A New Genus of Temperate Woody Bamboos
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Phylogenomic Analyses Reveal Intractable Evolutionary History of a Temperate Bamboo Genus (Poaceae: Bambusoideae)
Plant Diversity 41 (2019) 213e219 Contents lists available at ScienceDirect Plant Diversity journal homepage: http://www.keaipublishing.com/en/journals/plant-diversity/ http://journal.kib.ac.cn Phylogenomic analyses reveal intractable evolutionary history of a temperate bamboo genus (Poaceae: Bambusoideae) ** * Cen Guo a, b, Zhen-Hua Guo a, , De-Zhu Li a, a Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, 650201, China b Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, 650201, China article info abstract Article history: Shibataea is a genus of temperate bamboos (Poaceae: Bambusoideae) endemic to China, but little is Received 12 March 2019 known about its phylogenetic position and interspecific relationships. To elucidate the phylogenetic Received in revised form relationship of the bamboo genus Shibataea, we performed genome-scale phylogenetic analysis of all 24 May 2019 seven species and one variety of the genus using double digest restriction-site associated DNA Accepted 25 May 2019 sequencing (ddRAD-seq) and whole plastid genomes generated using genome skimming. Our phyloge- Available online 31 May 2019 nomic analyses based on ddRAD-seq and plastome data congruently recovered Shibataea as mono- phyletic. The nuclear data resolved S. hispida as the earliest diverged species, followed by S. chinensis, Keywords: Shibataea while the rest of Shibataea can be further divided into two clades. However, the plastid and nuclear fl fi ddRAD-seq topologies con ict signi cantly. By comparing the results of network analysis and topologies recon- Genome skimming structed from different datasets, we identify S. kumasasa as the most admixed species, which may be Phylogeny caused by incomplete lineage sorting (ILS) or interspecific gene flow with four sympatric species. -
High-Throughput Sequencing of Six Bamboo Chloroplast Genomes: Phylogenetic Implications for Temperate Woody Bamboos (Poaceae: Bambusoideae)
High-Throughput Sequencing of Six Bamboo Chloroplast Genomes: Phylogenetic Implications for Temperate Woody Bamboos (Poaceae: Bambusoideae) Yun-Jie Zhang1,2,3., Peng-Fei Ma1,2,3., De-Zhu Li1,2* 1 Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, People’s Republic of China, 2 Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, People’s Republic of China, 3 Graduate University of Chinese Academy of Sciences, Beijing, People’s Republic of China Abstract Background: Bambusoideae is the only subfamily that contains woody members in the grass family, Poaceae. In phylogenetic analyses, Bambusoideae, Pooideae and Ehrhartoideae formed the BEP clade, yet the internal relationships of this clade are controversial. The distinctive life history (infrequent flowering and predominance of asexual reproduction) of woody bamboos makes them an interesting but taxonomically difficult group. Phylogenetic analyses based on large DNA fragments could only provide a moderate resolution of woody bamboo relationships, although a robust phylogenetic tree is needed to elucidate their evolutionary history. Phylogenomics is an alternative choice for resolving difficult phylogenies. Methodology/Principal Findings: Here we present the complete nucleotide sequences of six woody bamboo chloroplast (cp) genomes using Illumina sequencing. These genomes are similar to those of other grasses and rather conservative in evolution. We constructed a phylogeny of Poaceae from 24 complete cp genomes including 21 grass species. Within the BEP clade, we found strong support for a sister relationship between Bambusoideae and Pooideae. In a substantial improvement over prior studies, all six nodes within Bambusoideae were supported with $0.95 posterior probability from Bayesian inference and 5/6 nodes resolved with 100% bootstrap support in maximum parsimony and maximum likelihood analyses. -
Identification and Characterization of the PEBP Family Genes in Moso
www.nature.com/scientificreports OPEN Identifcation and Characterization of the PEBP Family Genes in Moso Bamboo (Phyllostachys heterocycla) Zhaohe Yang1,2, Lei Chen1,2, Markus V. Kohnen2, Bei Xiong2,3, Xi Zhen2,3, Jiakai Liao2,3, Yoshito Oka2, Qiang Zhu2, Lianfeng Gu2, Chentao Lin 2,4* & Bobin Liu1,2* Moso bamboo is one of the economically most important plants in China. Moso bamboo is a monocarpic perennial that exhibits poor and slow germination. Thus, the fowering often causes destruction of moso bamboo forestry. However, how control of fowering and seed germination are regulated in moso bamboo is largely unclear. In this study, we identifed 5 members (PhFT1-5) of the phosphatidyl ethanolamine-binding proteins (PEBP) family from moso bamboo genome that regulate fowering, fower architecture and germination, and characterized the function of these PEBP family genes further in Arabidopsis. Phylogenetic analysis revealed that 3 (PhFT1, PhFT2 and PhFT3), 1 (PhFT4) and 1 (PhFT5) members belong to the TFL1-like clade, FT-like clade, and MFT-like clade, respectively. These PEBP family genes possess all structure necessary for PEBP gene function. The ectopic overexpression of PhFT4 and PhFT5 promotes fowering time in Arabidopsis, and that of PhFT1, PhFT2 and PhFT3 suppresses it. In addition, the overexpression of PhFT5 promotes seed germination rate. Interestingly, the overexpression of PhFT1 suppressed seed germination rate in Arabidopsis. The expression of PhFT1 and PhFT5 is signifcantly higher in seed than in tissues including leaf and shoot apical meristem, implying their function in seed germination. Taken together, our results suggested that the PEBP family genes play important roles as regulators of fowering and seed germination in moso bamboo and thereby are necessary for the sustainability of moso bamboo forest. -
Drepanostachyum Falcatum (Nees) Keng F
10th World Bamboo Congress, Korea 2015 Genetic Diversity and Phylogenetic relationship among accessions of Drepanostachyum falcatum (Nees) Keng f. from the Garhwal Himalayas Chandrakant Tiwari* and Meena Bakshi Plant Physiology Discipline, Botany Division, Forest Research Institute, Dehradun-248006 (Uttarakhand), India Email: [email protected] * corresponding author Abstract:. This study assessed the genetic diversity of 10 accessions of Drepanostachyum falcatum collected from different localities in the Garhwal Himalayas, Uttarakhand, India , in the Hill bamboo germplasm collectionin Khirsu , using isozyme markers with four enzyme system (peroxidase, esterase, malate dehydrogenase and malic enzyme). Isozymatic analyses were performed with polyacrylamide gels (one system), bands were scored as binary data. Cluster analyses were conducted, using Jaccard´s similarity coefficient and UPGMA method. Very high degree of similarity was reported i.e. 63- 94% among different accessions. Dendrogram revealed two major clusters with three (A8- A10) and seven (A1- A7) accessions respectively. The results obtained suggested low genetic diversity in the species and urgent need of the in situ conservation of the natural genetic resources of the D. falcatum species. Key words: Genetic diversity; isozymes; polyacrylamide; Jaccard’s coefficient Introduction: Genetic conservation programmes are directed towards the long-term preservation of genetic resources either in situ or ex situ so that the potential for continuing evolution or improvement could be sustained. In situ conservation includes the organization and/ or servicing of natural supplies where species are permitted to stay in maximum environments with the lowest of management. On the other hand, ex situ conservation includes the use of botanic landscapes, field farms, seeds shops and gene banks and germplasm. -
Changes in Plant Functional Groups During Secondary Succession in a Tropical Montane Rain Forest
Article Changes in Plant Functional Groups during Secondary Succession in a Tropical Montane Rain Forest Kexin Fan 1,2, Jing Tao 1,3, Lipeng Zang 1,2, Jie Yao 1,2, Jihong Huang 1,2, Xinghui Lu 1,2, Yi Ding 1,2, Yue Xu 1,2 and Runguo Zang 1,2,* 1 Key Laboratory of Forest Ecology and Environment, State Forestry and Grassland Administration, Research Institute of Forest Ecology, Environment and Protection, Chinese Academy of Forestry, Beijing 100091, China; [email protected] (K.F.); [email protected] (J.T.); [email protected] (L.Z.); [email protected] (J.Y.); [email protected] (J.H.); [email protected] (X.L.); [email protected] (Y.D.); [email protected] (Y.X.) 2 Co-Innovation Center for Sustainable Forestry in Southern China, Nanjing Forestry University, Nanjing 210037, China 3 Yunnan Institute of Forestry Inventory and Planning, Kunming 650051, China * Correspondence: [email protected]; Tel.: +86-010-6288-9546 Received: 18 October 2019; Accepted: 10 December 2019; Published: 12 December 2019 Abstract: Aggregating diverse plant species into a few functional groups based on functional traits provides new insights for promoting landscape planning and conserving biodiversity in species-diverse regions. Ecophysiological traits are the basis of the functioning of an ecosystem. However, studies related to the identification of functional groups based on plant ecophysiological traits in tropical forests are still scarce because of the inherent difficulties in measuring them. In this study, we measured five ecophysiological traits: net photosynthetic capacity (Amax), maximum stomatal conductance (gmax), water use efficiency (WUE), transpiration rate (Trmmol), and specific leaf areas (SLA) for 87 plant species dominant in a chronosequence of secondary succession, using four time periods (5 year-primary, 15 year-early, and 40 year-middle successional stages after clear cutting and old growth) in the tropical montane rainforest on Hainan Island, China. -
American Bamboo Society
$5.00 AMERICAN BAMBOO SOCIETY Bamboo Species Source List No. 34 Spring 2014 This is the thirty-fourth year that the American Bamboo Several existing cultivar names are not fully in accord with Society (ABS) has compiled a Source List of bamboo plants requirements for naming cultivars. In the interests of and products. The List includes more than 510 kinds nomenclature stability, conflicts such as these are overlooked (species, subspecies, varieties, and cultivars) of bamboo to allow continued use of familiar names rather than the available in the US and Canada, and many bamboo-related creation of new ones. The Source List editors reserve the products. right to continue recognizing widely used names that may not be fully in accord with the International Code of The ABS produces the Source List as a public service. It is Nomenclature for Cultivated Plants (ICNCP) and to published on the ABS website: www.Bamboo.org . Copies are recognize identical cultivar names in different species of the sent to all ABS members and can also be ordered from ABS same genus as long as the species is stated. for $5.00 postpaid. Some ABS chapters and listed vendors also sell the Source List. Please see page 3 for ordering Many new bamboo cultivars still require naming, description, information and pages 50 and following for more information and formal publication. Growers with new cultivars should about the American Bamboo Society, its chapters, and consider publishing articles in the ABS magazine, membership application. “Bamboo.” Among other requirements, keep in mind that new cultivars must satisfy three criteria: distinctiveness, The vendor sources for plants, products, and services are uniformity, and stability. -
Download Bamboo Records (Public Information)
Status Date Accession Number Names::PlantName Names::CommonName Names::Synonym Names::Family No. Remaining Garden Area ###########2012.0256P Sirochloa parvifolia Poaceae 1 African Garden ###########1989.0217P Thamnocalamus tessellatus mountain BamBoo; "BergBamBoes" in South Africa Poaceae 1 African Garden ###########2000.0025P Aulonemia fulgor Poaceae BamBoo Garden ###########1983.0072P BamBusa Beecheyana Beechy BamBoo Sinocalamus Beechyana Poaceae 1 BamBoo Garden ###########2003.1070P BamBusa Burmanica Poaceae 1 BamBoo Garden ###########2013.0144P BamBusa chungii White BamBoo, Tropical Blue BamBoo Poaceae 1 BamBoo Garden ###########2007.0019P BamBusa chungii var. BarBelatta BarBie BamBoo Poaceae 1 BamBoo Garden ###########1981.0471P BamBusa dolichoclada 'Stripe' Poaceae 2 BamBoo Garden ###########2001.0163D BamBusa dolichoclada 'Stripe' Poaceae 1 BamBoo Garden ###########2012.0069P BamBusa dolichoclada 'Stripe' Poaceae 1 BamBoo Garden ###########1981.0079P BamBusa dolichomerithalla 'Green Stripe' Green Stripe Blowgun BamBoo Poaceae 1 BamBoo Garden ###########1981.0084P BamBusa dolichomerithalla 'Green Stripe' Green Stripe Blowgun BamBoo Poaceae 1 BamBoo Garden ###########2000.0297P BamBusa dolichomerithalla 'Silverstripe' Blowpipe BamBoo 'Silverstripe' Poaceae 1 BamBoo Garden ###########2013.0090P BamBusa emeiensis 'Flavidovirens' Poaceae 1 BamBoo Garden ###########2011.0124P BamBusa emeiensis 'Viridiflavus' Poaceae 1 BamBoo Garden ###########1997.0152P BamBusa eutuldoides Poaceae 1 BamBoo Garden ###########2003.0158P BamBusa eutuldoides -
Forestry Department ON
Forestry Department Food and Agriculture Organization of the United Nations International Network for Bamboo and Rattan (INBAR) GLOBAL FOREST RESOURCES ASSESSMENT 2005 INDIA COUNTRY REPORT ON BAMBOO RESOURCES NEW DELHI, MAY 2005 Global Forest Resources Assessment 2005 Working Paper 118 1 Rome, 2006 FRA WP 118 Country Report on Bamboo Resources India TABLE OF CONTENTS GENERAL GUIDELINES --------------------------------------------------------------------------- 3 GENERAL INFORMATION ----------------------------------------------------------------------- 3 1 TABLE T1 – EXTENT OF BAMBOO FORESTS----------------------------------------- 3 1.1 GBRA 2005 CATEGORIES AND DEFINITIONS------------------------------------------------------- 3 1.2 NATIONAL DATA ON BAMBOO RESOURCES -------------------------------------------------------- 3 1.2.1 Data sources ------------------------------------------------------------------------------------------------------------3 1.2.2 Classification and definitions --------------------------------------------------------------------------------------------3 1.2.3 Original data------------------------------------------------------------------------------------------------------------3 1.3 DATA FOR NATIONAL REPORTING TABLE T1------------------------------------------------------ 3 1.4 COMMENTS TO NATIONAL REPORTING TABLE T1 ------------------------------------------------ 3 2 TABLE T2 – OWNERSHIP OF BAMBOO FORESTS ---------------------------------- 3 2.1 GBRA 2005 CATEGORIES AND DEFINITIONS------------------------------------------------------- -
Bamboos in Manual of Afforestation in Nepal
MANUAL OF AFFORESTATION IN NEPAL J. K. Jackson Silviculturist, Forestry Research Project with sections on Bamboos by C.M.A. Stapleton and Daphne by J.—P. Jeanrenaud Nepal-United Kingdom Forestry Research Project Forest Survey and Research Office Department of Forest Kathmandu, Nepal 1987 Bamboos Gramineae by C.M.A. Stapleton Occurrence and importance Until recently little was known about the identity, distribution, and uses in Nepal of the different species of bamboo. The standard reference, Gamble (1896), is not at all adequate for identification purposes in Nepal, and the herbarium specimens available are not well determined. This is understandab1e as Nepal has not been adequately covered by bamboo taxonomists in the past, and also as accurate identification of bamboo specimens requires both flowers and vegetative material. As most bamboos do not flower frequently and many species drop all their leaves and culm sheaths when they do flower, these are not usually available together, so that specimens are fragmentary. A few publications have named species from Nepal, but these have often been more guesswork than accurate identification. However, Seeland (1980) studied the names and uses of the seven bamboo species known near a village in east Nepal and successfully identified the five most important. Acharya (1975) wrote a sensible feasibility study of bamboo as the basis of cottage industry expansion in central Nepal without attempting specific identification. He used the three categories into which bamboo species are most commonly grouped in Nepali: bans, nigalo, and malingo. These three groups probably constituted a more rational taxonomy at that time than the official genera. -
Download Pdf of Bamboos of Nepal
AN ILLUSTRATED GUIDE Chris Stapleton Illustrations of the genera and species, with notes on identification, distribution, utilisation, and propagation BAMBOOS OF NEPAL: AN ILLUSTRATED GUIDE Chris Stapleton Forestry Department, University of Aberdeen Royal Botanic Garden Edinburgh Royal Botanic Gardens Kew in association with Forestry Research and Information Centre Department of Forestry and Plant Research His Majesty’ s Government of Nepal Kathmandu Royal Botanic Gardens, Kew, on behalf of The Overseas Development Administration, London Forestry Research Programme, University of Oxford Published by The Royal Botanic Gardens, Kew for The OverseasDevelopment Administrationof the BritishGovernment ForestryResearch Programme Universityof Oxford, Halifax House, 6 South Parks,Road, Oxford OX1 3UB All rights reserved.This book is protected by copyright. No part of it may be reproduced, stored in a retrievalsystem, or transmitted,in any form or by any means, electronic, mechanical, photocopying, recording, or otherwisewithout written permission from the copyright holders. Firstpublished 1994 Design, illustrations,and layout by the author, Cover by Media Resources, RBG Kew, Research for this guide and its production were funded by the OverseasDevelopment Administration,under research grantsR4195 and R4849. Field work was implemented by the ForestryDepartment of Aberdeen Universityin conjunction with the Department of Forestryand Plant Research of His Majesty’s Government of Nepal. Illustrationsand camera-readycopy were produced at the Royal Botanic -
Status of Bamboo in India
International Journal of Economic Plants 2019, 6(1):030-039 Review Article Doi: HTTPS://DOI.ORG/10.23910/IJEP/2019.6.1.0288 Status of Bamboo in India Salil Tewari1*, Harshita Negi1 and R. Kaushal2 1Dept. of Genetics and Plant Breeding, College of Agriculture, G.B. Pant University of Agriculture and Technology, Pantnagar, Uttrakhand (263 145), India 2ICAR-Indian Institute of Soil and Water Conservation, Dehradun, Uttrakhand (248 195), India Corresponding Author Article History Salil Tewari Article ID: IJEP0288 e-mail: [email protected] Received in 15th February, 2019 Received in revised form 21st February, 2019 Accepted in final form 24th February, 2019 Abstract Bamboos are very important forest resources found in the forest as well as the non-forest area in the country. The total bamboo bearing area of India is estimated to be 15.69 million hectares. Endemism in Indian bamboos is of a very high order. The maximum concentration of species is found in the deciduous and semi-evergreen regions of North-east and the tropical moist deciduous forests of North and South India. The North-eastern hilly States of India harbor nearly 90 species of bamboos, 41 of which are endemic to that region. There are 3 large genera (Bambusa, Dendrocalamus, and Ochlandra) of bamboos in India with more than 10 species each. Together, these three genera represent about 45% of the total bamboo species found in India. On the other hand, there are some genera which are represented by only one species each e.g. Ampelocalamus, Sarocalamus, Chimonobambusa, Pseudostachyum and Stapletonia. Bamboos in India show a great diversity in both their habitat and habit of growth. -
THE BAMBOOS of NEPAL and BHUTAN PART III: Drepanostachyum, Himalayacalamus, Ampelocalamus, Neomicrocalamus and Chimonobambusa (Gramineae: Poaceae, Bambusoideae)
EDINB. J. BOT. 51(3): 301–330 (1994) THE BAMBOOS OF NEPAL AND BHUTAN PART III: Drepanostachyum, Himalayacalamus, Ampelocalamus, Neomicrocalamus and Chimonobambusa (Gramineae: Poaceae, Bambusoideae) C. M. A. S TAPLETON * This paper completes the systematic treatment of the bamboos of Nepal and Bhutan, covering five genera from subtropical to lower temperate zones. Three further genera from the subtribe Arundinariinae Bentham are included: Drepanostachyum Keng f., Himalayacalamus Keng f., and Ampelocalamus Chen, Wen & Sheng . They have semelauctant ebracteate inflorescences, pachymorph rhizomes, and 3 stamens. Neomicrocalamus Keng f. has semel- auctant bracteate inflorescences and 6 stamens, and is in the new subtribe described here, Racemobambosinae. Chimonobambusa Makino has bracteate inflorescences and 3 stamens and is the only Himalayan genus in the subtribe Shibataeinae (Nakai) Soderstrom & Ellis. A new Drepanostachyum species from Bhutan is described as D. annulatum. Himalayacalamus , which was originally described as a monotypic genus, is enlarged by the description of five new species, H. asper , H. brevinodus , H. cupreus , H. fimbriatus , and H. porcatus , all from Nepal. A Himalayan representative of the genus Ampelocalamus , A. patellaris , is transferred from Dendrocalamus. Neomicrocalamus andro- pogonifolius from eastern Bhutan is transferred from Bambusa . STATUS AND S EPARATION OF THE G ENERA These genera have all been considered to be part of Arundinaria Michaux at one time. The type species of the genera Drepanostachyum Keng f. , Ampelocalamus Chen, Wen & Sheng, Neomicrocalamus Keng f., and Chimonobambusa Makino were originally described as species of Arundinaria Michaux, while the type species of Himalayacalamus was initially described as a species of Thamnocalamus Munro, before being transferred into Arundinaria .