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Phylogenomic Analyses Reveal Intractable Evolutionary History of a Temperate Bamboo Genus (Poaceae: Bambusoideae)
Plant Diversity 41 (2019) 213e219 Contents lists available at ScienceDirect Plant Diversity journal homepage: http://www.keaipublishing.com/en/journals/plant-diversity/ http://journal.kib.ac.cn Phylogenomic analyses reveal intractable evolutionary history of a temperate bamboo genus (Poaceae: Bambusoideae) ** * Cen Guo a, b, Zhen-Hua Guo a, , De-Zhu Li a, a Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, 650201, China b Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, 650201, China article info abstract Article history: Shibataea is a genus of temperate bamboos (Poaceae: Bambusoideae) endemic to China, but little is Received 12 March 2019 known about its phylogenetic position and interspecific relationships. To elucidate the phylogenetic Received in revised form relationship of the bamboo genus Shibataea, we performed genome-scale phylogenetic analysis of all 24 May 2019 seven species and one variety of the genus using double digest restriction-site associated DNA Accepted 25 May 2019 sequencing (ddRAD-seq) and whole plastid genomes generated using genome skimming. Our phyloge- Available online 31 May 2019 nomic analyses based on ddRAD-seq and plastome data congruently recovered Shibataea as mono- phyletic. The nuclear data resolved S. hispida as the earliest diverged species, followed by S. chinensis, Keywords: Shibataea while the rest of Shibataea can be further divided into two clades. However, the plastid and nuclear fl fi ddRAD-seq topologies con ict signi cantly. By comparing the results of network analysis and topologies recon- Genome skimming structed from different datasets, we identify S. kumasasa as the most admixed species, which may be Phylogeny caused by incomplete lineage sorting (ILS) or interspecific gene flow with four sympatric species. -
High-Throughput Sequencing of Six Bamboo Chloroplast Genomes: Phylogenetic Implications for Temperate Woody Bamboos (Poaceae: Bambusoideae)
High-Throughput Sequencing of Six Bamboo Chloroplast Genomes: Phylogenetic Implications for Temperate Woody Bamboos (Poaceae: Bambusoideae) Yun-Jie Zhang1,2,3., Peng-Fei Ma1,2,3., De-Zhu Li1,2* 1 Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, People’s Republic of China, 2 Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, People’s Republic of China, 3 Graduate University of Chinese Academy of Sciences, Beijing, People’s Republic of China Abstract Background: Bambusoideae is the only subfamily that contains woody members in the grass family, Poaceae. In phylogenetic analyses, Bambusoideae, Pooideae and Ehrhartoideae formed the BEP clade, yet the internal relationships of this clade are controversial. The distinctive life history (infrequent flowering and predominance of asexual reproduction) of woody bamboos makes them an interesting but taxonomically difficult group. Phylogenetic analyses based on large DNA fragments could only provide a moderate resolution of woody bamboo relationships, although a robust phylogenetic tree is needed to elucidate their evolutionary history. Phylogenomics is an alternative choice for resolving difficult phylogenies. Methodology/Principal Findings: Here we present the complete nucleotide sequences of six woody bamboo chloroplast (cp) genomes using Illumina sequencing. These genomes are similar to those of other grasses and rather conservative in evolution. We constructed a phylogeny of Poaceae from 24 complete cp genomes including 21 grass species. Within the BEP clade, we found strong support for a sister relationship between Bambusoideae and Pooideae. In a substantial improvement over prior studies, all six nodes within Bambusoideae were supported with $0.95 posterior probability from Bayesian inference and 5/6 nodes resolved with 100% bootstrap support in maximum parsimony and maximum likelihood analyses. -
WRA Species Report
Family: Rosaceae Taxon: Pyracantha koidzumii Synonym: Cotoneaster koidzumii Hayata (basionym) Common Name Formosa firethorn tan wan huo ji Questionaire : current 20090513 Assessor: Chuck Chimera Designation: H(HPWRA) Status: Assessor Approved Data Entry Person: Chuck Chimera WRA Score 7 101 Is the species highly domesticated? y=-3, n=0 n 102 Has the species become naturalized where grown? y=1, n=-1 103 Does the species have weedy races? y=1, n=-1 201 Species suited to tropical or subtropical climate(s) - If island is primarily wet habitat, then (0-low; 1-intermediate; 2- High substitute "wet tropical" for "tropical or subtropical" high) (See Appendix 2) 202 Quality of climate match data (0-low; 1-intermediate; 2- High high) (See Appendix 2) 203 Broad climate suitability (environmental versatility) y=1, n=0 n 204 Native or naturalized in regions with tropical or subtropical climates y=1, n=0 y 205 Does the species have a history of repeated introductions outside its natural range? y=-2, ?=-1, n=0 y 301 Naturalized beyond native range y = 1*multiplier (see y Appendix 2), n= question 205 302 Garden/amenity/disturbance weed n=0, y = 1*multiplier (see y Appendix 2) 303 Agricultural/forestry/horticultural weed n=0, y = 2*multiplier (see n Appendix 2) 304 Environmental weed n=0, y = 2*multiplier (see n Appendix 2) 305 Congeneric weed n=0, y = 1*multiplier (see y Appendix 2) 401 Produces spines, thorns or burrs y=1, n=0 y 402 Allelopathic y=1, n=0 n 403 Parasitic y=1, n=0 n 404 Unpalatable to grazing animals y=1, n=-1 405 Toxic to animals y=1, -
Identification and Characterization of the PEBP Family Genes in Moso
www.nature.com/scientificreports OPEN Identifcation and Characterization of the PEBP Family Genes in Moso Bamboo (Phyllostachys heterocycla) Zhaohe Yang1,2, Lei Chen1,2, Markus V. Kohnen2, Bei Xiong2,3, Xi Zhen2,3, Jiakai Liao2,3, Yoshito Oka2, Qiang Zhu2, Lianfeng Gu2, Chentao Lin 2,4* & Bobin Liu1,2* Moso bamboo is one of the economically most important plants in China. Moso bamboo is a monocarpic perennial that exhibits poor and slow germination. Thus, the fowering often causes destruction of moso bamboo forestry. However, how control of fowering and seed germination are regulated in moso bamboo is largely unclear. In this study, we identifed 5 members (PhFT1-5) of the phosphatidyl ethanolamine-binding proteins (PEBP) family from moso bamboo genome that regulate fowering, fower architecture and germination, and characterized the function of these PEBP family genes further in Arabidopsis. Phylogenetic analysis revealed that 3 (PhFT1, PhFT2 and PhFT3), 1 (PhFT4) and 1 (PhFT5) members belong to the TFL1-like clade, FT-like clade, and MFT-like clade, respectively. These PEBP family genes possess all structure necessary for PEBP gene function. The ectopic overexpression of PhFT4 and PhFT5 promotes fowering time in Arabidopsis, and that of PhFT1, PhFT2 and PhFT3 suppresses it. In addition, the overexpression of PhFT5 promotes seed germination rate. Interestingly, the overexpression of PhFT1 suppressed seed germination rate in Arabidopsis. The expression of PhFT1 and PhFT5 is signifcantly higher in seed than in tissues including leaf and shoot apical meristem, implying their function in seed germination. Taken together, our results suggested that the PEBP family genes play important roles as regulators of fowering and seed germination in moso bamboo and thereby are necessary for the sustainability of moso bamboo forest. -
The Good Luck Or Fortune-Inviting Bamboo, Shibataea Kumasaca
The Good Luck or Fortune-inviting Bamboo Shibataea kumasaca (Steud.) Makino ex Nakai: A discussion of the correct botanical name Chris Stapleton Introduction The article by Karl Bareis in UK Bamboo Society Newsletter No 26 led me to look at the spelling of the species name for this lovely bamboo, and to find out why the local name for Sasa veitchii became tied up in it. I concluded that the Bad Luck Bamboo would be a better name for it, for anyone trying to get the name right. Both spellings kumasasa and kumasaca appear in the literature, and the authorities given for the generic and species names also vary widely. This is a charming dwarf bamboo with rounded leaves, having the appearance of a miniature short-branched Phyllostachys. As an architectural plant it is very useful, spreading slowly into dense low domes that can be clipped to maintain their size. Okamura et al. (1991), in their guide to horticultural bamboos in Japan, report that it is essential for the Yebisu religious festival. Karl has now kindly filled in more details of its history for us. It certainly warrants wider planting, both for its attractive appearance, and for its strong Japanese cultural associations. When it was first referred to in lists of plants grown in Dutch colonies of the East Indies, now Java, nearly all bamboos were still placed in the genus Bambusa. Munro seems to have been the first to realise that such a placement was unsatisfactory, and he transferred it into Phyllostachys (1868). Makino later decided that it deserved a new genus of its own, and he coined the name Shibataea, dedicating it to the Japanese botanist Dr Keitaro Shibata, in recognition of his contributions to the study of Japanese bamboos. -
Baies... 8. Buisson-Ardent Gui Houx
BAIES ROUGES... 8. BUISSON-ARDENT 1 Pyracantha Pyracantha , communément appelé « Buisson ardent » est un genre botanique de buissons persistants et épineux de la famille des Rosacées , sous-famille des Maloideae . Le mot Pyracantha vient du grec Pyros , le feu et Acantha , l'épine. Le nom de Buisson ardent est une allusion à l'épisode biblique rapporté dans l'Exode 3,2. C'est un proche parent du Cotonéaster , mais les Pyracanthas ont des feuilles dentelées coriaces de 2 à 4 cm de long et de grosses épines alors que le Cotoneaster n'en a pas. Le Pyracantha est originaire du sud de l'Europe et de l'Asie. Il peut atteindre 6 m de haut. Outre son superbe feuillage, il propose de magnifiques baies colorées à l’automne... Il donne, en fin de printemps, des fleurs blanches en corymbe, mellifères (quoique malodorantes) donnant naissance à des pommettes rouge, orange, ou jaune mûres en automne. Espèces : le genre en comprend 7 - Pyracantha coccinea Italie, l'espèce la plus rustique (intéressant, aux fruits rouges ou oranges) - Pyracantha angustifolia . Chine. - Pyracantha atalantoides . Chine. - Pyracantha crenatoserrata . Chine. Fiche bota en bref Buisson ardent Pyracantha - Pyracantha crenulata . Himalaya. - Pyracantha koidzumii . Taïwan. - Pyracantha rogersiana . Yunnan. Hybrides et cultivars autorisés à la plantation même en France - 'Golden glow', (intéressant, aux fruits jaunes) - 'America' - 'Golden Charmer' - 'Golden Dome' - 'Lalandei' - 'Mohave' Ordre : Rosales - 'Navajo' Famille : Rosaceae - 'Orange Glow' Sous-famille : Maloideae Genre -
American Bamboo Society
$5.00 AMERICAN BAMBOO SOCIETY Bamboo Species Source List No. 34 Spring 2014 This is the thirty-fourth year that the American Bamboo Several existing cultivar names are not fully in accord with Society (ABS) has compiled a Source List of bamboo plants requirements for naming cultivars. In the interests of and products. The List includes more than 510 kinds nomenclature stability, conflicts such as these are overlooked (species, subspecies, varieties, and cultivars) of bamboo to allow continued use of familiar names rather than the available in the US and Canada, and many bamboo-related creation of new ones. The Source List editors reserve the products. right to continue recognizing widely used names that may not be fully in accord with the International Code of The ABS produces the Source List as a public service. It is Nomenclature for Cultivated Plants (ICNCP) and to published on the ABS website: www.Bamboo.org . Copies are recognize identical cultivar names in different species of the sent to all ABS members and can also be ordered from ABS same genus as long as the species is stated. for $5.00 postpaid. Some ABS chapters and listed vendors also sell the Source List. Please see page 3 for ordering Many new bamboo cultivars still require naming, description, information and pages 50 and following for more information and formal publication. Growers with new cultivars should about the American Bamboo Society, its chapters, and consider publishing articles in the ABS magazine, membership application. “Bamboo.” Among other requirements, keep in mind that new cultivars must satisfy three criteria: distinctiveness, The vendor sources for plants, products, and services are uniformity, and stability. -
Download Bamboo Records (Public Information)
Status Date Accession Number Names::PlantName Names::CommonName Names::Synonym Names::Family No. Remaining Garden Area ###########2012.0256P Sirochloa parvifolia Poaceae 1 African Garden ###########1989.0217P Thamnocalamus tessellatus mountain BamBoo; "BergBamBoes" in South Africa Poaceae 1 African Garden ###########2000.0025P Aulonemia fulgor Poaceae BamBoo Garden ###########1983.0072P BamBusa Beecheyana Beechy BamBoo Sinocalamus Beechyana Poaceae 1 BamBoo Garden ###########2003.1070P BamBusa Burmanica Poaceae 1 BamBoo Garden ###########2013.0144P BamBusa chungii White BamBoo, Tropical Blue BamBoo Poaceae 1 BamBoo Garden ###########2007.0019P BamBusa chungii var. BarBelatta BarBie BamBoo Poaceae 1 BamBoo Garden ###########1981.0471P BamBusa dolichoclada 'Stripe' Poaceae 2 BamBoo Garden ###########2001.0163D BamBusa dolichoclada 'Stripe' Poaceae 1 BamBoo Garden ###########2012.0069P BamBusa dolichoclada 'Stripe' Poaceae 1 BamBoo Garden ###########1981.0079P BamBusa dolichomerithalla 'Green Stripe' Green Stripe Blowgun BamBoo Poaceae 1 BamBoo Garden ###########1981.0084P BamBusa dolichomerithalla 'Green Stripe' Green Stripe Blowgun BamBoo Poaceae 1 BamBoo Garden ###########2000.0297P BamBusa dolichomerithalla 'Silverstripe' Blowpipe BamBoo 'Silverstripe' Poaceae 1 BamBoo Garden ###########2013.0090P BamBusa emeiensis 'Flavidovirens' Poaceae 1 BamBoo Garden ###########2011.0124P BamBusa emeiensis 'Viridiflavus' Poaceae 1 BamBoo Garden ###########1997.0152P BamBusa eutuldoides Poaceae 1 BamBoo Garden ###########2003.0158P BamBusa eutuldoides -
Ornamental Grasses for the Midsouth Landscape
Ornamental Grasses for the Midsouth Landscape Ornamental grasses with their variety of form, may seem similar, grasses vary greatly, ranging from cool color, texture, and size add diversity and dimension to season to warm season grasses, from woody to herbaceous, a landscape. Not many other groups of plants can boast and from annuals to long-lived perennials. attractiveness during practically all seasons. The only time This variation has resulted in five recognized they could be considered not to contribute to the beauty of subfamilies within Poaceae. They are Arundinoideae, the landscape is the few weeks in the early spring between a unique mix of woody and herbaceous grass species; cutting back the old growth of the warm-season grasses Bambusoideae, the bamboos; Chloridoideae, warm- until the sprouting of new growth. From their emergence season herbaceous grasses; Panicoideae, also warm-season in the spring through winter, warm-season ornamental herbaceous grasses; and Pooideae, a cool-season subfamily. grasses add drama, grace, and motion to the landscape Their habitats also vary. Grasses are found across the unlike any other plants. globe, including in Antarctica. They have a strong presence One of the unique and desirable contributions in prairies, like those in the Great Plains, and savannas, like ornamental grasses make to the landscape is their sound. those in southern Africa. It is important to recognize these Anyone who has ever been in a pine forest on a windy day natural characteristics when using grasses for ornament, is aware of the ethereal music of wind against pine foliage. since they determine adaptability and management within The effect varies with the strength of the wind and the a landscape or region, as well as invasive potential. -
Anthracnose Fungi with Curved Conidia, Colletotrichum Spp
JARQ 49 (4), 351 - 362 (2015) http://www.jircas.affrc.go.jp Anthracnose Fungi with Curved Conidia, Colletotrichum spp. belonging to Ribosomal Groups 9-13, and Their Host Ranges in Japan Toyozo SATO1*, Jouji MORIWAKI2 and Shigeru KANEKO1 1 Genetic Resources Center, National Institute of Agrobiological Sciences (Tsukuba, Ibaraki 305-8602, Japan) 2 Horticulture Research Division, NARO Kyushu Okinawa Agricultural Research Center, National Agriculture and Food Research Organization (Kurume, Fukuoka 839-8503, Japan) Abstract Ninety fungal strains with falcate conidia belonging to Colletotrichum spp. classified into the ribosomal groups 9-13 (the RG 9-13 spp.) and preserved at the NIAS Genebank, Japan were re-identified based on molecular phylogenetic analysis of the internal transcribed spacer (ITS) region of the rRNA gene, sequences of the glyceraldehyde 3-phosphate dehydrogenase, chitin synthase 1, histone3, and actin genes, and partial sequences of β-tubulin-2 (TUB2) genes, or by BLASTN searches with TUB2 gene sequences. Seventy strains were reclassified into nine recently revised species, C. chlorophyti, C. circinans, C. dematium sensu stricto, C. lineola, C. liriopes, C. spaethianum, C. tofieldiae, C. trichel- lum and C. truncatum, whereas 20 strains were grouped into four unidentified species. RG 9, 10 and 12 corresponded to the C. spaethianum, C. dematium and C. truncatum species complex, respectively, while RG 11 and 13 agreed with C. chlorophyti and C. trichellum, respectively. Phylograms derived from a six-locus analysis and from TUB2 single-locus analysis were very similar to one another with the exception of the association between C. dematium s. str. and C. lineola. Thus, TUB2 partial gene sequences are proposed as an effective genetic marker to differentiate species of RG 9-13 in Japan except for C. -
Italian Botanist 10 Supplementary Data to Notulae to the Italian Alien Vascular Flora: 10 Edited by G
Italian Botanist 10 Supplementary data to Notulae to the Italian alien vascular flora: 10 Edited by G. Galasso, F. Bartolucci Categories concerning the occurrence status of taxa follow Galasso et al. (2018). 1. Nomenclatural updates Family Nomenclature according to Revised nomenclature References/Note Galasso et al. (2018) Fabaceae Acacia dealbata Link subsp. Acacia dealbata Link Hirsch et al. (2017, 2018, 2020) dealbata Pinaceae Abies nordmanniana (Steven) Abies nordmanniana (Steven) Another subspecies exists Spach Spach subsp. nordmanniana Asteraceae Centaurea iberica Spreng. subsp. Centaurea iberica Trevir. ex iberica Spreng. subsp. iberica Poaceae Digitaria ischaemum (Schreb. ex Digitaria ischaemum (Schreb.) Synonym of Digitaria violascens Schweigg.) Muhlenb. var. Muhl. var. violascens (Link) Link violascens (Link) Radford Radford Poaceae Gigachilon polonicum Seidl ex Gigachilon polonicum (L.) Seidl Synonym of Triticum turgidum Á.Löve subsp. dicoccon ex Á.Löve subsp. dicoccon L. subsp. dicoccon (Schrank ex (Schrank) Á.Löve (Schrank) Á.Löve, comb. inval. Schübl.) Thell. Poaceae Gigachilon polonicum Seidl ex Gigachilon polonicum (L.) Seidl Synonym of Triticum turgidum Á.Löve subsp. durum (Desf.) ex Á.Löve subsp. durum (Desf.) L. subsp. durum (Desf.) Husn. Á.Löve Á.Löve Poaceae Gigachilon polonicum Seidl ex Gigachilon polonicum (L.) Seidl Synonym of Triticum turgidum Á.Löve subsp. turanicum ex Á.Löve subsp. turanicum L. subsp. turanicum (Jakubz.) (Jakubz.) Á.Löve (Jakubz.) Á.Löve Á.Löve & D.Löve Poaceae Gigachilon polonicum Seidl ex Gigachilon polonicum (L.) Seidl Synonym of Triticum turgidum Á.Löve subsp. turgidum (L.) ex Á.Löve subsp. turgidum (L.) L. subsp. turgidum Á.Löve Á.Löve Balsaminaceae Impatiens cristata auct., non Impatiens tricornis Lindl. Akiyama and Ohba (2016); it is Wall. -
Invasive Plants in Southern Forests
Invasive Plants in Southern Forests United States Department of Agriculture A Field Guide for the Identification of Invasive PlantsSLIGHTLY inREVISED NOVEMBERSouthern 2015 Forests United States Forest Service Department Southern Research Station James H. Miller, Erwin B. Chambliss, and Nancy J. Loewenstein of Agriculture General Technical Report SRS–119 Authors: James H. Miller, Emeritus Research Ecologist, and Erwin B. Chambliss, Research Technician, Forest Available without charge from the Service, U.S. Department of Agriculture, Southern Research Station, Auburn University, AL 36849; and Southern Research Station Nancy J. Loewenstein, Research Fellow and Alabama Cooperative Extension System Specialist for Also available online at Forest Invasive Plants, School of Forestry and Wildlife Sciences, Auburn University, AL 36849. www.srs.fs.usda.gov/pubs/35292 and invasive.org, or as a free download for iPhones and iPads at the AppStore Front Cover Upper left—Chinese lespedeza (Lespedeza cuneata) infestation that developed from dormant seed in the soil seed bank after a forest thinning operation. Upper right—Kudzu (Pueraria montana) infestation within the urban-wildland interface. Lower left—Chinese privet (Ligustrum sinense) and dormant kudzu invading and replacing a pine- hardwood stand. Lower right—Cogongrass (Imperata cylindrica) infestation under mature slash pine (Pinus elliottii). Funding support for all printings provided by the Southern Research Station, Insect, Disease, and Invasive Plants Research Work Unit, and Forest Health Protection, Southern Region, Asheville, NC. First Printed April 2010 Slightly Revised February 2012 Revised August 2013 Reprinted January 2015 Slightly Revised November 2015 Southern Research Station 200 W.T. Weaver Blvd. Asheville, NC 28804 www.srs.fs.usda.gov i A Field Guide for the Identification of Invasive Plants in Southern Forests James H.