Seta Structure in Members of the Coleochaetales (Streptophyta)
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Chapter 1-1 Introduction
Glime, J. M. 2017. Introduction. Chapt. 1. In: Glime, J. M. Bryophyte Ecology. Volume 1. Physiological Ecology. Ebook sponsored 1-1-1 by Michigan Technological University and the International Association of Bryologists. Last updated 25 April 2021 and available at <http://digitalcommons.mtu.edu/bryophyte-ecology/>. CHAPTER 1-1 INTRODUCTION TABLE OF CONTENTS Thinking on a New Scale .................................................................................................................................... 1-1-2 Adaptations to Land ............................................................................................................................................ 1-1-3 Minimum Size..................................................................................................................................................... 1-1-5 Do Bryophytes Lack Diversity?.......................................................................................................................... 1-1-6 The "Moss".......................................................................................................................................................... 1-1-7 What's in a Name?............................................................................................................................................... 1-1-8 Phyla/Divisions............................................................................................................................................ 1-1-8 Role of Bryology................................................................................................................................................ -
The Chloroplast Rpl23 Gene Cluster of Spirogyra Maxima (Charophyceae) Shares Many Similarities with the Angiosperm Rpl23 Operon
Algae Volume 17(1): 59-68, 2002 The Chloroplast rpl23 Gene Cluster of Spirogyra maxima (Charophyceae) Shares Many Similarities with the Angiosperm rpl23 Operon Jungho Lee* and James R. Manhart Department of Biology, Texas A&M University, College Station, TX, 77843-3258, U.S.A. A phylogenetic affinity between charophytes and embryophytes (land plants) has been explained by a few chloro- plast genomic characters including gene and intron (Manhart and Palmer 1990; Baldauf et al. 1990; Lew and Manhart 1993). Here we show that a charophyte, Spirogyra maxima, has the largest operon of angiosperm chloroplast genomes, rpl23 operon (trnI-rpl23-rpl2-rps19-rpl22-rps3-rpl16-rpl14-rps8-infA-rpl36-rps11-rpoA) containing both embryophyte introns, rpl16.i and rpl2.i. The rpl23 gene cluster of Spirogyra contains a distinct eubacterial promoter sequence upstream of rpl23, which is the first gene of the green algal rpl23 gene cluster. This sequence is completely absent in angiosperms but is present in non-flowering plants. The results imply that, in the rpl23 gene cluster, early charophytes had at least two promoters, one upstream of trnI and another upstream of rpl23, which partially or completely lost its function in land plants. A comparison of gene clusters of prokaryotes, algal chloroplast DNAs and land plant cpDNAs indicated a loss of numerous genes in chlorophyll a+b eukaryotes. A phylogenetic analysis using presence/absence of genes and introns as characters produced trees with a strongly supported clade contain- ing chlorophyll a+b eukaryotes. Spirogyra and embryophytes formed a clade characterized by the loss of rpl5 and rps9 and the gain of trnI (CAU) and introns in rpl2 and rpl16. -
Xylans of Red and Green Algae: What Is Known About Their Structures and How They Are Synthesised?
polymers Review Xylans of Red and Green Algae: What Is Known about Their Structures and How They Are Synthesised? Yves S.Y. Hsieh 1,* and Philip J. Harris 2,* 1 Division of Glycoscience, Department of Chemistry, School of Engineering Sciences in Chemistry, Biotechnology and Health, Royal Institute of Technology (KTH), AlbaNova University Centre, SE-106 91 Stockholm, Sweden 2 School of Biological Science, The University of Auckland, Private Bag 92019, Auckland, New Zealand * Correspondence: [email protected] (Y.S.Y.H.); [email protected] (P.J.H.); Tel.: +46-8-790-9937 (Y.S.Y.H.); +64-9-923-8366 (P.J.H.) Received: 30 January 2019; Accepted: 17 February 2019; Published: 18 February 2019 Abstract: Xylans with a variety of structures have been characterised in green algae, including chlorophytes (Chlorophyta) and charophytes (in the Streptophyta), and red algae (Rhodophyta). Substituted 1,4-β-D-xylans, similar to those in land plants (embryophytes), occur in the cell wall matrix of advanced orders of charophyte green algae. Small proportions of 1,4-β-D-xylans have also been found in the cell walls of some chlorophyte green algae and red algae but have not been well characterised. 1,3-β-D-Xylans occur as triple helices in microfibrils in the cell walls of chlorophyte algae in the order Bryopsidales and of red algae in the order Bangiales. 1,3;1,4-β-D-Xylans occur in the cell wall matrix of red algae in the orders Palmariales and Nemaliales. In the angiosperm Arabidopsis thaliana, the gene IRX10 encodes a xylan 1,4-β-D-xylosyltranferase (xylan synthase), and, when heterologously expressed, this protein catalysed the production of the backbone of 1,4-β-D-xylans. -
Evolution and Comparative Morphology of the Euglenophyte
EVOLUTION AND COMPARATIVE MORPHOLOGY OF THE EUGLENOPHYTE PLASTID by PATRICK JERRY PAUL BROWN (Under the Direction of Mark A. Farmer) ABSTRACT My doctoral research centered on understanding the evolution of the euglenophyte protists, with special attention paid to their plastids. The euglenophytes are a widely distributed group of euglenid protists that have acquired a chloroplast via secondary symbiogenesis. The goals of my research were to 1) test the efficacy of plastid morphological and ultrastructural characters in phylogenetic analysis; 2) understand the process of plastid development and partitioning in the euglenophytes; 3) to use a plastid- encoded protein gene to determine a euglenophyte phylogeny; and 4) to perform a multi- gene analysis to uncover clues about the origins of the euglenophyte plastid. My work began with an alpha-taxonomic study that redefined the rare euglenophyte Euglena rustica. This work not only validly circumscribed the species, but also noted novel features of its habitat, cyclic migration habits, and cellular biology. This was followed by a study of plastid morphology and development in a number of diverse euglenophytes. The results of this study showed that the plastids of euglenophytes undergo drastic changes in morphology and ultrastructure over the course of a single cell division cycle. I concluded that there are four main classes of plastid development and partitioning in the euglenophytes, and that the class a given species will use is dependant on its interphase plastid morphology and the rigidity of the cell. The discovery of the class IV partitioning strategy in which cells with only one or very few plastids fragment their plastids prior to cell division was very significant. -
JUDD W.S. Et. Al. (2002) Plant Systematics: a Phylogenetic Approach. Chapter 7. an Overview of Green
UNCORRECTED PAGE PROOFS An Overview of Green Plant Phylogeny he word plant is commonly used to refer to any auto- trophic eukaryotic organism capable of converting light energy into chemical energy via the process of photosynthe- sis. More specifically, these organisms produce carbohydrates from carbon dioxide and water in the presence of chlorophyll inside of organelles called chloroplasts. Sometimes the term plant is extended to include autotrophic prokaryotic forms, especially the (eu)bacterial lineage known as the cyanobacteria (or blue- green algae). Many traditional botany textbooks even include the fungi, which differ dramatically in being heterotrophic eukaryotic organisms that enzymatically break down living or dead organic material and then absorb the simpler products. Fungi appear to be more closely related to animals, another lineage of heterotrophs characterized by eating other organisms and digesting them inter- nally. In this chapter we first briefly discuss the origin and evolution of several separately evolved plant lineages, both to acquaint you with these important branches of the tree of life and to help put the green plant lineage in broad phylogenetic perspective. We then focus attention on the evolution of green plants, emphasizing sev- eral critical transitions. Specifically, we concentrate on the origins of land plants (embryophytes), of vascular plants (tracheophytes), of 1 UNCORRECTED PAGE PROOFS 2 CHAPTER SEVEN seed plants (spermatophytes), and of flowering plants dons.” In some cases it is possible to abandon such (angiosperms). names entirely, but in others it is tempting to retain Although knowledge of fossil plants is critical to a them, either as common names for certain forms of orga- deep understanding of each of these shifts and some key nization (e.g., the “bryophytic” life cycle), or to refer to a fossils are mentioned, much of our discussion focuses on clade (e.g., applying “gymnosperms” to a hypothesized extant groups. -
Lateral Gene Transfer of Anion-Conducting Channelrhodopsins Between Green Algae and Giant Viruses
bioRxiv preprint doi: https://doi.org/10.1101/2020.04.15.042127; this version posted April 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 5 Lateral gene transfer of anion-conducting channelrhodopsins between green algae and giant viruses Andrey Rozenberg 1,5, Johannes Oppermann 2,5, Jonas Wietek 2,3, Rodrigo Gaston Fernandez Lahore 2, Ruth-Anne Sandaa 4, Gunnar Bratbak 4, Peter Hegemann 2,6, and Oded 10 Béjà 1,6 1Faculty of Biology, Technion - Israel Institute of Technology, Haifa 32000, Israel. 2Institute for Biology, Experimental Biophysics, Humboldt-Universität zu Berlin, Invalidenstraße 42, Berlin 10115, Germany. 3Present address: Department of Neurobiology, Weizmann 15 Institute of Science, Rehovot 7610001, Israel. 4Department of Biological Sciences, University of Bergen, N-5020 Bergen, Norway. 5These authors contributed equally: Andrey Rozenberg, Johannes Oppermann. 6These authors jointly supervised this work: Peter Hegemann, Oded Béjà. e-mail: [email protected] ; [email protected] 20 ABSTRACT Channelrhodopsins (ChRs) are algal light-gated ion channels widely used as optogenetic tools for manipulating neuronal activity 1,2. Four ChR families are currently known. Green algal 3–5 and cryptophyte 6 cation-conducting ChRs (CCRs), cryptophyte anion-conducting ChRs (ACRs) 7, and the MerMAID ChRs 8. Here we 25 report the discovery of a new family of phylogenetically distinct ChRs encoded by marine giant viruses and acquired from their unicellular green algal prasinophyte hosts. -
Neoproterozoic Origin and Multiple Transitions to Macroscopic Growth in Green Seaweeds
bioRxiv preprint doi: https://doi.org/10.1101/668475; this version posted June 12, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Neoproterozoic origin and multiple transitions to macroscopic growth in green seaweeds Andrea Del Cortonaa,b,c,d,1, Christopher J. Jacksone, François Bucchinib,c, Michiel Van Belb,c, Sofie D’hondta, Pavel Škaloudf, Charles F. Delwicheg, Andrew H. Knollh, John A. Raveni,j,k, Heroen Verbruggene, Klaas Vandepoeleb,c,d,1,2, Olivier De Clercka,1,2 Frederik Leliaerta,l,1,2 aDepartment of Biology, Phycology Research Group, Ghent University, Krijgslaan 281, 9000 Ghent, Belgium bDepartment of Plant Biotechnology and Bioinformatics, Ghent University, Technologiepark 71, 9052 Zwijnaarde, Belgium cVIB Center for Plant Systems Biology, Technologiepark 71, 9052 Zwijnaarde, Belgium dBioinformatics Institute Ghent, Ghent University, Technologiepark 71, 9052 Zwijnaarde, Belgium eSchool of Biosciences, University of Melbourne, Melbourne, Victoria, Australia fDepartment of Botany, Faculty of Science, Charles University, Benátská 2, CZ-12800 Prague 2, Czech Republic gDepartment of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA hDepartment of Organismic and Evolutionary Biology, Harvard University, Cambridge, Massachusetts, 02138, USA. iDivision of Plant Sciences, University of Dundee at the James Hutton Institute, Dundee, DD2 5DA, UK jSchool of Biological Sciences, University of Western Australia (M048), 35 Stirling Highway, WA 6009, Australia kClimate Change Cluster, University of Technology, Ultimo, NSW 2006, Australia lMeise Botanic Garden, Nieuwelaan 38, 1860 Meise, Belgium 1To whom correspondence may be addressed. Email [email protected], [email protected], [email protected] or [email protected]. -
New Phylogenomic Analysis of the Enigmatic Phylum Telonemia Further Resolves the Eukaryote Tree of Life
bioRxiv preprint doi: https://doi.org/10.1101/403329; this version posted August 30, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. New phylogenomic analysis of the enigmatic phylum Telonemia further resolves the eukaryote tree of life Jürgen F. H. Strassert1, Mahwash Jamy1, Alexander P. Mylnikov2, Denis V. Tikhonenkov2, Fabien Burki1,* 1Department of Organismal Biology, Program in Systematic Biology, Uppsala University, Uppsala, Sweden 2Institute for Biology of Inland Waters, Russian Academy of Sciences, Borok, Yaroslavl Region, Russia *Corresponding author: E-mail: [email protected] Keywords: TSAR, Telonemia, phylogenomics, eukaryotes, tree of life, protists bioRxiv preprint doi: https://doi.org/10.1101/403329; this version posted August 30, 2018. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Abstract The broad-scale tree of eukaryotes is constantly improving, but the evolutionary origin of several major groups remains unknown. Resolving the phylogenetic position of these ‘orphan’ groups is important, especially those that originated early in evolution, because they represent missing evolutionary links between established groups. Telonemia is one such orphan taxon for which little is known. The group is composed of molecularly diverse biflagellated protists, often prevalent although not abundant in aquatic environments. -
Biosystems Diversity
ISSN 2519-8521 (Print) Regulatory Mechanisms ISSN 2520-2588 (Online) Regul. Mech. Biosyst., 8(4), 532–539 in Biosystems doi: 10.15421/021782 New finding of green algae with potential for algal biotechnology, Chlorococcum oleofaciens and its molecular investigation Y. I. Maltsev, T. V. Konovalenko Bogdan Khmelnitskiy Melitopol State Pedagogical University, Melitopol, Ukraine Article info Maltsev, Y. I., & Konovalenko, T. V. (2017). New finding of green algae with potential for algal biotechnology, Received 14.09.2017 Chlorococcum oleofaciens and its molecular investigation. Regulatory Mechanisms in Biosystems, 8(4), 532–539. Received in revised form doi:10.15421/021782 28.10.2017 Accepted 03.11.2017 The practice of soil algology shows that algae from the order Chlamydomonadales are among the most poorly studied and difficult to identify due to the high heterogeneity of their morphology and ultrastructure. Only the involvement of Bogdan Khmelnitskiy Melitopol molecular genetic methods usually makes it possible to determine their taxonomic status with high accuracy. At the same State Pedagogical University, time, in the algae flora of Ukraine there are more than 250 species from the order Chlamydomonadales, the status of which Getmanska st., 20, Melitopol, in most cases is established exclusively on the basis of light microscopy. This work is devoted to the study of the Zaporizhia region, 72312, Ukraine. biotechnologically promising green alga Chlorococcum oleofaciens, taking into account the modern understanding of its Tel.: +38-096-548-34-36 taxonomic status. Two new strains of this species, separated from samples of forest litter and oak forest soil (the Samara E-mail: [email protected] Forest, Dnipropetrovsk region), are described. -
Different Fates of the Chloroplast Tufa Gene Following Its Transfer to the Nucleus in Green Algae
Proc. Nail. Acad. Sci. USA Vol. 87, pp. 5317-5321, July 1990 Evolution Different fates of the chloroplast tufA gene following its transfer to the nucleus in green algae (elongation factor Tu/gene transfer/organelle genomes/gene duplication/multigene family) SANDRA L. BALDAUF*, JAMES R. MANHARTt, AND JEFFREY D. PALMER* *Department of Biology, Indiana University, Bloomington, IN 47405; and tDepartment of Biology, Texas A&M University, College Station, TX 77843 Communicated by David L. Dilcher, May 8, 1990 (receivedfor review March 23, 1990) ABSTRACT Previous work suggested that the tufA gene, by a combination offilter hybridization and gene sequencing. encoding protein synthesis elongation factor Tu, was trans- Among the Charophyceae, an unusual chloroplast tufAl was ferred from the chloroplast to the nucleus within the green algal found in the genus Coleochaete, the proposed sister group to lineage giving rise to land plants. In this report we investigate land plants (10, 11). the timing and mode of transfer by examining chloroplast and nuclear DNA from the three major classes of green algae, with MATERIALS AND METHODS emphasis on the class Charophyceae, the proposed sister group Filaments of Spirogyra maxima and Sirogonium melanospo- to land plants. Filter hybridizations reveal a chloroplast tufA rum were obtained from unialgal cultures grown in soil/water gene in all Ulvophyceae and Chlorophyceae and in some but not medium (12) on a 16:8 hr light: dark cycle at 200C ± 20C under all Charophyceae. One charophycean alga, Coleochaete orbic- fluorescent light at an illumination of 50 gmol m-2'so1. Ni- ularis, is shown to contain an intact but highly divergent tella translucens and Chara connivens were grown in aquaria chloroplast tufA gene, whose product is predicted to be non- in a soil/water solution in a greenhouse. -
From Algae to Flowering Plants
PP62CH23-Popper ARI 4 April 2011 14:20 Evolution and Diversity of Plant Cell Walls: From Algae to Flowering Plants Zoe¨ A. Popper,1 Gurvan Michel,3,4 Cecile´ Herve,´ 3,4 David S. Domozych,5 William G.T. Willats,6 Maria G. Tuohy,2 Bernard Kloareg,3,4 and Dagmar B. Stengel1 1Botany and Plant Science, and 2Molecular Glycotechnology Group, Biochemistry, School of Natural Sciences, National University of Ireland, Galway, Ireland; email: [email protected] 3CNRS and 4UPMC University Paris 6, UMR 7139 Marine Plants and Biomolecules, Station Biologique de Roscoff, F-29682 Roscoff, Bretagne, France 5Department of Biology and Skidmore Microscopy Imaging Center, Skidmore College, Saratoga Springs, New York 12866 6Department of Plant Biology and Biochemistry, Faculty of Life Sciences, University of Copenhagen, Bulowsvej,¨ 17-1870 Frederiksberg, Denmark Annu. Rev. Plant Biol. 2011. 62:567–90 Keywords First published online as a Review in Advance on xyloglucan, mannan, arabinogalactan proteins, genome, environment, February 22, 2011 multicellularity The Annual Review of Plant Biology is online at plant.annualreviews.org Abstract This article’s doi: All photosynthetic multicellular Eukaryotes, including land plants 10.1146/annurev-arplant-042110-103809 by Universidad Veracruzana on 01/08/14. For personal use only. and algae, have cells that are surrounded by a dynamic, complex, Copyright c 2011 by Annual Reviews. carbohydrate-rich cell wall. The cell wall exerts considerable biologi- All rights reserved cal and biomechanical control over individual cells and organisms, thus Annu. Rev. Plant Biol. 2011.62:567-590. Downloaded from www.annualreviews.org 1543-5008/11/0602-0567$20.00 playing a key role in their environmental interactions. -
The Charophytes (Charophyta) Locality in the Milkha Stream, Lower Jordan, Israel
Natural Resources and Conservation 3(2): 19-30, 2015 http://www.hrpub.org DOI: 10.13189/nrc.2015.030201 The Charophytes (Charophyta) Locality in the Milkha Stream, Lower Jordan, Israel Sophia Barinova1,*, Roman Romanov2 1Institute of Evolution, University of Haifa, Israel 2Central Siberian Botanical Garden of the Siberian Branch of the Russian Academy of Sciences, Russia Copyright © 2015 by authors, all rights reserved. Authors agree that this article remains permanently open access under the terms of the Creative Commons Attribution License 4.0 International License Abstract First study of new locality the Milkha Stream, revealed 14 charophyte species (16 with ifraspecific variety) the Lower Jordan River tributary, with charophyte algae, in that known for Israel [3,4] from references and our studies. semi-arid region of Israel has been implemented for Last year research in Israel and Eastern Mediterranean let us revealing of algal diversity and ecological assessment of the too includes few new localities, algal diversity of which has water object environment by bio-indication methods. been never studied before [5-10]. Altogether forty seven species from five taxonomic The charophytes prefer alkaline water environment which Divisions of algae and cyanobacteria including one of them forms on the carbonates that are very distributed in studied macro-algae Chara gymnophylla A. Braun were revealed in region. This alkaline freshwater environment can be assessed the Milkha stream. Chara was found in growth in the lower as perspective for find new, unstudied aquatic objects in part of studied stream but away from community in followed which can be identified charophyte algae. The most years.