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Macadamia Integrifolia HAES 741)
bioRxiv preprint doi: https://doi.org/10.1101/2020.05.25.114009; this version posted May 27, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. Chromosome-scale assembly and annotation of the macadamia genome (Macadamia integrifolia HAES 741) Catherine J. Nock1†*, Abdul Baten1,2†, Ramil Mauleon1, Kirsty S. Langdon1, Bruce Topp3, Craig Hardner3, Agnelo Furtado3, Robert J. Henry3 and Graham J. King1 1Southern Cross Plant Science, Southern Cross University, Lismore NSW 2480, Australia 2AgResearch NZ, Grasslands Research Centre, Palmerston North 4442, New Zealand 3Queensland Alliance for Agriculture and Food Innovation, University of Queensland, St Lucia QLD 4069, Australia †These authors contributed equally to this work *Corresponding author, [email protected] ORCID 0000-0001-5609-4681 Abstract Macadamia integrifolia is a representative of the large basal eudicot family Proteaceae and the main progenitor species of the Australian native nut crop macadamia. Since its commercialisation in Hawaii fewer than 100 years ago, global production has expanded rapidly. However, genomic resources are limited in comparison to other horticultural crops. The first draft assembly of M. integrifolia had good coverage of the functional gene space but its high fragmentation has restricted its use in comparative genomics and association studies. Here we have generated an improved assembly of cultivar HAES 741 (4,094 scaffolds, 745 Mb, N50 413 kb) using a combination of Illumina paired and PacBio long read sequences. -
IV. on the Proteaceć of Jussieu. by Mr. Robert Brown, Lib. LS
IV. On the Proteacea of Jussieu. By -Mr. Robert Brown, Lib. L.S. Read Jan. 17, 1809. THELinnean system of botany, though confessedly artificial, has not only contributed more than all others to facilitate tlie knowledge of species, but, by constantly directing the attention to those essential parts of the flower on which it is founded, has made us acquainted with more of their important modific-a t’ ions than we probably should have known, had it not been generally adopted, and has thus laid a more solid foundation for the esta- blishment of a natural arrangement, the superior importance of which no one has been inore fully impressed with than Linnzus hiinself. There are still, however, certain circumstances respccting the stamina and pistilla, which appear to iiie to havc been much less attended to than they deserve, both by Linneus and succeeding botanists. What I chiefly allude to is the state of these organs before the expansion of the flower. Tlie utility of ascertaining the internal condition of the ovarium before fecundation will liardly be called in question, now that the immortal worlis of Gxrtner and Jussieu hare demonstrated the necessity of minutely studying the fruits of plants in attempting to arrange tlicin ac- cording to tlic sum of their affinities, as in many cases the true nature of tlie ripc fruit, cspecially witli respect to the placenta- tion of the seeds, can oiily be detcrniined by this mc;~ns. Its importance is indeed expressly inculcated by many l~ot:inists, Tf’llO, 16 Mr. BROWN,on the Proteacee of Jussieu. -
Approved NSW & National Recovery Plan Eidothea Hardeniana
Approved NSW & National Recovery Plan Eidothea hardeniana September 2004 © Department of Environment and Conservation (NSW), July 2004. This work is copyright. However, material presented in this plan may be copied for personal use or published for educational purposes, providing that any extracts are fully acknowledged. Apart from this and any other use as permitted under the Copyright Act 1968, no part may be reproduced without prior written permission from NSW Department of Environment and Conservation. NSW Department of Environment and Conservation 43 Bridge Street (PO Box 1967) Hurstville NSW 2220 Tel: 02 9585 6444 www.nationalparks.nsw.gov.au Requests for information or comments regarding the recovery program for the Nightcap Oak are best directed to: The Nightcap Oak Recovery Co-ordinator Threatened Species Unit, North East Branch NSW Department of Environment and Conservation Locked Bag 914 Coffs Harbour NSW 2450 Tel: 02 6651 5946 Cover illustrator: Lesley Elkan © Botanic Gardens Trust, Sydney Cover illustration: Adult and juvenile leaves and fruit of Eidothea hardeniana This plan should be cited as follows: NSW Department of Environment and Conservation 2004, Recovery Plan for the Nightcap Oak (Eidothea hardeniana), Department of Environment and Conservation (NSW), Hurstville. ISBN 0 7313 6781 2 Recovery Plan The Nightcap Oak Recovery Plan for the Nightcap Oak (Eidothea hardeniana) Foreword The New South Wales Government established a new environment agency on 24 September 2003, the Department of Environment and Conservation (NSW), which incorporates the New South Wales National Parks and Wildlife Service. Responsibility for the preparation of Recovery Plans now rests with this new department. This document constitutes the New South Wales State and National Recovery Plan for Eidothea hardeniana Weston & Kooyman (Nightcap Oak), and as such considers the conservation requirements of the species across its range. -
Plant Life of Western Australia
INTRODUCTION The characteristic features of the vegetation of Australia I. General Physiography At present the animals and plants of Australia are isolated from the rest of the world, except by way of the Torres Straits to New Guinea and southeast Asia. Even here adverse climatic conditions restrict or make it impossible for migration. Over a long period this isolation has meant that even what was common to the floras of the southern Asiatic Archipelago and Australia has become restricted to small areas. This resulted in an ever increasing divergence. As a consequence, Australia is a true island continent, with its own peculiar flora and fauna. As in southern Africa, Australia is largely an extensive plateau, although at a lower elevation. As in Africa too, the plateau increases gradually in height towards the east, culminating in a high ridge from which the land then drops steeply to a narrow coastal plain crossed by short rivers. On the west coast the plateau is only 00-00 m in height but there is usually an abrupt descent to the narrow coastal region. The plateau drops towards the center, and the major rivers flow into this depression. Fed from the high eastern margin of the plateau, these rivers run through low rainfall areas to the sea. While the tropical northern region is characterized by a wet summer and dry win- ter, the actual amount of rain is determined by additional factors. On the mountainous east coast the rainfall is high, while it diminishes with surprising rapidity towards the interior. Thus in New South Wales, the yearly rainfall at the edge of the plateau and the adjacent coast often reaches over 100 cm. -
Threatened Species of Wilsons and Coopers Creek
Listed below are species recorded from the project areas of Goonengerry Landcare and Wilsons Creek Huonbrook Landcare groups. Additional species are known from adjacent National Parks. E = Endangered V = Vulnerable BCA - Biodiversity Conservation Act 2016 EPBC - Environment Protection and Biodiversity Conservation Act 1999 Threatened Species of Wilsons and Coopers Creek SOS - Saving our Species Scientific name Common name TSC Act status EPBC Act status SOS stream Wilsons Creek and Coopers Creek are tributaries of the Wilsons River on the Far North Coast of New South Wales. Within the South East Queensland Bioregion, the native flora and fauna of PLANTS this region are among the most diverse in Australia. In the catchment areas of the Wilsons and Corokia whiteana Corokia V V Keep watch Coopers Creek 50 threatened species of flora and fauna can be found and 2 endangered Davidsonia johnsonii Smooth Davidson's Plum E E Site managed ecological communities. Desmodium acanthocladum Thorny Pea V V Site managed What is a threatened species? Diploglottis campbellii Small-leaved Tamarind E E Site managed Plants and animals are assessed on the threats that face them and the level to which they are at Doryanthes palmeri Giant Spear Lily V Keep watch risk of extinction. If the risk is high they are listed in legislation and conservation actions are Drynaria rigidula Basket Fern E Partnership developed for their protection. There are almost 1000 animal and plant species at risk of Elaeocarpus williamsianus Hairy Quandong E E Site managed extinction in NSW. Endiandra hayesii Rusty Rose Walnut V V Data deficient A species is considered threatened if: Endiandra muelleri subsp. -
Fossil Fruit of the Macadamieae (Proteaceae) in the Tertiary of Eastern Australia: Eureka Gen
Memoirs of the Queensland Museum | Nature 55(1) © The State of Queensland (Queensland Museum) 2010 PO Box 3300, South Brisbane 4101, Australia Phone 06 7 3840 7555 Fax 06 7 3846 1226 Email [email protected] Website www.qm.qld.gov.au National Library of Australia card number ISSN 0079-8835 NOTE Papers published in this volume and in all previous volumes of the Memoirs of the Queensland Museum may be reproduced for scientific research, individual study or other educational purposes. Properly acknowledged quotations may be made but queries regarding the republication of any papers should be addressed to the Editor in Chief. Copies of the journal can be purchased from the Queensland Museum Shop. A Guide to Authors is displayed at the Queensland Museum web site http://www.qm.qld.gov.au/About+Us/Publications/Memoirs+of+the+Queensland+Museum A Queensland Government Project Typeset at the Queensland Museum Fossil fruit of the Macadamieae (Proteaceae) in the Tertiary of eastern Australia: Eureka gen. nov. Mary E. DETTMANN H. Trevor CLIFFORD Queensland Museum, Geosciences, Hendra Facility, 122 Gerler Rd, Hendra, Qld 4011, Australia. Email: [email protected] Citation: Dettmann, M.E. & Clifford, H.T. 2010 03 15. Fossil fruit of the Macadamieae (Proteaceae) in the Tertiary of eastern Australia: Eureka gen. nov.. Memoirs of the Queensland Museum — Nature 55(1): 147-166. Brisbane. ISSN 0079-8835. Accepted: 13 October 2009. ABSTRACT Eureka gen. nov. is proposed to accommodate fossil fruits recovered from several mid- Tertiary (early Oligocene-Miocene) sites in eastern Australia. The type (E. -
Associations of Societies for Growing Australian Plants
Page 1 Associations of Societies for Growing Australian Plants – Rainforest Study Group – No.62 (7) June 2006 Associations of Societies for Growing Australian Plants ASGAP Rainforest Study Group NEWSLETTER No 62. (7) June 2006 ISSN 0729-5413 Annual Subscription $5, $10 overseas Photos: www.web-a-file.com Study Group Webpage (under construction): http://farrer.csu.edu.au/ASGAP/rainfor.html Email: [email protected] Address: Kris Kupsch, 28 Plumtree Pocket, Burringbar, Australia, 2483. Ph. (02) 66771466 Mob. 0439557438 Introduction ASGAP trip to Sydney Nov 2005 It has been a long while since I wrote a During my brief visit to Sydney in November newsletter, I apologise for taking so long. last year as part of an invitation to speak at a Since the last newsletter the family and I have SGAP meeting in Ermington, I got to do the moved back to the Wet Tropics. I now work following: as an Environmental Scientist undertaking 1. I was escorted by Cas Liber, ASGAP vegetation surveys and compiling Banksia Study Group leader. Cas environmental management plans for parts of toured me through the Botanic the Wet Tropics World Heritage Area. This Gardens, his garden, among others. has been a rather large transition, leaving Many thanks to Cas and his family. behind my garden and all of my immediate 2. I visited Betty Rymers garden at plans in NSW; the job was too good to refuse. Kenthurst. Betty has a notable I wish everyone the best with their rainforest garden including a large endeavours and hope this newsletter was Brachychiton discolor, Dianella worth the wait. -
I Is the Sunda-Sahul Floristic Exchange Ongoing?
Is the Sunda-Sahul floristic exchange ongoing? A study of distributions, functional traits, climate and landscape genomics to investigate the invasion in Australian rainforests By Jia-Yee Samantha Yap Bachelor of Biotechnology Hons. A thesis submitted for the degree of Doctor of Philosophy at The University of Queensland in 2018 Queensland Alliance for Agriculture and Food Innovation i Abstract Australian rainforests are of mixed biogeographical histories, resulting from the collision between Sahul (Australia) and Sunda shelves that led to extensive immigration of rainforest lineages with Sunda ancestry to Australia. Although comprehensive fossil records and molecular phylogenies distinguish between the Sunda and Sahul floristic elements, species distributions, functional traits or landscape dynamics have not been used to distinguish between the two elements in the Australian rainforest flora. The overall aim of this study was to investigate both Sunda and Sahul components in the Australian rainforest flora by (1) exploring their continental-wide distributional patterns and observing how functional characteristics and environmental preferences determine these patterns, (2) investigating continental-wide genomic diversities and distances of multiple species and measuring local species accumulation rates across multiple sites to observe whether past biotic exchange left detectable and consistent patterns in the rainforest flora, (3) coupling genomic data and species distribution models of lineages of known Sunda and Sahul ancestry to examine landscape-level dynamics and habitat preferences to relate to the impact of historical processes. First, the continental distributions of rainforest woody representatives that could be ascribed to Sahul (795 species) and Sunda origins (604 species) and their dispersal and persistence characteristics and key functional characteristics (leaf size, fruit size, wood density and maximum height at maturity) of were compared. -
Ecology of Proteaceae with Special Reference to the Sydney Region
951 Ecology of Proteaceae with special reference to the Sydney region P.J. Myerscough, R.J. Whelan and R.A. Bradstock Myerscough, P.J.1, Whelan, R.J.2, and Bradstock, R.A.3 (1Institute of Wildlife Research, School of Biological Sciences (A08), University of Sydney, NSW 2006; 2Department of Biological Sciences, University of Wollongong, NSW 2522; 3Biodiversity Research and Management Division, NSW National Parks & Wildlife Service, PO Box 1967, Hurstville, NSW 1481) Ecology of Proteaceae with special reference to the Sydney region. Cunninghamia 6(4): 951–1015. In Australia, the Proteaceae are a diverse group of plants. They inhabit a wide range of environments, many of which are low in plant resources. They support a wide range of animals and other organisms, and show distinctive patterns of distribution in relation to soils, climate and geological history. These patterns of distribution, relationships with nutrients and other resources, interactions with animals and other organisms and dynamics of populations in Proteaceae are addressed in this review, particularly for the Sydney region. The Sydney region, with its wide range of environments, offers great opportunities for testing general questions in the ecology of the Proteaceae. For instance, its climate is not mediterranean, unlike the Cape region of South Africa, south- western and southern Australia, where much of the research on plants of Proteaceae growing in infertile habitats has been done. The diversity and abundance of Proteaceae vary in the Sydney region inversely with fertility of habitats. In the region’s rainforest there are few Proteaceae and their populations are sparse, whereas in heaths in the region, Proteaceae are often diverse and may dominate the canopy. -
Ecology and Biogeography in 3D: the Case of the Australian Proteaceae
DOI: 10.1111/jbi.13348 PERSPECTIVE Ecology and biogeography in 3D: The case of the Australian Proteaceae Abstract (Figure 1a). The relative importance of each type of pressure has The key biophysical pressures shaping the ecology and evolution of varied over time and across space (Keeley, Pausas, Rundel, Bond, & species can be broadly aggregated into three dimensions: environ- Bradstock, 2011). For instance, in regions where the climate (e.g. arid mental conditions, disturbance regimes and biotic interactions. The or cold ecosystems) or substrate (e.g. wetlands) is relatively extreme, relative importance of each dimension varies over time and space, environmental factors (temperature, water availability, salinity) are and in most cases multiple dimensions need to be addressed to ade- likely to play a major role in shaping species traits and distributions. quately understand the habitat and functional traits of species at Under intermediate and seasonal climatic conditions (e.g. tropical broad spatial and phylogenetic scales. However, it is currently com- savannas, mediterranean ecosystems), disturbance is likely to play a mon to consider only one or two selective pressures even when major role (Bond, Woodward, & Midgley, 2005; Keeley, Bond, Brad- studying large clades. We illustrate the importance of the all-inclu- stock, Pausas, & Rundel, 2012). In contrast, under benign and largely sive multidimensional approach with reference to the large and ico- aseasonal conditions (e.g. rain forests), species interactions are pre- nic plant family, -
Proteaceae Floral Crops; Cultivar Development and Underexploited Uses
Proteaceae Floral Crops; Cultivar Development and Underexploited Uses Kenneth W. Leonhardt and Richard A. Criley The Proteaceae apparently originated on the southern supercontinent Gondwana long before it divided and began drifting apart during the Mesozoic era, accounting for the presence of the Proteaceae on all of the southern continents (Brits 1984a). The Protea family comprises about 1400 species in over 60 genera, of which over 800 species in 45 genera are from Australia. Africa claims about 400 species, including 330 species in 14 genera from the western Cape. About 90 species occur in Central and South America, 80 on islands east of New Guinea, and 45 in New Caledonia. Madagascar, New Guinea, New Zealand, and South- east Asia host small numbers of species (Rebelo 1995). Proteas are neither herbaceous nor annual, and they are always woody. Their structural habit is vari- able from groundcover forms with creeping stems, and those with underground stems, to vertical to spread- ing shrubs, to tree forms. The leaves are generally large, lignified, hard, and leathery. A mature leaf will generally snap rather than fold when bent. The leaf anatomy is specially adapted for water conservation and drought resistance. These characteristics and the high leaf carbon to nitrogen ratio render the leaves indi- gestible to most insect pests (Rebelo 1995), accounting for the relatively pest-free status of most commer- cial protea plantings. The distribution of the family is linked to the occurrence of soils that are extremely deficient in plant nutrients (Brits 1984a). An accommodating characteristic of the family is the presence of proteoid roots. -
Gevuina Avellana
Phenolic, oxylipin and fatty acid profiles of the Chilean hazelnut (Gevuina avellana): Antioxidant activity and inhibition of pro-inflammatory and metabolic syndrome-associated enzymes Liudis Leidy Pino Ramos, Felipe Jiménez-Aspee, Cristina Theoduloz, Alberto Burgos-Edwards, Raúl Domínguez-Perles, Camille Oger, Thierry Durand, Ángel Gil-Izquierdo, Luis Bustamante, Claudia Mardones, et al. To cite this version: Liudis Leidy Pino Ramos, Felipe Jiménez-Aspee, Cristina Theoduloz, Alberto Burgos-Edwards, Raúl Domínguez-Perles, et al.. Phenolic, oxylipin and fatty acid profiles of the Chilean hazelnut (Gevuina avellana): Antioxidant activity and inhibition of pro-inflammatory and metabolic syndrome-associated enzymes. Food Chemistry, Elsevier, 2019, 298, pp.125026. 10.1016/j.foodchem.2019.125026. hal- 02617123 HAL Id: hal-02617123 https://hal.archives-ouvertes.fr/hal-02617123 Submitted on 3 Jun 2021 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Food Chemistry 298 (2019) 125026 Contents lists available at ScienceDirect Food Chemistry journal homepage: