, population structure, and relative growth parametei^ of the galatheid crab Shinkaia crosnieri were examined. Surveys were done by the Shinkai 2000 on the Hatoma and Dai-yon Yonaguni KnoUs in the southern Okinawa Trough. On the Hatoma Knoll, S. crosnieri inhabited areas (temp. 4.(>-6.2°C) about 0.2-2 m away from the active vent (temp. 30f C). In the outer area of the habitat of S. crosnieri (.ew. 3.M.rc,. dense bei .r Ba„ymo,,o,u. mu.eU occjd and aggregations cf ^/v,V„c»^ sM„p were observed. In this survey, 248 specimens of S. crosnieri were collected. Small, probably just post-metamorphic juveniles and large, mature aduL eo-orurred. Chelipeds of males were proportionally largir tl^ *ose of ^malL. whUe abdomens of females were proportionally larger than those of males. Larger chelip«is in males are thought to have evolved through male-male competition for females, and wider abdomens in females are thought to be related to the attachment of fertEized eggs to the abdominal appendages. -
Annotated Checklist of New Zealand Decapoda (Arthropoda: Crustacea)
Tuhinga 22: 171–272 Copyright © Museum of New Zealand Te Papa Tongarewa (2011) Annotated checklist of New Zealand Decapoda (Arthropoda: Crustacea) John C. Yaldwyn† and W. Richard Webber* † Research Associate, Museum of New Zealand Te Papa Tongarewa. Deceased October 2005 * Museum of New Zealand Te Papa Tongarewa, PO Box 467, Wellington, New Zealand ([email protected]) (Manuscript completed for publication by second author) ABSTRACT: A checklist of the Recent Decapoda (shrimps, prawns, lobsters, crayfish and crabs) of the New Zealand region is given. It includes 488 named species in 90 families, with 153 (31%) of the species considered endemic. References to New Zealand records and other significant references are given for all species previously recorded from New Zealand. The location of New Zealand material is given for a number of species first recorded in the New Zealand Inventory of Biodiversity but with no further data. Information on geographical distribution, habitat range and, in some cases, depth range and colour are given for each species. KEYWORDS: Decapoda, New Zealand, checklist, annotated checklist, shrimp, prawn, lobster, crab. Contents Introduction Methods Checklist of New Zealand Decapoda Suborder DENDROBRANCHIATA Bate, 1888 ..................................... 178 Superfamily PENAEOIDEA Rafinesque, 1815.............................. 178 Family ARISTEIDAE Wood-Mason & Alcock, 1891..................... 178 Family BENTHESICYMIDAE Wood-Mason & Alcock, 1891 .......... 180 Family PENAEIDAE Rafinesque, 1815 .................................. -
Evolutionary Transformations of the Reproductive System in Eubrachyura (Crustacea: Decapoda)
EVOLUTIONARY TRANSFORMATIONS OF THE REPRODUCTIVE SYSTEM IN EUBRACHYURA (CRUSTACEA: DECAPODA) DISSERTATION zur Erlangung des akademischen Grades Doctor rerum naturalium (Dr. rer. nat.) eingereicht an der Lebenswissenschaftlichen Fakultät der Humboldt-Universität zu Berlin von M. Sc. Katja, Kienbaum, geb. Jaszkowiak Präsidentin der Humboldt-Universität zu Berlin Prof. Dr.-Ing. Dr. Sabine Kunst Dekan der Lebenswissenschaftlichen Fakultät der Humboldt-Universität zu Berlin Prof. Dr. Bernhard Grimm Gutachter 1. Prof. Dr. Gerhard Scholtz 2. PD Dr. Thomas Stach 3. PD Dr. Christian Wirkner Tag der mündlichen Prüfung: 03.05.2019 CONTENT C ONTENT A BSTRACT v i - vii Z USAMMENFASSUNG viii - x 1 | INTRODUCTION 1 - 11 1.1 | THE BRACHYURA 1 1.1.1 | OBJECT OF INVESTIGATION 1 - 5 1.1.2 | WHAT WE (DO NOT) KNOW ABOUT THE PHYLOGENY OF EUBRACHURA 6 - 10 1. 2 |MS AI 10 - 11 2 | THE MORPHOLOGY OF THE MALE AND FEMALE REPRODUCTIVE SYSTEM IN TWO 12 - 34 SPECIES OF SPIDER CRABS (DECAPODA: BRACHYURA: MAJOIDEA) AND THE ISSUE OF THE VELUM IN MAJOID REPRODUCTION. 2.1 | INTRODUCTION 13 - 14 2.2 | MATERIAL AND METHODS 14 - 16 2.3 | RESULTS 16 - 23 2.4 | DISCUSSION 24 - 34 3 | THE MORPHOLOGY OF THE REPRODUCTIVE SYSTEM IN THE CRAB 35 - 51 PERCNON GIBBESI (DECAPODA: BRACHYURA: GRAPSOIDEA) REVEALS A NEW COMBINATION OF CHARACTERS. 3.1 | INTRODUCTION 36 - 37 3.2 | MATERIAL AND METHODS 37 - 38 3.3 | RESULTS 39 - 46 3.4 | DISCUSSION 46 - 51 4 | THE REPRODUCTIVE SYSTEM OF LIMNOPILOS NAIYANETRI INDICATES A 52 - 64 THORACOTREME AFFILIATION OF HYMENOSOMATIDAE (DECAPODA, EUBRACHYURA). -
Comparative Population Structure of Two Dominant Species, Shinkaia Crosnieri
Comparative population structure of two dominant species, Shinkaia crosnieri (Munidopsidae: Shinkaia) and Bathymodiolus platifrons (Mytilidae: Bathymodiolus), inhabiting both deep-sea vent and cold seep inferred from mitochondrial multi-genes Yanjun Shen1,2,*, Qi Kou3,*, Weitao Chen1,2, Shunping He1, Mei Yang3, Xinzheng Li3 & Xiaoni Gan1 1The Key Laboratory of Aquatic Biodiversity and Conservation of the Chinese Academy of Sciences, Institute of Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, Hubei, China 2University of the Chinese Academy of Sciences, Beijing 100039, China 3Institute of Oceanology, Chinese Academy of Sciences, Qingdao 266071, China Keywords Abstract Chemosynthetic fauna, environmental heterogeneity, genetic diversity, genetic Deep-sea hydrothermal vents and cold seeps, limited environments without isolation, population distribution patterns. sunlight, are two types of extreme habitat for marine organisms. The differences between vents and cold seeps may facilitate genetic isolation and produce popu- Correspondence lation heterogeneity. However, information on such chemosynthetic fauna taxa Xiaoni Gan, The Key Laboratory of Aquatic is rare, especially regarding the population diversity of species inhabiting both Biodiversity and Conservation of the Chinese vents and cold seeps. In this study, three mitochondrial DNA fragments (the Academy of Sciences, Institute of cytochrome c oxidase submit I (COI), cytochrome b gene (Cytb), and 16S) Hydrobiology, Chinese Academy of Sciences, Wuhan 430072, Hubei, China were concatenated as a mitochondrial concatenated dataset (MCD) to examine Tel: 027-68780089; the genetic diversity, population structure, and demographic history of Shinkaia Fax: 027-68780071; crosnieri and Bathymodiolus platifrons. The genetic diversity differences between E-mail: [email protected] vent and seep populations were statistically significant for S. crosnieri but not and for B. -
Systema Brachyurorum: Part I
THE RAFFLES BULLETIN OF ZOOLOGY 2008 17: 1–286 Date of Publication: 31 Jan.2008 © National University of Singapore SYSTEMA BRACHYURORUM: PART I. AN ANNOTATED CHECKLIST OF EXTANT BRACHYURAN CRABS OF THE WORLD Peter K. L. Ng Raffles Museum of Biodiversity Research, Department of Biological Sciences, National University of Singapore, Kent Ridge, Singapore 119260, Republic of Singapore Email: [email protected] Danièle Guinot Muséum national d'Histoire naturelle, Département Milieux et peuplements aquatiques, 61 rue Buffon, 75005 Paris, France Email: [email protected] Peter J. F. Davie Queensland Museum, PO Box 3300, South Brisbane, Queensland, Australia Email: [email protected] ABSTRACT. – An annotated checklist of the extant brachyuran crabs of the world is presented for the first time. Over 10,500 names are treated including 6,793 valid species and subspecies (with 1,907 primary synonyms), 1,271 genera and subgenera (with 393 primary synonyms), 93 families and 38 superfamilies. Nomenclatural and taxonomic problems are reviewed in detail, and many resolved. Detailed notes and references are provided where necessary. The constitution of a large number of families and superfamilies is discussed in detail, with the positions of some taxa rearranged in an attempt to form a stable base for future taxonomic studies. This is the first time the nomenclature of any large group of decapod crustaceans has been examined in such detail. KEY WORDS. – Annotated checklist, crabs of the world, Brachyura, systematics, nomenclature. CONTENTS Preamble .................................................................................. 3 Family Cymonomidae .......................................... 32 Caveats and acknowledgements ............................................... 5 Family Phyllotymolinidae .................................... 32 Introduction .............................................................................. 6 Superfamily DROMIOIDEA ..................................... 33 The higher classification of the Brachyura ........................ -
Crustacea, Decapoda, Anomura) from Hydrothermal Systems in the West Pacific Océan: Bismarck Archipelago and Okinawa Trough
New Galatheoidea (Crustacea, Decapoda, Anomura) from hydrothermal Systems in the West Pacific Océan: Bismarck Archipelago and Okinawa Trough Keiji BABA Kumamoto University, Faculty of Education Kumamoto 860-8555 (Japan) [email protected] Austin B. WILLIAMS National Marine Fisheries Service Systematics Laboratory National Muséum of Natural History, Smithsonian Institution Washington D.C. 20560 (U.S.A.) [email protected] Baba K. & Williams A. B. 1998. — New Galatheoidea (Crustacea, Decapoda, Anomura) from hydrothermal Systems in the West Pacific Océan: Bismarck Archipelago and Okinawa Trough. Zoosystema 20 (2): 143-156. ABSTRACT Two anomuran decapod crustaceans of the superfamily Galatheoidea that are new to science are described from hydrothermally active areas of the western Pacific Océan. Uroptychus edisonicus n.sp., family Chirostylidae, from a vol- canic crater on Edison Seamount near Lihir Island, Bismarck Archipelago, Papua New Guinea, is the third species of the genus known to occur in hydrothermally active areas, both of the others coming from the North Fiji Basin. The new species is more similar to non-hydrothermal congeners from the Banda Sea and the central North Pacific Océan than to those known KEYWORDS from vent areas. Shinkaia crosnieri n.g. n.sp., family Galatheidae, from active hydrothermal Systems, hydrothermal areas in the Okinawa Trough and Edison Seamount is placed West Pacific Océan, in the monotypic Shinkaiinae n. subfam. having similarities to the Chirostylidae, Uroptychus, Munidopsinae, but with distinctive characters of its own including carapace Galatheidae, shape and ornamentation, very short (or reduced) epipods on the third Shinkaiinae, maxillipeds, features of thoracic sternum, legs, and dense ventral mat of Shinkaia, biogeography. -
A Phylogenomic Framework, Evolutionary Timeline, and Genomic Resources for Comparative Studies of Decapod Crustaceans
bioRxiv preprint doi: https://doi.org/10.1101/466540; this version posted November 9, 2018. The copyright holder has placed this preprint (which was not certified by peer review) in the Public Domain. It is no longer restricted by copyright. Anyone can legally share, reuse, remix, or adapt this material for any purpose without crediting the original authors. A PHYLOGENOMIC FRAMEWORK, EVOLUTIONARY TIMELINE, AND GENOMIC RESOURCES FOR COMPARATIVE STUDIES OF DECAPOD CRUSTACEANS Joanna M. Wolfe1,2,3,*, Jesse W. Breinholt4,5, Keith A. Crandall6,7, Alan R. Lemmon8, Emily Moriarty Lemmon9, Laura E. Timm10, Mark E. Siddall1, and Heather D. Bracken-Grissom10,* 1 Division of Invertebrate Zoology & Sackler Institute of Comparative Genomics, American Museum of Natural History, New York, NY 10024, USA 2 Department of Earth, Atmospheric & Planetary Sciences, Massachusetts Institute of Technology, Cambridge, MA 02139, USA 3 Museum of Comparative Zoology & Department of Organismic & Evolutionary Biology, Harvard University, Cambridge, MA 02138, USA 4 Florida Museum of Natural History, University of Florida, Gainesville, FL 32611, USA 5 RAPiD Genomics, Gainesville, FL 32601, USA 6 Computational Biology Institute, The George Washington University, Ashburn, VA 20147, USA 7 Department of Invertebrate Zoology, National Museum of Natural History, Smithsonian Institution, Washington, DC 20012, USA 8 Department of Scientific Computing, Florida State University, Dirac Science Library, Tallahassee, FL 32306, USA 9 Department of Biological Science, Florida State University, Tallahassee, FL 32306, USA 10 Department of Biological Sciences, Florida International University, North Miami, FL 33181, USA * corresponding authors: [email protected] and [email protected] ABSTRACT Comprising over 15,000 living species, decapods (crabs, shrimp, and lobsters) are the most instantly recognizable crustaceans, representing a considerable global food source.