Differentiating Iconella from Surirella (Bacillariophyceae): Typifying Four Ehrenberg Names and a Preliminary Checklist of the African Taxa
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Protocols for Monitoring Harmful Algal Blooms for Sustainable Aquaculture and Coastal Fisheries in Chile (Supplement Data)
Protocols for monitoring Harmful Algal Blooms for sustainable aquaculture and coastal fisheries in Chile (Supplement data) Provided by Kyoko Yarimizu, et al. Table S1. Phytoplankton Naming Dictionary: This dictionary was constructed from the species observed in Chilean coast water in the past combined with the IOC list. Each name was verified with the list provided by IFOP and online dictionaries, AlgaeBase (https://www.algaebase.org/) and WoRMS (http://www.marinespecies.org/). The list is subjected to be updated. Phylum Class Order Family Genus Species Ochrophyta Bacillariophyceae Achnanthales Achnanthaceae Achnanthes Achnanthes longipes Bacillariophyta Coscinodiscophyceae Coscinodiscales Heliopeltaceae Actinoptychus Actinoptychus spp. Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Akashiwo Akashiwo sanguinea Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Amphidinium Amphidinium spp. Ochrophyta Bacillariophyceae Naviculales Amphipleuraceae Amphiprora Amphiprora spp. Bacillariophyta Bacillariophyceae Thalassiophysales Catenulaceae Amphora Amphora spp. Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Anabaenopsis Anabaenopsis milleri Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema Anagnostidinema amphibium Anagnostidinema Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema lemmermannii Cyanobacteria Cyanophyceae Oscillatoriales Microcoleaceae Annamia Annamia toxica Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Aphanizomenon Aphanizomenon flos-aquae -
Proceedings of the 1St Central-European Diatom Meeting
Proceedings of the 1st Central European Diatom Meeting 2007 Kusber, W.-H. & Jahn, R. (ed.) Botanic Garden and Botanical Museum Berlin-Dahlem, Freie Universität Berlin ISBN 978-3-921800-63-8, © BGBM, Berlin 2007. doi:10.3372/cediatom.105 (available via http://dx.doi.org/) Digitizing African Surirellaceae: a pilot study Christine Cocquyt1, Jonathan Taylor2, Wolf-Henning Kusber3, Colin Archibald4, William 5 3 Harding & Regine Jahn 1National Botanic Garden of Belgium, Domein van Bouchout, 1860 Meise, Belgium; [email protected] 2North West University, Potchefstroom, South Africa; [email protected] 3Botanic Garden and Botanical Museum Berlin-Dahlem, Freie Universität Berlin, Königin-Luise-Str. 6-8, 14195 Berlin, Germany; [email protected]; [email protected] 4KZN Aquatic Ecosystems, Durban, South Africa; [email protected] 5BDH Environmental Consulting, Helderberg, South Africa; [email protected] INTRODUCTION The investigation of African inland diatoms already started in the 19th century. Scientists such as C.G. Ehrenberg (1795–1876), O. Müller (1837–1917), G.S. West (1876–1919), F. Hustedt (1886–1968), B.J. Cholnoky (1899–1972), N. Woodhead (1903–1978), R.D. Tweed (1900–1989), N. Foged (1906–1988), and P. Compère (1934–) described new taxa and depicted their findings by line drawings (many published in Schmidt 1874-1959). Since the 1990’s, publications dealing with African micro-algae have started publishing LM and SEM microphotographs (e.g. Compère 1995, Caljon & Cocquyt 1992, Cocquyt 1999a, b, 2003, 2004, Cocquyt & Vyverman 1994). African diatom taxa have often been regarded as varieties or formas of European species or have been sunk into synonymy. -
Ordem Surirellales (Bacillariophyceae) No Estado De São Paulo: Levantamento Florístico
Krysna Stephanny de Morais Ferreira Ordem Surirellales (Bacillariophyceae) no Estado de São Paulo: levantamento florístico Dissertação apresentada ao Instituto de Botânica da Secretaria do Meio Ambiente do Estado de São Paulo como parte dos requisitos para obtenção do título de MESTRE em BIODIVERSIDADE VEGETAL E MEIO AMBIENTE, Área de Concentração Plantas Avasculares em Análises Ambientais. SÃO PAULO 2016 Krysna Stephanny de Morais Ferreira Ordem Surirellales (Bacillariophyceae) no Estado de São Paulo: levantamento florístico Dissertação apresentada ao Instituto de Botânica da Secretaria do Meio Ambiente do Estado de São Paulo como parte dos requisitos para obtenção do título de MESTRE em BIODIVERSIDADE VEGETAL E MEIO AMBIENTE, Área de Concentração Plantas Avasculares em Análises Ambientais. ORIENTADOR: PROF. DR. CARLOS EDUARDO DE MATTOS BICUDO i ii À minha mãe Aurilene e ao meu pai Edilson, família e amigos, dedico. iii Tudo que é seu encontrará uma maneira de chegar até você. (Chico Xavier) iv AGRADECIMENTOS Em primeiro lugar gostaria de agradecer a Deus por ser minha base e nunca ter me abandonado nos momentos difíceis. Ao meu queridíssimo Prof. Dr. Carlos Eduardo de Mattos Bicudo pela confiança, incentivo e apoio. Obrigada, de coração, por tudo que me foi passado, pelos conhecimentos científicos e pelas agradáveis conversas e conselhos. Obrigada por fazer mais leve essa caminhada e pelas palavras certas nos momentos de “aperreio”. Obrigada mesmo, de verdade. À Profª Drª Denise de Campos Bicudo pelo conhecimento a mim passado, pelos conselhos e por ser essa pessoa simpática, amável e gentil que sempre nos recebe de braços abertos. À Profª Drª Carla Ferragut por todo conhecimento e experiência a nós passada em laboratório, nas aulas e no dia-a-dia. -
Protistology Diatom Assemblages of the Brackish Bolshaya Samoroda
Protistology 13 (4), 215–235 (2019) Protistology Diatom assemblages of the brackish Bolshaya Samoroda River (Russia) studied via light micro- scopy and DNA metabarcoding Elena A. Selivanova, Marina E. Ignatenko, Tatyana N. Yatsenko-Stepanova and Andrey O. Plotnikov Institute for Cellular and Intracellular Symbiosis of the Ural Branch of the Russian Academy of Sciences, Orenburg 460000, Russia | Submitted October 15, 2019 | Accepted December 10, 2019 | Summary Diatoms are highly diverse and widely spread aquatic photosynthetic protists. Studies of regional patterns of diatom diversity are substantial for understanding taxonomy and biogeography of diatoms, as well as for ecological perspectives and applied purposes. DNA barcoding is a modern approach, which can resolve many problems of diatoms identification and can provide valuable information about their diversity in different ecosystems. However, only few studies focused on diatom assemblages of brackish rivers and none of them applied the genetic tools. Herein, we analyzed taxonomic composition and abundance of diatom assemblages in the brackish mixohaline Bolshaya Samoroda River flowing into the Elton Lake (Volgograd region, Russia) using light microscopy and high-throughput sequencing of the V4 region of the 18S rDNA gene amplicons. In total, light microscopy of the samples taken in 2011–2014 and 2018 allowed to distinguish 39 diatom genera, represented by 76 species and infraspecies taxa. Twenty three species of diatoms were recorded in the river for the first time. Next-generation sequencing revealed a larger number of diatom taxa (26 genera and 47 OTUs in two samples vs. 20 genera and 37 species estimated by light microscopy). As a result, sequences of Haslea, Fistulifera, Gedaniella were recorded in the river for the first time. -
Marine Phytoplankton Atlas of Kuwait's Waters
Marine Phytoplankton Atlas of Kuwait’s Waters Marine Phytoplankton Atlas Marine Phytoplankton Atlas of Kuwait’s Waters Marine Phytoplankton Atlas of Kuwait’s of Kuwait’s Waters Manal Al-Kandari Dr. Faiza Y. Al-Yamani Kholood Al-Rifaie ISBN: 99906-41-24-2 Kuwait Institute for Scientific Research P.O.Box 24885, Safat - 13109, Kuwait Tel: (965) 24989000 – Fax: (965) 24989399 www.kisr.edu.kw Marine Phytoplankton Atlas of Kuwait’s Waters Published in Kuwait in 2009 by Kuwait Institute for Scientific Research, P.O.Box 24885, 13109 Safat, Kuwait Copyright © Kuwait Institute for Scientific Research, 2009 All rights reserved. ISBN 99906-41-24-2 Design by Melad M. Helani Printed and bound by Lucky Printing Press, Kuwait No part of this work may be reproduced or utilized in any form or by any means electronic or manual, including photocopying, or by any information or retrieval system, without the prior written permission of the Kuwait Institute for Scientific Research. 2 Kuwait Institute for Scientific Research - Marine phytoplankton Atlas Kuwait Institute for Scientific Research Marine Phytoplankton Atlas of Kuwait’s Waters Manal Al-Kandari Dr. Faiza Y. Al-Yamani Kholood Al-Rifaie Kuwait Institute for Scientific Research Kuwait Kuwait Institute for Scientific Research - Marine phytoplankton Atlas 3 TABLE OF CONTENTS CHAPTER 1: MARINE PHYTOPLANKTON METHODOLOGY AND GENERAL RESULTS INTRODUCTION 16 MATERIAL AND METHODS 18 Phytoplankton Collection and Preservation Methods 18 Sample Analysis 18 Light Microscope (LM) Observations 18 Diatoms Slide Preparation -
Surirella Wulingensis Sp. Nov. and Fine Structure of S. Tientsinensis Skvortzov (Bacillariophyceae) from China
Fottea, Olomouc, 19(2): 151–162, 2019 151 DOI: 10.5507/fot.2019.006 Surirella wulingensis sp. nov. and fine structure of S. tientsinensis Skvortzov (Bacillariophyceae) from China Bing Liu1*, Saúl Blanco2,3, Luc Ector4, Zhu–xiang Liu1 & Juan Ai1 1College of Biology and Environmental Science, Jishou University, Jishou 416000, China; *Corresponding author e–mail: [email protected] 2Departamento de Biodiversidad y Gestión Ambiental, Facultad de Ciencias Biológicas y Ambientales, Universidad de León, Campus de Vegazana s/n, 24071, León, España 3Laboratorio de diatomología y calidad de aguas, Instituto de Investigación de Medio Ambiente, Recursos Naturales y Biodiversidad, La Serna 58, 24007, León, España 4Luxembourg Institute of Science and Technology (LIST), Department of Environmental Research and Innovation, 41 rue du Brill, L–4422 Belvaux, Luxembourg Abstract: Two Surirella species from China are studied using light and scanning electron microscopy. Surirella wulingensis sp. nov., discovered from Li River (located in Wuling Mountains, China), bears five undulations from pole to pole throughout the whole valve diminution series and parallel valve margins, which differ from other similar taxa. Based on the observations of the fine structure, an amended description is provided for S. tientsinensis which possesses a unique character within the genus Surirella: rounded and rimmed outer openings of areolae. Three new morphological terms are proposed: costa–stria bundle (CSB), over–fibula costa (OFC), and mantle sinking against a fibula (MSAF), which can be used for describing someSurirella taxa more succinctly and explicitly including these taxa in this study. Key words: corresponding relationship, diatom, fine structure, new species, rimmed opening Introduction Surirella sensu stricto, they are still a distinctive group with unique valve surface undulations from pole to Surirella Turpin is a diversified diatom genus that in- pole. -
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Cryptogamie, Algologie, 2018, 39 (1): 35-62 © 2018 Adac. Tous droits réservés Epithemia hirudiniformis and related taxa within the subgenus Rhopalodiella subg. nov.in comparison to Epithemia subg. Rhopalodia stat nov. (Bacillariophyceae) from East Africa Christine CoCQUYt a* Wolf-Henning kUSBer b ®ine JAHn b aBotanic Garden meise, Nieuwelaan 38, BE-1860 meise, Belgium bBotanischerGarten und BotanischesMuseum Berlin, Freie UniversitätBerlin, königin-luise-Str.6-8, D-14195 Berlin, Germany Abstract – epithemia hirudiniformis and three morphologically related taxa, described in rhopalodia by O. Müller from material collected in East Africa at the end of the 19th and the beginning of the 20th century were re-evaluated and lectotypes designated. rhopalodiella as anew subgenus is proposed which refines O. Müller’s infrageneric classification and to which all these taxa belong. In addition, the type of epithemiarhopala,described by Ehrenbergfrom Egypt, was studied to examine the assumed synonymy,introduced by Hustedt, with some of Müller’s species. This study,using light and scanning electron microscopy,was not only based on historic material but also more recent material from Africa, including samples from the Island of Reunion from which the new species epithemia vandevijveri is described. The distribution of epithemia subg. rhopalodiella,known to be restricted to tropical Africa, is discussed based on literature data and own observations. Corresponding to recent molecular-based studies, rhopalodia is given anew status as subgenus. Classification /diatoms /East Africa /new species /new subgenera / Rhopalodia / taxonomy /typification INTRODUCTION rhopalodia O. Müll. taxa are, like the representatives of the genus Iconella Jurily,formerly subsumed under the genus name Surirella Turpin (Ross, 1983; Jahn et al.,2017), typical components of the East African Rift diatom flora. -
Phytoplankton in a Tropical Estuary, Northeast Brazil: Composition and Life Forms
11 3 1633 the journal of biodiversity data April 2015 Check List NOTES ON GEOGRAPHIC DISTRIBUTION Check List 11(3): 1633, April 2015 doi: http://dx.doi.org/10.15560/11.3.1633 ISSN 1809-127X © 2015 Check List and Authors Phytoplankton in a tropical estuary, Northeast Brazil: composition and life forms Eveline P. Aquino*, Gislayne C. P. Borges, Marcos Honorato-da-Silva, José Z. O. Passavante and Maria G. G. S. Cunha Universidade Federal de Pernambuco, Avenida Professor Moraes Rego, 123, Cidade Universitaria, Recife, Pernambuco, 50670-901, Brazil * Corresponding author. Email: [email protected] Abstract: We aimed verify the composition of the oscillations in the environmental, which can resuspend phytoplankton community and this life forms that or deposit cells on the bottom. The knowledge of occur in the Capibaribe River estuary, Pernambuco, composition and life forms of the biotic communities is Brazil. This is a highly impacted ecosystem by anthropic a necessary tool to understand the mechanism and the activities. We collected samples of the phytoplankton ecological importance of aquatic ecosystems (Eskinazi- community at three stations, during three months of Leça et al. 2004; Cloern and Jassby 2010). each season: dry, from October to December 2010; rainy, In this context, our study aimed to analyze the from May to July 2011. We collected samples during the composition of the phytoplankton community and the low and high tide, at the spring tide. We classified the main life forms of species occurring in the Capibaribe species based on life forms. We identified 127 taxa, and River estuary (Pernambuco), which is an important the majority of species were freshwater planktonic form aquatic body in Northeast Brazil. -
Research Article
Ecologica Montenegrina 20: 24-39 (2019) This journal is available online at: www.biotaxa.org/em Biodiversity of phototrophs in illuminated entrance zones of seven caves in Montenegro EKATERINA V. KOZLOVA1*, SVETLANA E. MAZINA1,2 & VLADIMIR PEŠIĆ3 1 Department of Ecological Monitoring and Forecasting, Ecological Faculty of Peoples’ Friendship University of Russia, 115093 Moscow, 8-5 Podolskoye shosse, Ecological Faculty, PFUR, Russia 2 Department of Radiochemistry, Chemistry Faculty of Lomonosov Moscow State University 119991, 1-3 Leninskiye Gory, GSP-1, MSU, Moscow, Russia 3 Department of Biology, Faculty of Sciences, University of Montenegro, Cetinjski put b.b., 81000 Podgorica, Montenegro *Corresponding autor: [email protected] Received 4 January 2019 │ Accepted by V. Pešić: 9 February 2019 │ Published online 10 February 2019. Abstract The biodiversity of the entrance zones of the Montenegro caves is barely studied, therefore the purpose of this study was to assess the biodiversity of several caves in Montenegro. The samples of phototrophs were taken from various substrates of the entrance zone of 7 caves in July 2017. A total of 87 species of phototrophs were identified, including 64 species of algae and Cyanobacteria, and 21 species of Bryophyta. Comparison of biodiversity was carried out using Jacquard and Shorygin indices. The prevalence of cyanobacteria in the algal flora and the dominance of green algae were revealed. The composition of the phototrophic communities was influenced mainly by the morphology of the entrance zones, not by the spatial proximity of the studied caves. Key words: karst caves, entrance zone, ecotone, algae, cyanobacteria, bryophyte, Montenegro. Introduction The subterranean karst forms represent habitats that considered more climatically stable than the surface. -
AQUATIC MACROINVERTEBRATE and DIATOM SURVEYS in TETLIN NATIONAL WILDLIFE REFUGE, AK Final Report December 2012
AQUATIC MACROINVERTEBRATE AND DIATOM SURVEYS IN TETLIN NATIONAL WILDLIFE REFUGE, AK Final Report December 2012 Prepared by: Daniel Rinella, Daniel Bogan, and Rebecca Shaftel Alaska Natural Heritage Program University of Alaska Anchorage Beatrice McDonald Hall 3211 Providence Dr. Anchorage, AK 99508 Tetlin Macroinvertebrate and Diatom Surveys Table of Contents INTRODUCTION 1 METHODS 1 Stream habitat measurements 3 Macroinvertebrate and diatom sampling 4 Sample processing 4 Data analysis 5 RESULTS AND DISCUSSION 6 CONCLUSIONS 16 REFERENCES 17 i Tetlin Macroinvertebrate and Diatom Surveys Tables Table 1. Selected habitat characteristics for Desper, Gardiner, and Scottie Creeks. ........................................ 8 Table 2. Average taxa richness for macroinvertebrate and diatom quantitative and multi-habitat samples over the four year sampling period. Quantitative samples were pooled to calculate richness. ................... 8 Table 3. Jaccard (persistence) and Bray-curtis (stability) distances for macroinvertebrate communities from Desper, Gardiner, and Scottie creeks based on three inter-annual comparisons from 2007 to 2010. ...............................................................................................................................................................................................15 Table 4. Jaccard (persistence) and Bray-curtis (stability) distances for diatom communities from Desper, Gardiner, and Scottie creeks based on three inter-annual comparisons from 2007 to 2010. .......................15 -
Diatom Species Richness in Algal Flora of Pamir, Tajikistan
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by European Scientific Journal (European Scientific Institute) European Scientific Journal January 2018 edition Vol.14, No.3 ISSN: 1857 – 7881 (Print) e - ISSN 1857- 7431 Diatom Species Richness in Algal Flora of Pamir, Tajikistan Toirbek Niyatbekov, PhD. Institute of Botany, Plant Physiology and Genetics., Dushanbe, Republic of Tajikistan Sophia Barinova, Prof. Institute of Evolution, University of Haifa, Mount Carmel, Haifa, Israel Doi: 10.19044/esj.2018.v14n3p301 URL:http://dx.doi.org/10.19044/esj.2018.v14n3p301 Abstract The main objective of this study was to quantify the diatom floral richness and analyze the diversity structure in Pamir aquatic habitats. We revealed 455 species (552 with infraspecific taxa) of diatom algae compiled from reference studies in 1930-1983 that was done for the first time, and our data after many floristic surveys conducted in the field during 2000-2015. Floristic analysis of the total species richness revealed 65 rare and 22 species new for Pamir algal flora, and has allowed us to identify prevailed Classes, Orders, and Families in the diatoms. Only four genera are prevailing and contain about 30% of total richness. The Pinnularia species from them are representing extremely large numbers (39). They prefer fresh, clear, circumneutral-water habitats in natural aquatic objects with developed phytoperiphytonic communities, included many rare species and can be peculiarities of the Pamir diatom flora. Keywords: Diatoms, Algal flora, Pamir, Tajikistan Introduction Freshwater algae are widely used in ecological assessment of water quality (Stevenson, 2014). It is very important to know about algal diversity in inland waters because most of algal species can be used as environmental indicators. -
Cattle Access Affects Periphyton Community Structure in Tennessee Farm Ponds
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Masters Theses Graduate School 8-2010 Cattle access affects periphyton community structure in Tennessee farm ponds. Robert Gerald Middleton University of Tennessee - Knoxville, [email protected] Follow this and additional works at: https://trace.tennessee.edu/utk_gradthes Part of the Environmental Microbiology and Microbial Ecology Commons Recommended Citation Middleton, Robert Gerald, "Cattle access affects periphyton community structure in Tennessee farm ponds.. " Master's Thesis, University of Tennessee, 2010. https://trace.tennessee.edu/utk_gradthes/732 This Thesis is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Masters Theses by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a thesis written by Robert Gerald Middleton entitled "Cattle access affects periphyton community structure in Tennessee farm ponds.." I have examined the final electronic copy of this thesis for form and content and recommend that it be accepted in partial fulfillment of the equirr ements for the degree of Master of Science, with a major in Wildlife and Fisheries Science. Matthew J. Gray, Major Professor We have read this thesis and recommend its acceptance: S. Marshall Adams, Richard J. Strange Accepted for the Council: Carolyn R. Hodges Vice Provost and Dean of the Graduate School (Original signatures are on file with official studentecor r ds.) To the Graduate Council: I am submitting herewith a thesis written by Robert Gerald Middleton entitled “Cattle access affects periphyton community structure in Tennessee farm ponds.” I have examined the final electronic copy of this thesis for form and content and recommend that it be accepted in partial fulfillment of the requirements for the degree of Master of Science, with a major in Wildlife and Fisheries Science.