KUALITAS SILASE JERAMI PADI UNTUK PAKAN TERNAK RUMINANSIA DENGAN PENAMBAHAN Bacillus Circulans

Total Page:16

File Type:pdf, Size:1020Kb

KUALITAS SILASE JERAMI PADI UNTUK PAKAN TERNAK RUMINANSIA DENGAN PENAMBAHAN Bacillus Circulans KUALITAS SILASE JERAMI PADI UNTUK PAKAN TERNAK RUMINANSIA DENGAN PENAMBAHAN Bacillus circulans SANTIKA INDRIYANI PROGRAM STUDI BIOLOGI FAKULTAS SAINS DAN TEKNOLOGI UNIVERSITAS ISLAM NEGERI SYARIF HIDAYATULLAH JAKARTA 2019 M/1441 H KUALITAS SILASE JERAMI PADI UNTUK PAKAN TERNAK RUMINANSIA DENGAN PENAMBAHAN Bacillus circulans SKRIPSI Sebagai Salah Satu Syarat untuk Memperoleh Gelar Sarjana Sains Pada Program Studi Biologi Fakultas Sains dan Teknologi Universitas Islam Negeri Syarif Hidayatullah Jakarta SANTIKA INDRIYANI 11150950000046 PROGRAM STUDI BIOLOGI FAKULTAS SAINS DAN TEKNOLOGI UNIVERSITAS ISLAM NEGERI SYARIF HIDAYATULLAH JAKARTA 2019 M / 1441 H ii ABSTRAK Santika Indriyani. Kualitas Silase Jerami Padi untuk Pakan Ternak Ruminansia dengan Penambahan Bacillus circulans. SKRIPSI. Program Studi Biologi. Fakultas Sains dan Teknologi. Universitas Islam Negeri Syarif Hidayatullah Jakarta. 2019. Dibimbing Oleh Wahidin Teguh Sasongko, M.Sc dan Etyn Yunita M.Si Ketersediaan pakan hijauan terbatas tergantung dengan musim. Jerami padi belum dimanfaatkan secara maksimal untuk pakan ternak ruminansia karena kandungan nutrisinya rendah. Teknologi pakan ternak dengan pembuatan silase dapat mengawetkan sekaligus mempertahankan bahkan dapat meningkatkan kualitas nutrisi bahan pakan. Bacillus circulans berpotensi untuk ditambahkan pada pembuatan silase. Penelitian ini bertujuan untuk mengetahui apakah penambahan B.circulans pada pembuatan silase mampu meningkatkan kualitas fermentatif dan kualitas nutrisi silase jerami padi dan untuk mengetahui pada konsentrasi berapa B.circulans mampu meningkatkan kualitas fermentatif dan kualitas nutrisi silase jerami padi. Penelitian ini menggunakan Rancangan Acak Lengkap (RAL) dengan empat perlakuan penambahan B.circulans (0%, 0,075%, 0,1%, dan 0,125%) dan empat pengulangan. Analisis kualitas fermentatif dan nutrisi dilakukan pada hari ke 21. Hasil silase jerami padi dengan penambahan B.circulans 0,125% memiliki pH lebih rendah dari 0%, namun masih pada kisaran pH basa. Penambahan B.circulans 0,1% memiliki ammonia lebih rendah dari 0% dan kadar glukosa lebih tinggi dari 0%. Silase dengan 0,075%, 0,1%, dan 0,125% B.circulans memiliki nilai bahan kering lebih rendah dari 0%. Penambahan B.circulans konsentrasi 0%, 0,075%, 0,1%, dan 0,125% tidak mempengaruhi nilai total volatile fatty acid, aktivitas enzim selulase, bahan organik, lemak kasar, neutral detergent fiber dan acid detergent fiber. Penambahan B.circulans yang berbeda konsentrasi belum maksimal untuk meningkatkan kualitas fermentatif dan kualitas nutrisi silase jerami padi. Kata kunci: Bacillus circulans, Jerami Padi, Silase vi ABSTRACT Santika Indriyani. Quality of Rice Straw Silage for Ruminant Animal Feed With The Addition of Bacillus circulans. Undergraduated Thesis. Department Of Biology. Faculty of Science and Technology. State Islamic University Syarif Hidayatullah Jakarta. 2019. Supervised by Wahidin Teguh Sasongko, M.Sc and Etyn Yunita M.Sc The availability of forage food is limited depending on the season. Rice straw has not been used maximally for ruminant animal feed because of its low nutrient content. Animal feed technology by making silage can preserve and also maintaining and can even improve the nutritional quality of feed ingredients. Bacillus circulans has the potential to be added to making silage. This study aims to determine whether the addition of B.circulans to silage production can improve the fermentative quality and nutritional quality of rice straw silage and to find out at what concentration B.circulans can improve the fermentative quality and nutritional quality of rice straw silage. This study used a Completely Randomized Design with four treatments adding B.circulans (0%, 0,075%, 0,1%, and 0,125%) and four repetitions. Fermentative and nutritional quality analysis was carried out on Day 21. The results of rice straw silage with the addition of B.circulans 0,125% had a pH lower than 0%, but still in the alkaline pH range. The addition of 0.1% B.circulans has ammonia lower than 0% and glucose levels higher than 0%. Silage with 0,075%, 0,1%, and 0,125% B.circulans has a dry matter value lower than 0%. The addition of B.circulans concentrations 0%, 0,075%, 0,1%, and 0,125% did not affect the total volatile fatty acid value, cellulase enzyme activity, organic matter, ether extract, neutral detergent fiber and acid detergent fiber. The addition of different B.circulans concentrations has not been maximized to improve the fermentative quality and nutritional quality of rice straw silage. Keywords: Bacillus circulans, Rice Straw, Silage vii KATA PENGANTAR Puji dan syukur saya panjatkan kehadirat Allah SWT atas segala limpaham rahmat dan karunia-Nya, sehingga penulis diberikan kemudahan dalam menyusun skripsi ini. Skripsi merupakan tugas akhir yang harus ditempuh sebagai salah satu syarat untuk memperoleh gelar sarjana sains pada Program Studi Biologi, Fakultas Sains dan Teknologi Universitas Islam Negeri Syarif Hidayatullah Jakarta. Skripsi berjudul “Kualitas Silase Jerami Padi untuk Pakan Ternak Ruminansia dengan Penambahan Bacillus circulans”. Penulis menyampaikan rasa terimakasih kepada semua pihak yang telah membimbing dan membantu dalam meyusun skripsi ini, ucapan terimakasih ditujukan kepada: 1. Prof. Dr. Lily Surayya Eka Putri, M.Env. Stud selaku Dekan Fakultas Sains dan Teknologi UIN Syarif Hidayatullah Jakarta yang telah memberikan izin pelaksanaan penelitian. 2. Dr. Priyanti, M.Si selaku Ketua Program Studi Biologi Fakultas Sains dan Teknologi UIN Syarif Hidayatullah Jakarta serta jajarannya yang telah memberikan izin pelaksanaan penelitian. 3. Wahidin Teguh Sasongko M.Sc selaku pembimbing 1 yang telah membimbing serta membantu dalam melaksakan penelitian dan penyusunan skripsi. 4. Etyn Yunita M.Si selaku pembimbing 2 yang telah membantu dalam memberikan nasihat, saran dan bimbingan dalam menyusun skripsi. 5. Dr. Megga Ratnasari Pikoli, M.Si dan Dr. Fahma Wijayanti, M.Si selaku dosen penguji seminar proposal dan seminar hasil yang telah memberikan kritik dan saran dalam penulisan skripsi. 6. Dr. Agus Salim, S.Ag., M.Si dan Dr. Dasumiati, M.Si selaku dosen penguji sidang munaqosyah yang telah memberikan kritik dan saran dalam penulisan skripsi. 7. Pusat Aplikasi Isotop dan Radiasi Badan Tenaga Nuklir Nasional (PAIR- BATAN) Laboratorium Biologi, bidang nutrisi ternak yang telah menyediakan tempat, alat, bahan, dan arahan dalam pelaksanaan penelitian. viii 8. Teguh Wahyono, S.Pt, M.Si, Shintia Nugrahini Wahyu Hardani, A.md, Nana Mulyana,S.ST, Yunida Maharani yang telah membimbing kerja di Laboratorium. 9. Seluruh Dosen Program Studi Biologi yang telah memberikan ilmu pengetahuan dan nasihat kepada penulis. 10. Ayah, Ibu, kakak dan keluarga yang selalu mendoakan, memberi motivasi serta dukungan moril dan materil dalam melaksanakan perkuliahan jenjang S1 hingga menyusun skripsi. 11. Nariswari Fidara, Austina Luthfiyanti dan Nurdia Ekani yang telah membantu dalam melaksanakan penelitian dan memberikan dukungan sehingga penulis dapat menyusun dan menyelesaikan skripsi ini. 12. Kirana Sukma Padmadya yang telah memberikan dukungan semangat, doa, serta motivasi sehingga penulis dapat menyusun dan menyelesaikan skripsi ini. 13. Teman-teman Program Studi Biologi UIN Syarif Hidayatullah Jakarta angkatan 2015 yang telah memberikan banyak dukungan moril. Demikianlah skripsi ini disusun. Penulis berharap agar penulisan skripsi ini dapat bermanfaat bagi pembaca. Penulis menyadari bahwa skripsi ini masih belum sempurna dan masih banyak kekurangan. Tangerang Selatan, November 2019 Penulis ix DAFTAR ISI Halaman ABSTRAK ........................................................................................................ vi KATA PENGANTAR ...................................................................................... viii DAFTAR ISI ..................................................................................................... x DAFTAR GAMBAR ......................................................................................... xi DAFTAR TABEL .............................................................................................. xii DAFTAR LAMPIRAN ..................................................................................... xiii BAB I. PENDAHULUAN ................................................................................. 1 1.1 Latar Belakang .................................................................................... 1 1.2 Rumusan Masalah ............................................................................... 3 1.3 Hipotesis Penelitian ............................................................................ 3 1.4 Tujuan Penelitian ................................................................................ 3 1.5 Manfaat ............................................................................................... 3 1.6 Kerangka Berfikir ............................................................................... 4 BAB II. TINJAUAN PUSTAKA ....................................................................... 5 2.1 Silase ................................................................................................... 5 2.2 Jerami Padi.......................................................................................... 8 2.3 Bacillus circulans ............................................................................... 10 2.4 Zat Aditif Silase .................................................................................. 12 BAB III. METODE PENELITIAN...................................................................
Recommended publications
  • Production of Antimicrobial Agents by Bacillus Spp. Isolated from Al-Khor Coast Soils, Qatar
    Vol. 11(41), pp. 1510-1519, 7 November, 2017 DOI: 10.5897/AJMR2017.8705 Article Number: EA9F76966550 ISSN 1996-0808 African Journal of Microbiology Research Copyright © 2017 Author(s) retain the copyright of this article http://www.academicjournals.org/AJMR Full Length Research Paper Production of antimicrobial agents by Bacillus spp. isolated from Al-Khor coast soils, Qatar Asmaa Missoum* and Roda Al-Thani Microbiology Laboratory, Department of Biological and Environmental Sciences, College of Arts and Sciences, University of Qatar, Doha, Qatar. Received 12 September, 2017; Accepted 6 October, 2017 Bacilli are Gram-positive, sporulating bacteria that can be found in diverse habitats, but mostly in soil. Many recent studies showed the importance of their antimicrobial agents that mainly target other Gram- positive bacteria. This study was conducted to assess the antibacterial activity of Al-Khor coastal soil Bacillus strains against four bacterial strains (Staphylococcus aureus, Staphylococcus epidermis, Escherichia coli, and Pseudomonas aeruginosa) by agar diffusion method as well as investigating best strain antibiotic production in liquid medium. The 25 isolated strains were identified using physical and biochemical tests. Results show that most strains possess significant antibacterial potential against S. aureus and S. epidermis, but however less toward E. coli. Strain 2B-1B optimum activity was achieved using Luria Bertani broth and at 35°C, with pH 9. Therefore, antimicrobial compounds from these strains can be good candidates for future antibiotics production. Further screening for antimicrobial agents should be carried out in search of novel therapeutic compounds. Key words: Al-Khor, zone of inhibition, Bacillus, coastal soil, antimicrobial agent. INTRODUCTION Bacillus bacteria belong to the Firmicutes phylum, the facultative aerobes, some can be anaerobic (Prieto et al., Bacillaceae family, and are Gram-positive bacteria that 2014).
    [Show full text]
  • Bioprospecting of Antibacterial Metabolites in Seaweed Associated Bacterial Flora Along the Southeast Coast of India
    Bioprospecting of antibacterial metabolites in seaweed associated bacterial flora along the southeast coast of India Thesis submitted to COCHIN UNIVERSITY OF SCIENCE AND TECHNOLOGY In partial fulfillment of the requirements for the degree of DOCTOR OF PHILOSOPHY in MARINE SCIENCES By BINI THILAKAN (Reg. No.3782) CENTRAL MARINE FISHERIES RESEARCH INSTITUTE (Indian council of Agricultural Research) Post Box No. 1603, Cochin-682018, INDIA October 2015 I do hereby declare that the thesis entitled “Bioprospecting of antibacterial metabolites in seaweed associated bacterial flora along the southeast coast of India” is the authentic and bonafide record of the research work carried out by me under the guidance of Dr. Kajal Chakraborty, Senior Scientist, Central Marine Fisheries Research Institute, Cochin, in partial fulfilment for the award of Ph.D. degree under the Faculty of Marine Sciences of Cochin University of Science and Technology, Cochin and no part thereof has been previously formed the basis for the award of any degree, diploma, associate ship, fellowship or other similar titles or recognition. Place: Cochin Date: 16/10/2015 BINI THILAKAN Dedicated to my family On this occasion of completing my doctoral degree dissertation, I realize that this work was not completed in a vacuum. I am thankful to many people who have helped me through the completion of this dissertation. Without thanking them my work will be incomplete. The first and foremost I wish to thank my supervisor, Dr.Kajal Chakraborty, Senior Scientist, Marine Biotechnology Division, CMFRI. who has been supportive since the days i joined CMFRI as a project assistant. He helped me come up with the thesis topic and guided me through the rough road to finish this thesis.
    [Show full text]
  • 41653410006.Pdf
    Acta Universitaria ISSN: 0188-6266 [email protected] Universidad de Guanajuato México Morales-Barrón, Bruce Manuel; Vázquez-González, Francisco J.; González-Fernández, Raquel; De La Mora-Covarrubias, Antonio; Quiñonez-Martínez, Miroslava; Díaz-Sánchez, Ángel Gabriel; Martínez-Martínez, Alejandro; Nevárez-Moorillón, Virginia; Valero-Galván, José Evaluación de la capacidad antagónica de cepas del orden bacillales aisladas de lixiviados de lombricomposta sobre hongos fitopatógenos Acta Universitaria, vol. 27, núm. 5, septiembre-octubre, 2017, pp. 44-54 Universidad de Guanajuato Guanajuato, México Disponible en: http://www.redalyc.org/articulo.oa?id=41653410006 Cómo citar el artículo Número completo Sistema de Información Científica Más información del artículo Red de Revistas Científicas de América Latina, el Caribe, España y Portugal Página de la revista en redalyc.org Proyecto académico sin fines de lucro, desarrollado bajo la iniciativa de acceso abierto ISSN 0188-6266 doi: 10.15174/au.2017.1313 Evaluación de la capacidad antagónica de cepas del orden bacillales aisladas de lixiviados de lombricomposta sobre hongos fitopatógenos Evaluation of antagonist capacity of bacillales strains isolated from vermicompost leachate on phytopatogenic fungi Bruce Manuel Morales-Barrón*, Francisco J. Vázquez-González*, Raquel González-Fernández*, Antonio De La Mora-Covarrubias*, Miroslava Quiñonez-Martínez*, Ángel Gabriel Díaz-Sánchez*, Alejandro Martínez-Martínez*, Virginia Nevárez-Moorillón**, José Valero-Galván*◊ RESUMEN El orden Bacillales se ha descrito como antagónico de fitopatógenos, además se ha mencionado en varios estudios algunas especies de este orden se encuentra en lixiviados de lombricomposta. En el presente estudio se evaluó el efecto antagónico de cinco cepas del orden Bacillales aisladas de lixiviados de lombricomposta sobre el crecimiento micelial de Phytophthora capsici, Fusarium oxysporum, Alternaria solani, y Rhizopus sp.
    [Show full text]
  • Blighia Sapida Bark and Its Inhibition of Cholinergic Enzymes Linked to Alzheimer’S Disease 257 – 264 Oluwafemi A
    ��ﺍﻟﻤﺠﻠﺔ ﺍﻷﺭﺩﻧﻴﺔ ﻟﻠﻌﻠﻮﻡ ﺍﻟﺤﻴﺎﺗﻴﺔ�� Jordan Journal of Biological Sciences (JJBS) http://jjbs.hu.edu.jo Jordan Journal of Biological Sciences (JJBS) (ISSN: 1995–6673 (Print); 2307-7166 (Online)): An International Peer- Reviewed Open Access Research Journal financed by the Scientific Research Support Fund, Ministry of Higher Education and Scientific Research, Jordan and published quarterly by the Deanship of Research and Graduate Studies, The Hashemite University, Jordan. Editor-in-Chief Professor Abu-Elteen, Khaled H. Medical Mycology ,The Hashemite University Editorial Board (Arranged alphabetically) Professor Abdalla, Shtaywy S Professor Lahham, Jamil N. Human Physiology, Plant Taxonomy, Tafila Technical University Yarmou k University Professor Al-Hadidi, Hakam F. Professor . Sallal, Abdul-Karim J. Toxicology and Clinical Pharmacology Applied Microbiology, Jordan University of Science and Technology Jordan University of Science and Technology Professor Bashir, Nabil A. Professor Tarawneh, Khaled A. Biochemistry and Molecular Genetics Molecular Microbiology, Mutah University Jordan University of Science and Technology Professor Khyami-Horani, Hala Microbial ,Biotechnology, The University of Jordan Submission Address Editorial Board Support Team Professor Abu-Elteen, Khaled H Language Editor Publishing Layout The Hashemite University Dr. Qusai Al-Debyan Eng.Mohannad Oqdeh P.O. Box 330127, Zarqa, 13115, Jordan Phone: +962-5-3903333 ext. 5157 E-Mail: [email protected] ��ﺍﻟﻤﺠﻠﺔ ﺍﻷﺭﺩﻧﻴﺔ ﻟﻠﻌﻠﻮﻡ ﺍﻟﺤﻴﺎﺗﻴﺔ�� Jordan Journal of Biological Sciences (JJBS) http://jjbs.hu.edu.jo International Advisory Board Prof. Abdel-Hafez, Sami K. Prof. Abdul-Haque, Allah Hafiz Yarmouk University, Jordan National Institute for Biotechnology and Genetic Engineering, Pakistan Prof. Abuharfeil, Nizar M Prof. Al-Najjar, Tariq Hasan Ahmad Jordan University of science and Technology, Jordan The University of Jordan, Jordan Prof.
    [Show full text]
  • Usefulness of Japanese-Radish Residue in Biological Soil
    Crop Protection 61 (2014) 64e73 Contents lists available at ScienceDirect Crop Protection journal homepage: www.elsevier.com/locate/cropro Usefulness of Japanese-radish residue in biological soil disinfestation to suppress spinach wilt disease accompanying with proliferation of soil bacteria in the Firmicutes Subrata Mowlick a, Takashi Inoue b, Toshiaki Takehara c, Akio Tonouchi d, Nobuo Kaku a, Katsuji Ueki a, Atsuko Ueki a,* a Faculty of Agriculture, Yamagata University, 1-23, Wakaba-machi, Tsuruoka, Yamagata 997-8555, Japan b Yamaguchi Prefectural Technology Center for Agriculture and Forestry, Yamaguchi 753-0214, Japan c NARO Western Region Agricultural Research Center, Hiroshima 721-8514, Japan d Faculty of Agriculture and Life Science, Hirosaki University, Aomori 036-8561, Japan article info abstract Article history: Biological soil disinfestation (BSD) is an effective method to suppress soilborne plant diseases by Received 12 November 2013 incorporation of plant biomass into soil under reduced, anoxic condition. Usefulness of Japanese-radish Received in revised form (daikon) residue as plant biomass for BSD was investigated by both model and field experiments in 5 March 2014 comparison with the effects of Brassica juncea plants or wheat bran. Considerable amounts of acetate Accepted 14 March 2014 together with minor amounts of propionate and butyrate were detected from the radish-treated soils at similar levels with those in soils treated with B. juncea plants or wheat bran. BSD treatments with radish Keywords: residue reduced spinach wilt disease incidence in both model and field experiments. When the BSD- Anaerobic bacteria Biological soil disinfestation (BSD) treated soil was treated again with irrigation and covering without biomass before next cropping, Japanese radish (daikon) however, wilt disease was hardly suppressed.
    [Show full text]
  • Aerobic Mesophilic Sporeforming Bacteria
    — 1 %—+ ™ AEROBIC MESOPHILIC SPOREFORMING BACTERIA \> ««• Miscellaneous Publication No. 559 \l U. S. DEPARTMENT OF AGRICULTURE . UNITED STATES DEPARTMENT OF AGRICULTURE MISCELLANEOUS PUBLICATION No. 559 Washington, D. C. May 1946 AEROBIC MESOPHILIC SPOREFORMING BACTERIA By Nathan R. Smith, senior bacteriologist, Ruth E. Gordon, formerly assistant soil bacteriologist, and Francis E. Clark, i bacteriologist, Division of Soils, Fertilizers, and Irrigation, Bureau of Plant Industry, Soils, and Agricultural Engineering, Agricultural Research Administration 2 CONTENTS Page Page Summary 2 Descriptions of species studied—Con. Need for classification 3 Group 1—Continued. Studies on dissociation 6 Bacillus megatherium-Bacillus Dissociation of Bacillus mycoides. 6 cere us intermediates Historical background 6 Bacillus cereus Dissociants obtained 7 Bacillus cereus var. mycoides. Vitamin requirements 7 Bacillus cereus var. anthracis Examination of dissociants . 8 Bacillus subtilis Lysis of dissociants by bac- Bacillus subtilis vox. aterrimus teriophage 9 Bacillus subtilis var. niger. Stability of the dissociants. 9 Bacillus subtilis-Bacillus pum- Dissociation of Bacillus praiissnitzii 9 ilus intermediates Dissociation of Bacillus aterrimus. 9 Bacillus pumilus 67 Dissociation of Bacillus nigcr 11 Bacillus coagulans 73 Factors affecting the production of Bacillus firm us 75 acetylmethylcarbinol 12 Bacillus lentus 77 Use of the Voges-Proskauer test. 12 Group 2. Sporangia definitely Steaming the medium 13 swollen by oval spores 78 Length and temperature of incu- Bacillus polymyxa 78 bation 15 Bacillus macerans 79 Kind of peptone 16 Bacillus circulans 81 Reaction of medium 17 Bacillus macerans-Bacillus cir- Aeration 17 culans intermediates 86 Test reagents for acetoin 18 Bacillus alvei 87 Conclusions on production of acetyl- Bacillus laterosporus 88 methylcarbinol 18 Bacillus brevis 90 Storage of fat 19 Group 3.
    [Show full text]
  • Bacillus Massiliogorillae Sp. Nov
    Standards in Genomic Sciences (2013) 9:93-105 DOI:10.4056/sigs.4388124 Non-contiguous finished genome sequence and description of Bacillus massiliogorillae sp. nov. Mamadou Bhoye Keita1, Seydina M. Diene1, Catherine Robert1, Didier Raoult1,2, Pierre- Edouard Fournier1, and Fadi Bittar1* 1URMITE, Aix-Marseille Université, Faculté de Médecine, Marseille, France 2King Fahad Medical Research Center, King Abdul Aziz University, Jeddah, Saudi Arabia *Correspondence: Fadi Bittar ([email protected]) Keywords: Bacillus massiliogorillae, genome, culturomics, taxonogenomics Strain G2T sp. nov. is the type strain of B. massiliogorillae, a proposed new species within the genus Bacillus. This strain, whose genome is described here, was isolated in France from the fecal sample of a wild western lowland gorilla from Cameroon. B. massiliogorillae is a facul- tative anaerobic, Gram-variable, rod-shaped bacterium. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 5,431,633 bp long genome (1 chromosome but no plasmid) contains 5,179 protein-coding and 98 RNA genes, including 91 tRNA genes. Introduction Strain G2T (= CSUR P206 = DSM 26159) is the type Here we present a summary classification and a strain of B. massiliogorillae sp. nov. This bacterium set of features for B. massiliogorillae sp. nov. strain is a Gram-variable, facultatively anaerobic, indole- G2T together with the description of the complete negative bacillus having rounded-ends. It was iso- genome sequence and annotation. These charac- lated from the stool sample of Gorilla gorilla goril- teristics support the circumscription of the spe- la as part of a “culturomics” study aiming at culti- cies B.
    [Show full text]
  • Antimicrobial Effects of Potential Probiotics of Bacillus Spp. Isolated from Human Microbiota: in Vitro and in Silico Methods
    microorganisms Article Antimicrobial Effects of Potential Probiotics of Bacillus spp. Isolated from Human Microbiota: In Vitro and In Silico Methods Alfonso Torres-Sánchez 1,2,† , Jesús Pardo-Cacho 1,† , Ana López-Moreno 1,2,3,* , Ángel Ruiz-Moreno 1,2 , Klara Cerk 1 and Margarita Aguilera 1,2,3,* 1 Department of Microbiology, Faculty of Pharmacy, University of Granada, Campus of Cartuja, 18071 Granada, Spain; [email protected] (A.T.-S.); [email protected] (J.P.-C.); [email protected] (Á.R.-M.); [email protected] (K.C.) 2 Institute of Nutrition and Food Technology “José Mataix”, CIBM, University of Granada, 18016 Granada, Spain 3 Instituto de Investigación Biosanitaria ibs (IBS), 18012 Granada, Spain * Correspondence: [email protected] (A.L.-M.); [email protected] (M.A.); Tel.:+34-9-5824-5129 (A.L.-M.); Fax: +34-958-246235 (M.A.) † These authors have contributed equally to this manuscript. Abstract: The variable taxa components of human gut microbiota seem to have an enormous biotech- nological potential that is not yet well explored. To investigate the usefulness and applications of its biocompounds and/or bioactive substances would have a dual impact, allowing us to better understand the ecology of these microbiota consortia and to obtain resources for extended uses. Our research team has obtained a catalogue of isolated and typified strains from microbiota showing Citation: Torres-Sánchez, A.; resistance to dietary contaminants and obesogens. Special attention was paid to cultivable Bacillus Pardo-Cacho, J.; López-Moreno, A.; species as potential next-generation probiotics (NGP) together with their antimicrobial production Ruiz-Moreno, Á.; Cerk, K.; Aguilera, and ecological impacts.
    [Show full text]
  • Analysis of Bacteria Associated with Honeys of Different Geographical
    RESEARCH ARTICLE Analysis of bacteria associated with honeys of different geographical and botanical origin using two different identification approaches: MALDI-TOF MS and 16S rDNA PCR technique 1 1 1,2 1,2 Paweø PomastowskiID *, Michaø ZøochID , Agnieszka Rodzik , Magda Ligor , Markus Kostrzewa3, Bogusøaw Buszewski1,2 a1111111111 1 Interdisciplinary Center for Modern Technologies, Nicolaus Copernicus University in Torun, Torun, Poland, 2 Department of Environmental Chemistry and Bioanalytics, Faculty of Chemistry, Nicolaus Copernicus a1111111111 University in Torun, Torun, Poland, 3 Bruker Daltonik GmbH, Bremen, Germany a1111111111 a1111111111 * [email protected] a1111111111 Abstract In the presented work identification of microorganisms isolated from various types of honeys OPEN ACCESS was performed. Martix-assisted laser desorption/ionization time-of-flight mass spectrometry Citation: Pomastowski P, Zøoch M, Rodzik A, Ligor (MALDI-TOF MS) and 16S rDNA sequencing were applied to study environmental bacteria M, Kostrzewa M, Buszewski B (2019) Analysis of bacteria associated with honeys of different strains.With both approches, problematic spore-forming Bacillus spp, but also Staphylococ- geographical and botanical origin using two cus spp., Lysinibacillus spp., Micrococcus spp. and Brevibacillus spp were identified. How- different identification approaches: MALDI-TOF MS ever, application of spectrometric technique allows for an unambiguous distinction between and 16S rDNA PCR technique. PLoS ONE 14(5): species/species groups e.g.B. subtilis or B. cereus groups. MALDI TOF MS and 16S rDNA e0217078. https://doi.org/10.1371/journal. pone.0217078 sequencing allow for construction of phyloproteomic and phylogenetic trees of identified bacterial species. Furthermore, the correlation beetween physicochemical properties, geo- Editor: Doralyn S. Dalisay, University of San Agustin, PHILIPPINES graphical and botanical origin and the presence bacterial species in honey samples were investigated.
    [Show full text]
  • Characterisation of New Bacillus Circulans Strain Isolated from Oil Shale
    V. DRAGUTINOVI] et al.: New Bacillus circulans Strain from Oil Shale, Food Technol. Biotechnol. 50 (1) 123–127 (2012) 123 ISSN 1330-9862 scientific note (FTB-2480) Characterisation of New Bacillus circulans Strain Isolated from Oil Shale Vesna Dragutinovi}1*, Miroslav M. Vrvi}2,3, Izabela Swiecicka4, Olga Cvetkovi}3, Tanja Beri}5 and Slavi{a Stankovi}5 1Institute of Medical Chemistry, Faculty of Medicine, University of Belgrade, Vi{egradska 26, RS-1000 Belgrade, Serbia 2Faculty of Chemistry, University of Belgrade, Studentski trg 16, RS-11000 Belgrade, Serbia 3Institute of Chemistry, Technology and Metallurgy, Center of Chemistry, University of Belgrade, Njego{eva 12, RS-11000 Belgrade, Serbia 4Department of Microbiology, Institute of Biology, University of Bialystok, PL-15-950 Bialystok, Poland 5Faculty of Biology, University of Belgrade, Studentski trg 16, RS-11000 Belgrade, Serbia Received: March 18, 2010 Accepted: January 18, 2011 Summary A new strain of Bacillus sp. was obtained during experiments of oil shale deminerali- zation, which were carried out in order to get ’pure’ organic matter (kerogen). The demi- neralization efficiency of newly isolated strain was found to be substantially higher in comparison with that of Bacillus circulans Jordan 1890. On the basis of the biochemical characteristics, protein patterns and fatty acid composition, as well as the whole genome profile and 16S rDNA sequencing, the new strain was identified as Bacillus circulans VD01. Key words: Bacillus circulans, oil shale, kerogen, siliceous bacteria B. circulans is a typical chemoorganoheterotrophic bac- Introduction terium using mono-, di- and polysaccharides and poly- hydroxylic alcohols as sources of carbon, energy and elec- Kerogen is a mixture of organic compounds.
    [Show full text]
  • Taxonomic Index of Bees*
    Appendix A Taxonomic Index of Bees* *The names of species (or subspecies) were organized by the speci fi c (or subspeci fi c) epithet (e.g., Apis mellifera must be searched as mellifera , Apis and Apis mellifera scutellata as scutellata , Apis mellifera ). Species referred as sp. or spp. are indicated only by the generic name (e.g., Anthophora sp. appears only as Anthophora ). Also, species named approximately to another one, mentioned as af fi nis , near, sp. gr., etc., can be found in the name of the af fi ned species (e.g., Scaptotrigona aff . depilis appears as depili s, Scaptotrigona ). Names in bold are junior synonyms (senior syn- onyms are indicated in brackets). acapulconis (Strand, 1919), Geotrigona , 101, 140, 395 acapulconis Strand, 1919, Trigona , 557 ailyae Camargo, 1980, Partamona , 78 alfkeni Friese, 1900, Trigona , 75 Alphaneura Gray, 1832 (= Trigona ), 7 amalthea (Olivier, 1789), Trigona , 79, 94, 103 Amalthea Ra fi nesque, 1815 (= Trigona ), 7 amazonensis (Ducke, 1916), Trigona , 80 Andrena Fabricius, 1775, 3 anduzei (Schwarz, 1943), Paratrigona , 78, 81 angustula (Latreille, 1811), Tetragonisca , 91, 102, 117, 141, 298, 375, 395 angustula (Latreille, 1811), Tetragonisca angustula , 91, 102, 117, 141, 274, 298, 375, 395 angustula Latreille, 1811, Trigona (Frieseomelitta) angustula , 557 angustula Latreille, 1811, Trigona ( Tetragonisca ), 79 angustula Latreille, 1811, Trigona ( Tetragonisca ) angustula, xiv, 11, 79, anthidioides Lepeletier, 1836, Melipona quadrifasciata , 412, 530, 531, 543 Anthophora Latreille, 1803, 175
    [Show full text]
  • Final Screening Assessment for Bacillus Circulans Strain ATCC 9500
    Final Screening Assessment for Bacillus circulans strain ATCC 9500 Environment and Climate Change Canada Health Canada February 2018 Synopsis Pursuant to paragraph 74(b) of the Canadian Environmental Protection Act, 1999 (CEPA), the Minister of the Environment and the Minister of Health have conducted a screening assessment on Bacillus circulans strain ATCC 9500. B. circulans strain ATCC 9500 is a bacterium that has characteristics in common with other strains of the species B. circulans. B. circulans is an endospore-forming bacterium that is present in many environments. It has been isolated from soils and marine water, and is found in association with plants and animals. B. circulans has properties that make it of potential use in aquaculture, bioremediation, biodegradation, water and wastewater treatment, drain cleaning and degreasing and enzyme production. There has been no adverse effect attributed to B. circulans strain ATCC 9500 in the environment. However, in the context of experimental investigations into their biocontrol potential, some strains of B. circulans have shown pathogenic potential towards some insects and nematodes when directly inoculated with high concentrations. Nonetheless, B. circulans species is not considered a plant or animal pathogen, and in spite of its widespread distribution in the environment, there is no evidence that B. circulans has adversely affected terrestrial invertebrates at the population level. There have been no human infections attributed to B. circulans strain ATCC 9500, and as a species, B. circulans is not known as a human pathogen. Despite its ubiquity, there has been few case reports of human infection with B. circulans, and these occurred mostly in individuals with pre-existing health conditions.
    [Show full text]