The Good Luck Or Fortune-Inviting Bamboo, Shibataea Kumasaca
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Phylogenomic Analyses Reveal Intractable Evolutionary History of a Temperate Bamboo Genus (Poaceae: Bambusoideae)
Plant Diversity 41 (2019) 213e219 Contents lists available at ScienceDirect Plant Diversity journal homepage: http://www.keaipublishing.com/en/journals/plant-diversity/ http://journal.kib.ac.cn Phylogenomic analyses reveal intractable evolutionary history of a temperate bamboo genus (Poaceae: Bambusoideae) ** * Cen Guo a, b, Zhen-Hua Guo a, , De-Zhu Li a, a Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, 650201, China b Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming, Yunnan, 650201, China article info abstract Article history: Shibataea is a genus of temperate bamboos (Poaceae: Bambusoideae) endemic to China, but little is Received 12 March 2019 known about its phylogenetic position and interspecific relationships. To elucidate the phylogenetic Received in revised form relationship of the bamboo genus Shibataea, we performed genome-scale phylogenetic analysis of all 24 May 2019 seven species and one variety of the genus using double digest restriction-site associated DNA Accepted 25 May 2019 sequencing (ddRAD-seq) and whole plastid genomes generated using genome skimming. Our phyloge- Available online 31 May 2019 nomic analyses based on ddRAD-seq and plastome data congruently recovered Shibataea as mono- phyletic. The nuclear data resolved S. hispida as the earliest diverged species, followed by S. chinensis, Keywords: Shibataea while the rest of Shibataea can be further divided into two clades. However, the plastid and nuclear fl fi ddRAD-seq topologies con ict signi cantly. By comparing the results of network analysis and topologies recon- Genome skimming structed from different datasets, we identify S. kumasasa as the most admixed species, which may be Phylogeny caused by incomplete lineage sorting (ILS) or interspecific gene flow with four sympatric species. -
High-Throughput Sequencing of Six Bamboo Chloroplast Genomes: Phylogenetic Implications for Temperate Woody Bamboos (Poaceae: Bambusoideae)
High-Throughput Sequencing of Six Bamboo Chloroplast Genomes: Phylogenetic Implications for Temperate Woody Bamboos (Poaceae: Bambusoideae) Yun-Jie Zhang1,2,3., Peng-Fei Ma1,2,3., De-Zhu Li1,2* 1 Key Laboratory of Biodiversity and Biogeography, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, People’s Republic of China, 2 Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, People’s Republic of China, 3 Graduate University of Chinese Academy of Sciences, Beijing, People’s Republic of China Abstract Background: Bambusoideae is the only subfamily that contains woody members in the grass family, Poaceae. In phylogenetic analyses, Bambusoideae, Pooideae and Ehrhartoideae formed the BEP clade, yet the internal relationships of this clade are controversial. The distinctive life history (infrequent flowering and predominance of asexual reproduction) of woody bamboos makes them an interesting but taxonomically difficult group. Phylogenetic analyses based on large DNA fragments could only provide a moderate resolution of woody bamboo relationships, although a robust phylogenetic tree is needed to elucidate their evolutionary history. Phylogenomics is an alternative choice for resolving difficult phylogenies. Methodology/Principal Findings: Here we present the complete nucleotide sequences of six woody bamboo chloroplast (cp) genomes using Illumina sequencing. These genomes are similar to those of other grasses and rather conservative in evolution. We constructed a phylogeny of Poaceae from 24 complete cp genomes including 21 grass species. Within the BEP clade, we found strong support for a sister relationship between Bambusoideae and Pooideae. In a substantial improvement over prior studies, all six nodes within Bambusoideae were supported with $0.95 posterior probability from Bayesian inference and 5/6 nodes resolved with 100% bootstrap support in maximum parsimony and maximum likelihood analyses. -
Identification and Characterization of the PEBP Family Genes in Moso
www.nature.com/scientificreports OPEN Identifcation and Characterization of the PEBP Family Genes in Moso Bamboo (Phyllostachys heterocycla) Zhaohe Yang1,2, Lei Chen1,2, Markus V. Kohnen2, Bei Xiong2,3, Xi Zhen2,3, Jiakai Liao2,3, Yoshito Oka2, Qiang Zhu2, Lianfeng Gu2, Chentao Lin 2,4* & Bobin Liu1,2* Moso bamboo is one of the economically most important plants in China. Moso bamboo is a monocarpic perennial that exhibits poor and slow germination. Thus, the fowering often causes destruction of moso bamboo forestry. However, how control of fowering and seed germination are regulated in moso bamboo is largely unclear. In this study, we identifed 5 members (PhFT1-5) of the phosphatidyl ethanolamine-binding proteins (PEBP) family from moso bamboo genome that regulate fowering, fower architecture and germination, and characterized the function of these PEBP family genes further in Arabidopsis. Phylogenetic analysis revealed that 3 (PhFT1, PhFT2 and PhFT3), 1 (PhFT4) and 1 (PhFT5) members belong to the TFL1-like clade, FT-like clade, and MFT-like clade, respectively. These PEBP family genes possess all structure necessary for PEBP gene function. The ectopic overexpression of PhFT4 and PhFT5 promotes fowering time in Arabidopsis, and that of PhFT1, PhFT2 and PhFT3 suppresses it. In addition, the overexpression of PhFT5 promotes seed germination rate. Interestingly, the overexpression of PhFT1 suppressed seed germination rate in Arabidopsis. The expression of PhFT1 and PhFT5 is signifcantly higher in seed than in tissues including leaf and shoot apical meristem, implying their function in seed germination. Taken together, our results suggested that the PEBP family genes play important roles as regulators of fowering and seed germination in moso bamboo and thereby are necessary for the sustainability of moso bamboo forest. -
American Bamboo Society
$5.00 AMERICAN BAMBOO SOCIETY Bamboo Species Source List No. 34 Spring 2014 This is the thirty-fourth year that the American Bamboo Several existing cultivar names are not fully in accord with Society (ABS) has compiled a Source List of bamboo plants requirements for naming cultivars. In the interests of and products. The List includes more than 510 kinds nomenclature stability, conflicts such as these are overlooked (species, subspecies, varieties, and cultivars) of bamboo to allow continued use of familiar names rather than the available in the US and Canada, and many bamboo-related creation of new ones. The Source List editors reserve the products. right to continue recognizing widely used names that may not be fully in accord with the International Code of The ABS produces the Source List as a public service. It is Nomenclature for Cultivated Plants (ICNCP) and to published on the ABS website: www.Bamboo.org . Copies are recognize identical cultivar names in different species of the sent to all ABS members and can also be ordered from ABS same genus as long as the species is stated. for $5.00 postpaid. Some ABS chapters and listed vendors also sell the Source List. Please see page 3 for ordering Many new bamboo cultivars still require naming, description, information and pages 50 and following for more information and formal publication. Growers with new cultivars should about the American Bamboo Society, its chapters, and consider publishing articles in the ABS magazine, membership application. “Bamboo.” Among other requirements, keep in mind that new cultivars must satisfy three criteria: distinctiveness, The vendor sources for plants, products, and services are uniformity, and stability. -
Download Bamboo Records (Public Information)
Status Date Accession Number Names::PlantName Names::CommonName Names::Synonym Names::Family No. Remaining Garden Area ###########2012.0256P Sirochloa parvifolia Poaceae 1 African Garden ###########1989.0217P Thamnocalamus tessellatus mountain BamBoo; "BergBamBoes" in South Africa Poaceae 1 African Garden ###########2000.0025P Aulonemia fulgor Poaceae BamBoo Garden ###########1983.0072P BamBusa Beecheyana Beechy BamBoo Sinocalamus Beechyana Poaceae 1 BamBoo Garden ###########2003.1070P BamBusa Burmanica Poaceae 1 BamBoo Garden ###########2013.0144P BamBusa chungii White BamBoo, Tropical Blue BamBoo Poaceae 1 BamBoo Garden ###########2007.0019P BamBusa chungii var. BarBelatta BarBie BamBoo Poaceae 1 BamBoo Garden ###########1981.0471P BamBusa dolichoclada 'Stripe' Poaceae 2 BamBoo Garden ###########2001.0163D BamBusa dolichoclada 'Stripe' Poaceae 1 BamBoo Garden ###########2012.0069P BamBusa dolichoclada 'Stripe' Poaceae 1 BamBoo Garden ###########1981.0079P BamBusa dolichomerithalla 'Green Stripe' Green Stripe Blowgun BamBoo Poaceae 1 BamBoo Garden ###########1981.0084P BamBusa dolichomerithalla 'Green Stripe' Green Stripe Blowgun BamBoo Poaceae 1 BamBoo Garden ###########2000.0297P BamBusa dolichomerithalla 'Silverstripe' Blowpipe BamBoo 'Silverstripe' Poaceae 1 BamBoo Garden ###########2013.0090P BamBusa emeiensis 'Flavidovirens' Poaceae 1 BamBoo Garden ###########2011.0124P BamBusa emeiensis 'Viridiflavus' Poaceae 1 BamBoo Garden ###########1997.0152P BamBusa eutuldoides Poaceae 1 BamBoo Garden ###########2003.0158P BamBusa eutuldoides -
Ornamental Grasses for the Midsouth Landscape
Ornamental Grasses for the Midsouth Landscape Ornamental grasses with their variety of form, may seem similar, grasses vary greatly, ranging from cool color, texture, and size add diversity and dimension to season to warm season grasses, from woody to herbaceous, a landscape. Not many other groups of plants can boast and from annuals to long-lived perennials. attractiveness during practically all seasons. The only time This variation has resulted in five recognized they could be considered not to contribute to the beauty of subfamilies within Poaceae. They are Arundinoideae, the landscape is the few weeks in the early spring between a unique mix of woody and herbaceous grass species; cutting back the old growth of the warm-season grasses Bambusoideae, the bamboos; Chloridoideae, warm- until the sprouting of new growth. From their emergence season herbaceous grasses; Panicoideae, also warm-season in the spring through winter, warm-season ornamental herbaceous grasses; and Pooideae, a cool-season subfamily. grasses add drama, grace, and motion to the landscape Their habitats also vary. Grasses are found across the unlike any other plants. globe, including in Antarctica. They have a strong presence One of the unique and desirable contributions in prairies, like those in the Great Plains, and savannas, like ornamental grasses make to the landscape is their sound. those in southern Africa. It is important to recognize these Anyone who has ever been in a pine forest on a windy day natural characteristics when using grasses for ornament, is aware of the ethereal music of wind against pine foliage. since they determine adaptability and management within The effect varies with the strength of the wind and the a landscape or region, as well as invasive potential. -
Anthracnose Fungi with Curved Conidia, Colletotrichum Spp
JARQ 49 (4), 351 - 362 (2015) http://www.jircas.affrc.go.jp Anthracnose Fungi with Curved Conidia, Colletotrichum spp. belonging to Ribosomal Groups 9-13, and Their Host Ranges in Japan Toyozo SATO1*, Jouji MORIWAKI2 and Shigeru KANEKO1 1 Genetic Resources Center, National Institute of Agrobiological Sciences (Tsukuba, Ibaraki 305-8602, Japan) 2 Horticulture Research Division, NARO Kyushu Okinawa Agricultural Research Center, National Agriculture and Food Research Organization (Kurume, Fukuoka 839-8503, Japan) Abstract Ninety fungal strains with falcate conidia belonging to Colletotrichum spp. classified into the ribosomal groups 9-13 (the RG 9-13 spp.) and preserved at the NIAS Genebank, Japan were re-identified based on molecular phylogenetic analysis of the internal transcribed spacer (ITS) region of the rRNA gene, sequences of the glyceraldehyde 3-phosphate dehydrogenase, chitin synthase 1, histone3, and actin genes, and partial sequences of β-tubulin-2 (TUB2) genes, or by BLASTN searches with TUB2 gene sequences. Seventy strains were reclassified into nine recently revised species, C. chlorophyti, C. circinans, C. dematium sensu stricto, C. lineola, C. liriopes, C. spaethianum, C. tofieldiae, C. trichel- lum and C. truncatum, whereas 20 strains were grouped into four unidentified species. RG 9, 10 and 12 corresponded to the C. spaethianum, C. dematium and C. truncatum species complex, respectively, while RG 11 and 13 agreed with C. chlorophyti and C. trichellum, respectively. Phylograms derived from a six-locus analysis and from TUB2 single-locus analysis were very similar to one another with the exception of the association between C. dematium s. str. and C. lineola. Thus, TUB2 partial gene sequences are proposed as an effective genetic marker to differentiate species of RG 9-13 in Japan except for C. -
A New Genus of Temperate Woody Bamboos
A peer-reviewed open-access journal PhytoKeys 109: 67–76 (2018) A new genus of temperate woody bamboos... 67 doi: 10.3897/phytokeys.109.27566 RESEARCH ARTICLE http://phytokeys.pensoft.net Launched to accelerate biodiversity research A new genus of temperate woody bamboos (Poaceae, Bambusoideae, Arundinarieae) from a limestone montane area of China Yu-Xiao Zhang1,2, Peng-Fei Ma2, De-Zhu Li2 1 Yunnan Academy of Biodiversity, Southwest Forestry University, Kunming, Yunnan 650224, China 2 Germplasm Bank of Wild Species, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan 650201, China Corresponding author: De-Zhu Li ([email protected]) Academic editor: C. Morden | Received 19 June 2018 | Accepted 12 September 2018 | Published 12 October 2018 Citation: Zhang Y-X, Ma P-F, Li D-Z (2018) A new genus of temperate woody bamboos (Poaceae, Bambusoideae, Arundinarieae) from a limestone montane area of China. PhytoKeys 109: 67–76. https://doi.org/10.3897/ phytokeys.109.27566 Abstract Ampelocalamus calcareus is a climbing and slender bamboo, known from south Guizhou, China. This species grows in broadleaved forests of limestone montane areas. Recent molecular phylogenetic analyses demonstrated that A. calcareus was sister to all other lineages of the tribe Arundinarieae rather than a member of Ampelocalamus. The morphological features and habitats of A. calcareus and related genera including Ampelocalamus, Drepanostachyum and Himalayacalamus were compared and discussed. The characteristics of the branch complements, nodes and foliage leaves distinguish A. calcareus from morpho- logically similar taxa. On the basis of molecular and morphological evidence, we propose to establish a new genus, Hsuehochloa, to accommodate A. -
Large Trees, Supertrees and the Grass Phylogeny
LARGE TREES, SUPERTREES AND THE GRASS PHYLOGENY Thesis submitted to the University of Dublin, Trinity College for the Degree of Doctor of Philosophy (Ph.D.) by Nicolas Salamin Department of Botany University of Dublin, Trinity College 2002 Research conducted under the supervision of Dr. Trevor R. Hodkinson Department of Botany, University of Dublin, Trinity College Dr. Vincent Savolainen Jodrell Laboratory, Molecular Systematics Section, Royal Botanic Gardens, Kew, London DECLARATION I thereby certify that this thesis has not been submitted as an exercise for a degree at any other University. This thesis contains research based on my own work, except where otherwise stated. I grant full permission to the Library of Trinity College to lend or copy this thesis upon request. SIGNED: ACKNOWLEDGMENTS I wish to thank Trevor Hodkinson and Vincent Savolainen for all the encouragement they gave me during the last three years. They provided very useful advice on scientific papers, presentation lectures and all aspects of the supervision of this thesis. It has been a great experience to work in Ireland, and I am especially grateful to Trevor for the warm welcome and all the help he gave me, at work or outside work, since the beginning of this Ph.D. in the Botany Department. I will always remember his patience and kindness to me at this time. I am also grateful to Vincent for his help and warm welcome during the different periods of time I stayed in London, but especially for all he did for me since my B.Sc. at the University of Lausanne. I wish also to thank Prof. -
Hortax Presentation
HORTAX CULTIVATED PLANT TAXONOMY GROUP Muddles and misapplications: taxonomic difficulties associated with bamboos in cultivation Chris Stapleton bamboo-identification.co.uk formerly: University of Aberdeen Forestry Department Royal Botanic Garden Edinburgh Royal Botanic Gardens Kew Presentation roughly as given in 2015, updated a little in 2021. Here I illustrate the problem – multiple names in the UK for the same cultivated plant. Genus, species & cultivar names all varying on displayed and marketed plants. All these are the same species. To decide which name is correct Steve Renvoize & I had to go as far as conserving a species name in the journal Taxon. The genus Pleioblastus is considered appropriate on the grounds of morphology and molecular data. In that genus it is now correctly called Pleioblastus viridistriatus, but you will still see these other names around. Popping in to Tesco’s, I saw a nice little bamboo plant on the stands outside. It had an authoritative label, saying Fountain Bamboo. It is not Fountain Bamboo, which is Fargesia nitida. On the back it says Fargesia rufa, which it also is not. It is actually Fargesia dracocephala ‘Rufa’, Dragon-head Bamboo. It also says it comes from the mountains of western China, while in fact it comes from Central China, but that is not so important as getting the name so wrong. How have we got into this position in Europe? This disinformation would not happen in the US, where we have verified and standardised bamboo names for most of the horticulturally available bamboos. Stapleton, C. M. A. & Renvoize, S. A. (2001). Proposal to conserve the name Bambusa viridistriata Siebold ex André (Poaceae, Bambusoideae). -
Bamboo: an Underutilized Resource with Extensive Application Possibilities
Bamboo: An Underutilized Resource with Extensive Application Possibilities Melanie Harrison-Dunn1 and Michael Hotchkiss2 1 USDA, ARS, Plant Genetic Resources Conservation Unit, Griffin, GA 2 USDA, ARS, Southeastern Fruit and Tree Nut Research Laboratory, Byron, GA The USDA Collection The USDA Temperate Bamboo Collection was first Introduction established in Savannah, Georgia in 1919. Its humble Bamboo comprises a diverse set of ~115 genera with beginnings began as a small one acre grove of Japanese Uses of Bamboo ~1070 species within the Poaceae family. Although Timber Bamboo (Phyllostachys bambusoides). The station morphologically similar to other grasses in several aspects, was then known as the Barbour Lathrop Plant Introduction • Bioenergy crop bamboo has distinct features such as woody culms and broad Station. The collection grew over the next few decades • Textiles (eg. flooring, veneers, plywood, etc) leaves that distinguish it from other grasses. Bamboo into a valuable collection increasing in number of genera • Fabric (comparable to silk) naturally occurs in both tropical and temperate climates with and species. The bamboo was moved to the Southeastern • Forage the majority of species being tropical in origin. There are two Fruit and Tree Nut Station in Byron, Georgia between 1976 • Ornamental main types of bamboo based on the growing habit of the and 1980. • Edible shoots rhizomes - sympodial and monopodial. In sympodial species • Musical instruments (runners), the rhizomes are long and thin and spread out The collection in Byron is maintained by the USDA Plant • Bows and arrows rapidly. In monopodial species (clumpers), the rhizomes are Genetic Resources Conservation Unit which is a part of • Common household items (eg. -
1 503-647-2700 Front Page- Need Hi
front page- need Hi res closeup www.bamboogarden.com 1 503-647-2700 Forward by Ted Meredith Bamboo Garden is very special. Founded in 1984, Bamboo Garden has a diverse collection of more than 300 bamboo species and forms on 20 pastoral acres near North Plains, Oregon. Here mature bamboo groves are cast in a beautiful natural setting of rolling hills, ponds, mountain stream, and wooded backdrop. Customers of the nursery are offered golf cart tours of the extensive grounds. Europe has a number of splendid bamboo gardens, and a few very famous ones that are connected with a bamboo nursery, where one can see many species of bamboo in mature natural groves and then have the opportunity to purchase the same bamboos for one’s own garden. America now has an equivalent in the Bamboo Garden. Owner Ned Jaquith, an ardent bamboo enthusiast, has introduced countless people to the world of bamboo and served as a mentor to countless more---myself included. Nothing seems to please Ned more than introducing another person to bamboo. His welcom- ing enthusiasm carries through to the Bamboo Gar- den’s knowledgeable staff, who are adept at discuss- ing bamboos with experts and novices alike. Nursery manager Noah Bell oversees the operation, includ- ing nursery, office, and sales. Maintenance foreman Reveriano Ramirez directs bamboo propagation and care. Bamboo Garden is an impressive operation with many fine people in key roles working to make it so. Like Bamboo Garden, the Bamboo Garden catalog is something special too. The bamboos are beautifully photographed and described (Noah and Ned did most of the photography themselves) with clear illustra- tions that show how to maintain bamboo (credit to Charissa Brock for illustrations and layout design) .