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Biosystems Diversity
ISSN 2519-8521 (Print) Regulatory Mechanisms ISSN 2520-2588 (Online) Regul. Mech. Biosyst., 8(4), 532–539 in Biosystems doi: 10.15421/021782 New finding of green algae with potential for algal biotechnology, Chlorococcum oleofaciens and its molecular investigation Y. I. Maltsev, T. V. Konovalenko Bogdan Khmelnitskiy Melitopol State Pedagogical University, Melitopol, Ukraine Article info Maltsev, Y. I., & Konovalenko, T. V. (2017). New finding of green algae with potential for algal biotechnology, Received 14.09.2017 Chlorococcum oleofaciens and its molecular investigation. Regulatory Mechanisms in Biosystems, 8(4), 532–539. Received in revised form doi:10.15421/021782 28.10.2017 Accepted 03.11.2017 The practice of soil algology shows that algae from the order Chlamydomonadales are among the most poorly studied and difficult to identify due to the high heterogeneity of their morphology and ultrastructure. Only the involvement of Bogdan Khmelnitskiy Melitopol molecular genetic methods usually makes it possible to determine their taxonomic status with high accuracy. At the same State Pedagogical University, time, in the algae flora of Ukraine there are more than 250 species from the order Chlamydomonadales, the status of which Getmanska st., 20, Melitopol, in most cases is established exclusively on the basis of light microscopy. This work is devoted to the study of the Zaporizhia region, 72312, Ukraine. biotechnologically promising green alga Chlorococcum oleofaciens, taking into account the modern understanding of its Tel.: +38-096-548-34-36 taxonomic status. Two new strains of this species, separated from samples of forest litter and oak forest soil (the Samara E-mail: [email protected] Forest, Dnipropetrovsk region), are described. -
From Algae to Flowering Plants
PP62CH23-Popper ARI 4 April 2011 14:20 Evolution and Diversity of Plant Cell Walls: From Algae to Flowering Plants Zoe¨ A. Popper,1 Gurvan Michel,3,4 Cecile´ Herve,´ 3,4 David S. Domozych,5 William G.T. Willats,6 Maria G. Tuohy,2 Bernard Kloareg,3,4 and Dagmar B. Stengel1 1Botany and Plant Science, and 2Molecular Glycotechnology Group, Biochemistry, School of Natural Sciences, National University of Ireland, Galway, Ireland; email: [email protected] 3CNRS and 4UPMC University Paris 6, UMR 7139 Marine Plants and Biomolecules, Station Biologique de Roscoff, F-29682 Roscoff, Bretagne, France 5Department of Biology and Skidmore Microscopy Imaging Center, Skidmore College, Saratoga Springs, New York 12866 6Department of Plant Biology and Biochemistry, Faculty of Life Sciences, University of Copenhagen, Bulowsvej,¨ 17-1870 Frederiksberg, Denmark Annu. Rev. Plant Biol. 2011. 62:567–90 Keywords First published online as a Review in Advance on xyloglucan, mannan, arabinogalactan proteins, genome, environment, February 22, 2011 multicellularity The Annual Review of Plant Biology is online at plant.annualreviews.org Abstract This article’s doi: All photosynthetic multicellular Eukaryotes, including land plants 10.1146/annurev-arplant-042110-103809 by Universidad Veracruzana on 01/08/14. For personal use only. and algae, have cells that are surrounded by a dynamic, complex, Copyright c 2011 by Annual Reviews. carbohydrate-rich cell wall. The cell wall exerts considerable biologi- All rights reserved cal and biomechanical control over individual cells and organisms, thus Annu. Rev. Plant Biol. 2011.62:567-590. Downloaded from www.annualreviews.org 1543-5008/11/0602-0567$20.00 playing a key role in their environmental interactions. -
The Charophytes (Charophyta) Locality in the Milkha Stream, Lower Jordan, Israel
Natural Resources and Conservation 3(2): 19-30, 2015 http://www.hrpub.org DOI: 10.13189/nrc.2015.030201 The Charophytes (Charophyta) Locality in the Milkha Stream, Lower Jordan, Israel Sophia Barinova1,*, Roman Romanov2 1Institute of Evolution, University of Haifa, Israel 2Central Siberian Botanical Garden of the Siberian Branch of the Russian Academy of Sciences, Russia Copyright © 2015 by authors, all rights reserved. Authors agree that this article remains permanently open access under the terms of the Creative Commons Attribution License 4.0 International License Abstract First study of new locality the Milkha Stream, revealed 14 charophyte species (16 with ifraspecific variety) the Lower Jordan River tributary, with charophyte algae, in that known for Israel [3,4] from references and our studies. semi-arid region of Israel has been implemented for Last year research in Israel and Eastern Mediterranean let us revealing of algal diversity and ecological assessment of the too includes few new localities, algal diversity of which has water object environment by bio-indication methods. been never studied before [5-10]. Altogether forty seven species from five taxonomic The charophytes prefer alkaline water environment which Divisions of algae and cyanobacteria including one of them forms on the carbonates that are very distributed in studied macro-algae Chara gymnophylla A. Braun were revealed in region. This alkaline freshwater environment can be assessed the Milkha stream. Chara was found in growth in the lower as perspective for find new, unstudied aquatic objects in part of studied stream but away from community in followed which can be identified charophyte algae. The most years. -
Cryogenian Glacial Habitats As a Plant Terrestrialization Cradle – the Origin of Anydrophyta and Zygnematophyceae Split
Cryogenian glacial habitats as a plant terrestrialization cradle – the origin of Anydrophyta and Zygnematophyceae split Jakub Žárský1*, Vojtěch Žárský2,3, Martin Hanáček4,5, Viktor Žárský6,7 1CryoEco research group, Department of Ecology, Faculty of Science, Charles University, Praha, Czechia 2Department of Botany, University of British Columbia, 3529-6270 University Boulevard, Vancouver, BC, V6T 1Z4, Canada 3Department of Parasitology, Faculty of Science, Charles University, BIOCEV, Průmyslová 595, 25242 Vestec, Czechia 4Polar-Geo-Lab, Department of Geography, Faculty of Science, Masaryk University, Kotlářská 267/2, 611 37 Brno, Czechia 5Regional Museum in Jeseník, Zámecké náměstí 1, 790 01 Jeseník, Czechia 6Laboratory of Cell Biology, Institute of Experimental Botany of the Czech Academy of Sciences, Prague, Czechia 7Department of Experimental Plant Biology, Faculty of Science, Charles University, Prague, Czechia * Correspondence: [email protected] Keywords: Plant evolution, Cryogenian glaciation, Streptophyta, Charophyta, Anydrophyta, Zygnematophyceae, Embryophyta, Snowball Earth. Abstract For tens of millions of years (Ma) the terrestrial habitats of Snowball Earth during the Cryogenian period (between 720 to 635 Ma before present - Neoproterozoic Era) were possibly dominated by global snow and ice cover up to the equatorial sublimative desert. The most recent time-calibrated phylogenies calibrated not only on plants, but on a comprehensive set of eukaryotes, indicate within the Streptophyta, multicellular Charophyceae evolved -
Common Ancestry of Heterodimerizing TALE Homeobox Transcription Factors Across Metazoa and Archaeplastida
bioRxiv preprint doi: https://doi.org/10.1101/389700; this version posted August 10, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. 1 Title: Common ancestry of heterodimerizing TALE homeobox transcription factors across 2 Metazoa and Archaeplastida 3 4 Short title: Origins of TALE transcription factor networks 5 6 Sunjoo Joo1,5, Ming Hsiu Wang1,5, Gary Lui1, Jenny Lee1, Andrew Barnas1, Eunsoo Kim2, 7 Sebastian Sudek3, Alexandra Z. Worden3, and Jae-Hyeok Lee1,4¶ 8 9 1. Department of Botany, University of British Columbia, 6270 University Blvd., Vancouver, 10 BC V6T 1Z4, Canada 11 2. Division of Invertebrate Zoology and Sackler Institute for Comparative Genomics, 12 American Museum of Natural History, 200 Central Park West, New York, NY 10024, United 13 States 14 3. Monterey Bay Aquarium Research Institute, 7700 Sandholdt Rd., Moss Landing, CA 15 95039, United States 16 4. Corresponding author 17 5. Equally contributed 18 19 Corresponding Author: 20 Jae-Hyeok Lee 21 #2327-6270 University Blvd. 22 1-604-827-5973 23 [email protected] 24 1 bioRxiv preprint doi: https://doi.org/10.1101/389700; this version posted August 10, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. -
The Chloroplast and Mitochondrial Genome Sequences of The
The chloroplast and mitochondrial genome sequences of the charophyte Chaetosphaeridium globosum: Insights into the timing of the events that restructured organelle DNAs within the green algal lineage that led to land plants Monique Turmel*, Christian Otis, and Claude Lemieux Canadian Institute for Advanced Research, Program in Evolutionary Biology, and De´partement de Biochimie et de Microbiologie, Universite´Laval, Que´bec, QC, Canada G1K 7P4 Edited by Jeffrey D. Palmer, Indiana University, Bloomington, IN, and approved June 19, 2002 (received for review April 5, 2002) The land plants and their immediate green algal ancestors, the organelle DNAs (mainly for the cpDNA of Spirogyra maxima,a charophytes, form the Streptophyta. There is evidence that both member of the Zygnematales; refs. 11–13), it is difficult to predict the chloroplast DNA (cpDNA) and mitochondrial DNA (mtDNA) the timing of the major events that shaped the architectures of underwent substantial changes in their architecture (intron inser- land-plant cpDNAs and mtDNAs. tions, gene losses, scrambling in gene order, and genome expan- Mesostigma cpDNA is highly similar in size and gene organization sion in the case of mtDNA) during the evolution of streptophytes; to the cpDNAs of the 10 photosynthetic land plants examined thus however, because no charophyte organelle DNAs have been se- far (the bryophyte Marchantia polymorpha and nine vascular plants; quenced completely thus far, the suite of events that shaped see www.ncbi.nlm.nih.gov͞PMGifs͞Genomes͞organelles.html), streptophyte organelle genomes remains largely unknown. Here, but lacks any introns and contains Ϸ20 extra genes (7). Chloroplast we have determined the complete cpDNA (131,183 bp) and mtDNA gene loss is an ongoing process in the Streptophyta, with indepen- (56,574 bp) sequences of the charophyte Chaetosphaeridium glo- dent losses occurring in multiple lineages (14, 15). -
Seta Structure in Members of the Coleochaetales (Streptophyta)
Illinois State University ISU ReD: Research and eData Theses and Dissertations 3-23-2015 Seta Structure In Members Of The Coleochaetales (streptophyta) Timothy Richard Rockwell Illinois State University, [email protected] Follow this and additional works at: https://ir.library.illinoisstate.edu/etd Part of the Biology Commons Recommended Citation Rockwell, Timothy Richard, "Seta Structure In Members Of The Coleochaetales (streptophyta)" (2015). Theses and Dissertations. 376. https://ir.library.illinoisstate.edu/etd/376 This Thesis is brought to you for free and open access by ISU ReD: Research and eData. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of ISU ReD: Research and eData. For more information, please contact [email protected]. SETA STRUCTURE IN MEMBERS OF THE COLEOCHAETALES (STREPTOPHYTA) Timothy R. Rockwell 28 Pages May 2015 The charophycean green algae, which include the Coleochaetales, together with land plants form a monophyletic group, the streptophytes. The order Coleochaetales, a possible sister taxon to land plants, is defined by its distinguishing setae (hairs), which are encompassed by a collar. Previous studies of these setae yielded conflicting results and were confined to one species, Coleochaet. scutata. In order to interpret these results and learn about the evolution of this character, setae of four species of Coleochaete and the genus Chaetosphaeridium within the Coleochaetales were studied to determine whether cellulose, callose, and phenolic compounds contribute to the chemical composition of the setae. Two major differences were found in the complex hairs of the two genera. In Chaetosphaeridium the entire seta collar stained with calcofluor indicating the presence of cellulose, while in the four species of Coleochaete only the base of the seta collar stained with calcofluor. -
Signatures of Transcription Factor Evolution and the Secondary Gain of Red Algae Complexity
G C A T T A C G G C A T genes Article Signatures of Transcription Factor Evolution and the Secondary Gain of Red Algae Complexity Romy Petroll 1 , Mona Schreiber 1,2 , Hermann Finke 1, J. Mark Cock 3 , Sven B. Gould 1,4 and Stefan A. Rensing 1,5,* 1 Plant Cell Biology, Department of Biology, University of Marburg, 35037 Marburg, Germany; [email protected] (R.P.); [email protected] (M.S.); hermann.fi[email protected] (H.F.); [email protected] (S.B.G.) 2 Leibniz Institute of Plant Genetics and Crop Plant Research (IPK), 06466 Gatersleben, Germany 3 Algal Genetics Group, UMR 8227, Integrative Biology of Marine Models, Station Biologique de Roscoff, Sorbonne Université, CNRS, UPMC University Paris 06, CS 90074, 29688 Roscoff, France; [email protected] 4 Institute for Molecular Evolution, Heinrich-Heine-University Düsseldorf, 40225 Düsseldorf, Germany 5 Centre for Biological Signaling Studies (BIOSS), University of Freiburg, 79108 Freiburg, Germany * Correspondence: [email protected] Abstract: Red algae (Rhodophyta) belong to the superphylum Archaeplastida, and are a species-rich group exhibiting diverse morphologies. Theory has it that the unicellular red algal ancestor went through a phase of genome contraction caused by adaptation to extreme environments. More re- cently, the classes Porphyridiophyceae, Bangiophyceae, and Florideophyceae experienced genome expansions, coinciding with an increase in morphological complexity. Transcription-associated proteins (TAPs) regulate transcription, show lineage-specific patterns, and are related to organis- mal complexity. To better understand red algal TAP complexity and evolution, we investigated Citation: Petroll, R.; Schreiber, M.; the TAP family complement of uni- and multi-cellular red algae. -
Phylotranscriptomic Analysis of the Origin and Early Diversification Of
Phylotranscriptomic analysis of the origin and early PNAS PLUS diversification of land plants Norman J. Wicketta,b,1,2, Siavash Mirarabc,1, Nam Nguyenc, Tandy Warnowc, Eric Carpenterd, Naim Matascie,f, Saravanaraj Ayyampalayamg, Michael S. Barkerf, J. Gordon Burleighh, Matthew A. Gitzendannerh,i, Brad R. Ruhfelh,j,k, Eric Wafulal, Joshua P. Derl, Sean W. Grahamm, Sarah Mathewsn, Michael Melkoniano, Douglas E. Soltish,i,k, Pamela S. Soltish,i,k, Nicholas W. Milesk, Carl J. Rothfelsp,q, Lisa Pokornyp,r, A. Jonathan Shawp, Lisa DeGironimos, Dennis W. Stevensons, Barbara Sureko, Juan Carlos Villarrealt,BéatriceRoureu, Hervé Philippeu,v, Claude W. dePamphilisl, Tao Chenw, Michael K. Deyholosd, Regina S. Baucomx, Toni M. Kutchany, Megan M. Augustiny,JunWangz, Yong Zhangv, Zhijian Tianz,ZhixiangYanz,XiaoleiWuz,XiaoSunz, Gane Ka-Shu Wongd,z,aa,2, and James Leebens-Mackg,2 aChicago Botanic Garden, Glencoe, IL 60022; bProgram in Biological Sciences, Northwestern University, Evanston, IL 60208; cDepartment of Computer Science, University of Texas, Austin, TX 78712; dDepartment of Biological Sciences, University of Alberta, Edmonton, AB, Canada T6G 2E9; eiPlant Collaborative, Tucson, AZ 85721; fDepartment of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ 85721; gDepartment of Plant Biology, University of Georgia, Athens, GA 30602; hDepartment of Biology and iGenetics Institute, University of Florida, Gainesville, FL 32611; jDepartment of Biological Sciences, Eastern Kentucky University, Richmond, KY 40475; kFlorida Museum of -
Origin of Land Plants
Wodniok et al. BMC Evolutionary Biology 2011, 11:104 http://www.biomedcentral.com/1471-2148/11/104 RESEARCHARTICLE Open Access Origin of land plants: Do conjugating green algae hold the key? Sabina Wodniok1†, Henner Brinkmann2†, Gernot Glöckner3, Andrew J Heidel4, Hervé Philippe2, Michael Melkonian1 and Burkhard Becker1* Abstract Background: The terrestrial habitat was colonized by the ancestors of modern land plants about 500 to 470 million years ago. Today it is widely accepted that land plants (embryophytes) evolved from streptophyte algae, also referred to as charophycean algae. The streptophyte algae are a paraphyletic group of green algae, ranging from unicellular flagellates to morphologically complex forms such as the stoneworts (Charales). For a better understanding of the evolution of land plants, it is of prime importance to identify the streptophyte algae that are the sister-group to the embryophytes. The Charales, the Coleochaetales or more recently the Zygnematales have been considered to be the sister group of the embryophytes However, despite many years of phylogenetic studies, this question has not been resolved and remains controversial. Results: Here, we use a large data set of nuclear-encoded genes (129 proteins) from 40 green plant taxa (Viridiplantae) including 21 embryophytes and six streptophyte algae, representing all major streptophyte algal lineages, to investigate the phylogenetic relationships of streptophyte algae and embryophytes. Our phylogenetic analyses indicate that either the Zygnematales or a clade consisting of the Zygnematales and the Coleochaetales are the sister group to embryophytes. Conclusions: Our analyses support the notion that the Charales are not the closest living relatives of embryophytes. Instead, the Zygnematales or a clade consisting of Zygnematales and Coleochaetales are most likely the sister group of embryophytes. -
Genomes of Early-Diverging Streptophyte Algae Shed Light on Plant Terrestrialization
Genomes of early-diverging streptophyte algae shed light on plant terrestrialization Wang, Sibo; Li, Linzhou; Li, Haoyuan; Sahu, Sunil Kumar; Wang, Hongli; Xu, Yan; Xian, Wenfei; Song, Bo; Liang, Hongping; Cheng, Shifeng; Chang, Yue; Song, Yue; Çebi, Zehra; Wittek, Sebastian; Reder, Tanja; Peterson, Morten; Yang, Huanming; Wang, Jian; Melkonian, Barbara; Van de Peer, Yves; Xu, Xun; Wong, Gane Ka-Shu; Melkonian, Michael; Liu, Huan; Liu, Xin Published in: Nature Plants DOI: 10.1038/s41477-019-0560-3 Publication date: 2020 Document version Publisher's PDF, also known as Version of record Document license: CC BY Citation for published version (APA): Wang, S., Li, L., Li, H., Sahu, S. K., Wang, H., Xu, Y., ... Liu, X. (2020). Genomes of early-diverging streptophyte algae shed light on plant terrestrialization. Nature Plants, 6(2), 95-106. https://doi.org/10.1038/s41477-019-0560- 3 Download date: 09. apr.. 2020 ARTICLES https://doi.org/10.1038/s41477-019-0560-3 Genomes of early-diverging streptophyte algae shed light on plant terrestrialization Sibo Wang1,2,3,12, Linzhou Li1,4,5,12, Haoyuan Li1,2, Sunil Kumar Sahu 1,4, Hongli Wang1,2, Yan Xu1,6, Wenfei Xian1,2, Bo Song1,2, Hongping Liang1,6, Shifeng Cheng1,2, Yue Chang 1,2, Yue Song1,2, Zehra Çebi7, Sebastian Wittek7, Tanja Reder7, Morten Peterson3, Huanming Yang1,2, Jian Wang1,2, Barbara Melkonian7,11, Yves Van de Peer8,9, Xun Xu1,2, Gane Ka-Shu Wong 1,10*, Michael Melkonian7,11*, Huan Liu 1,3,4* and Xin Liu 1,2,4* Mounting evidence suggests that terrestrialization of plants started in streptophyte green algae, favoured by their dual exis- tence in freshwater and subaerial/terrestrial environments. -
Seedless Plants
702 Chapter 25 | Seedless Plants 25.1 | Early Plant Life By the end of this section, you will be able to do the following: • Discuss the challenges to plant life on land • Describe the adaptations that allowed plants to colonize the land • Describe the timeline of plant evolution and the impact of land plants on other living things The kingdom Plantae constitutes large and varied groups of organisms. There are more than 300,000 species of catalogued plants. Of these, more than 260,000 are seed plants. Mosses, ferns, conifers, and flowering plants are all members of the plant kingdom. Land plants arose within the Archaeplastida, which includes the red algae (Rhodophyta) and two groups of green algae, Chlorophyta and Charaphyta. Most biologists also consider at least some green algae to be plants, although others exclude all algae from the plant kingdom. The reason for this disagreement stems from the fact that only green algae, the Chlorophytes and Charophytes, share common characteristics with land plants (such as using chlorophyll a and b plus carotene in the same proportion as plants). These characteristics are absent from other types of algae. Algae and Evolutionary Paths to Photosynthesis Some scientists consider all algae to be plants, while others assert that only the green algae belong in the kingdom Plantae. Still others include only the Charophytes among the plants. These divergent opinions are related to the different evolutionary paths to photosynthesis selected for in different types of algae. While all algae are photosynthetic—that is, they contain some form of a chloroplast—they didn’t all become photosynthetic via the same path.