Proceedings of the 1St Central-European Diatom Meeting
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Protocols for Monitoring Harmful Algal Blooms for Sustainable Aquaculture and Coastal Fisheries in Chile (Supplement Data)
Protocols for monitoring Harmful Algal Blooms for sustainable aquaculture and coastal fisheries in Chile (Supplement data) Provided by Kyoko Yarimizu, et al. Table S1. Phytoplankton Naming Dictionary: This dictionary was constructed from the species observed in Chilean coast water in the past combined with the IOC list. Each name was verified with the list provided by IFOP and online dictionaries, AlgaeBase (https://www.algaebase.org/) and WoRMS (http://www.marinespecies.org/). The list is subjected to be updated. Phylum Class Order Family Genus Species Ochrophyta Bacillariophyceae Achnanthales Achnanthaceae Achnanthes Achnanthes longipes Bacillariophyta Coscinodiscophyceae Coscinodiscales Heliopeltaceae Actinoptychus Actinoptychus spp. Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Akashiwo Akashiwo sanguinea Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Amphidinium Amphidinium spp. Ochrophyta Bacillariophyceae Naviculales Amphipleuraceae Amphiprora Amphiprora spp. Bacillariophyta Bacillariophyceae Thalassiophysales Catenulaceae Amphora Amphora spp. Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Anabaenopsis Anabaenopsis milleri Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema Anagnostidinema amphibium Anagnostidinema Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema lemmermannii Cyanobacteria Cyanophyceae Oscillatoriales Microcoleaceae Annamia Annamia toxica Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Aphanizomenon Aphanizomenon flos-aquae -
Protistology Diatom Assemblages of the Brackish Bolshaya Samoroda
Protistology 13 (4), 215–235 (2019) Protistology Diatom assemblages of the brackish Bolshaya Samoroda River (Russia) studied via light micro- scopy and DNA metabarcoding Elena A. Selivanova, Marina E. Ignatenko, Tatyana N. Yatsenko-Stepanova and Andrey O. Plotnikov Institute for Cellular and Intracellular Symbiosis of the Ural Branch of the Russian Academy of Sciences, Orenburg 460000, Russia | Submitted October 15, 2019 | Accepted December 10, 2019 | Summary Diatoms are highly diverse and widely spread aquatic photosynthetic protists. Studies of regional patterns of diatom diversity are substantial for understanding taxonomy and biogeography of diatoms, as well as for ecological perspectives and applied purposes. DNA barcoding is a modern approach, which can resolve many problems of diatoms identification and can provide valuable information about their diversity in different ecosystems. However, only few studies focused on diatom assemblages of brackish rivers and none of them applied the genetic tools. Herein, we analyzed taxonomic composition and abundance of diatom assemblages in the brackish mixohaline Bolshaya Samoroda River flowing into the Elton Lake (Volgograd region, Russia) using light microscopy and high-throughput sequencing of the V4 region of the 18S rDNA gene amplicons. In total, light microscopy of the samples taken in 2011–2014 and 2018 allowed to distinguish 39 diatom genera, represented by 76 species and infraspecies taxa. Twenty three species of diatoms were recorded in the river for the first time. Next-generation sequencing revealed a larger number of diatom taxa (26 genera and 47 OTUs in two samples vs. 20 genera and 37 species estimated by light microscopy). As a result, sequences of Haslea, Fistulifera, Gedaniella were recorded in the river for the first time. -
Research Article
Ecologica Montenegrina 20: 24-39 (2019) This journal is available online at: www.biotaxa.org/em Biodiversity of phototrophs in illuminated entrance zones of seven caves in Montenegro EKATERINA V. KOZLOVA1*, SVETLANA E. MAZINA1,2 & VLADIMIR PEŠIĆ3 1 Department of Ecological Monitoring and Forecasting, Ecological Faculty of Peoples’ Friendship University of Russia, 115093 Moscow, 8-5 Podolskoye shosse, Ecological Faculty, PFUR, Russia 2 Department of Radiochemistry, Chemistry Faculty of Lomonosov Moscow State University 119991, 1-3 Leninskiye Gory, GSP-1, MSU, Moscow, Russia 3 Department of Biology, Faculty of Sciences, University of Montenegro, Cetinjski put b.b., 81000 Podgorica, Montenegro *Corresponding autor: [email protected] Received 4 January 2019 │ Accepted by V. Pešić: 9 February 2019 │ Published online 10 February 2019. Abstract The biodiversity of the entrance zones of the Montenegro caves is barely studied, therefore the purpose of this study was to assess the biodiversity of several caves in Montenegro. The samples of phototrophs were taken from various substrates of the entrance zone of 7 caves in July 2017. A total of 87 species of phototrophs were identified, including 64 species of algae and Cyanobacteria, and 21 species of Bryophyta. Comparison of biodiversity was carried out using Jacquard and Shorygin indices. The prevalence of cyanobacteria in the algal flora and the dominance of green algae were revealed. The composition of the phototrophic communities was influenced mainly by the morphology of the entrance zones, not by the spatial proximity of the studied caves. Key words: karst caves, entrance zone, ecotone, algae, cyanobacteria, bryophyte, Montenegro. Introduction The subterranean karst forms represent habitats that considered more climatically stable than the surface. -
Differentiating Iconella from Surirella (Bacillariophyceae): Typifying Four Ehrenberg Names and a Preliminary Checklist of the African Taxa
A peer-reviewed open-access journal PhytoKeys 82: 73–112 (2017)DifferentiatingIconella from Surirella (Bacillariophyceae)... 73 doi: 10.3897/phytokeys.82.13542 RESEARCH ARTICLE http://phytokeys.pensoft.net Launched to accelerate biodiversity research Differentiating Iconella from Surirella (Bacillariophyceae): typifying four Ehrenberg names and a preliminary checklist of the African taxa Regine Jahn1, Wolf-Henning Kusber1, Christine Cocquyt2 1 Botanischer Garten und Botanisches Museum Dahlem, Freie Universität Berlin, Königin-Luise-Str. 6-8, 14195 Berlin, Germany 2 Botanic Garden Meise, Nieuwelaan 38, 1680, Meise, Belgium Corresponding author: Regine Jahn ([email protected]) Academic editor: K. Manoylov | Received 4 May 2017 | Accepted 31 May 2017 | Published 3 July 2017 Citation: Jahn R, Kusber W-H, Cocquyt C (2017) DifferentiatingIconella from Surirella (Bacillariophyceae): typifying four Ehrenberg names and a preliminary checklist of the African taxa. PhytoKeys 82: 73–112. https://doi.org/10.3897/ phytokeys.82.13542 Abstract To comply with the new phylogeny within the Surirellales as supported by molecular and morphological data, re-evaluations and re-combinations of taxa from and within the genera Surirella, Cymatopleura, and Stenopterobia and with the re-established genus Iconella are necessary. Since the African diatom flora is rich with taxa from these genera, especially Iconella, and the authors have studied these taxa recently, describing also new taxa, a preliminary checklist of African Iconella and Surirella is here presented. 94 names are contained on this list. 57 taxa have been transferred to Iconella; 55 taxa were formerly ranked within Surirella and two taxa within Stenopterobia. 10 taxa have stayed within Surirella and six taxa have been transferred from Cymatopleura to Surirella. -
Cattle Access Affects Periphyton Community Structure in Tennessee Farm Ponds
University of Tennessee, Knoxville TRACE: Tennessee Research and Creative Exchange Masters Theses Graduate School 8-2010 Cattle access affects periphyton community structure in Tennessee farm ponds. Robert Gerald Middleton University of Tennessee - Knoxville, [email protected] Follow this and additional works at: https://trace.tennessee.edu/utk_gradthes Part of the Environmental Microbiology and Microbial Ecology Commons Recommended Citation Middleton, Robert Gerald, "Cattle access affects periphyton community structure in Tennessee farm ponds.. " Master's Thesis, University of Tennessee, 2010. https://trace.tennessee.edu/utk_gradthes/732 This Thesis is brought to you for free and open access by the Graduate School at TRACE: Tennessee Research and Creative Exchange. It has been accepted for inclusion in Masters Theses by an authorized administrator of TRACE: Tennessee Research and Creative Exchange. For more information, please contact [email protected]. To the Graduate Council: I am submitting herewith a thesis written by Robert Gerald Middleton entitled "Cattle access affects periphyton community structure in Tennessee farm ponds.." I have examined the final electronic copy of this thesis for form and content and recommend that it be accepted in partial fulfillment of the equirr ements for the degree of Master of Science, with a major in Wildlife and Fisheries Science. Matthew J. Gray, Major Professor We have read this thesis and recommend its acceptance: S. Marshall Adams, Richard J. Strange Accepted for the Council: Carolyn R. Hodges Vice Provost and Dean of the Graduate School (Original signatures are on file with official studentecor r ds.) To the Graduate Council: I am submitting herewith a thesis written by Robert Gerald Middleton entitled “Cattle access affects periphyton community structure in Tennessee farm ponds.” I have examined the final electronic copy of this thesis for form and content and recommend that it be accepted in partial fulfillment of the requirements for the degree of Master of Science, with a major in Wildlife and Fisheries Science. -
Floristics and Taxonomy of the Endemic Diatom Flora of the Ancient Malili Lakes, Sulawesi Island, Indonesia
University of Windsor Scholarship at UWindsor Electronic Theses and Dissertations Theses, Dissertations, and Major Papers 2005 Floristics and taxonomy of the endemic diatom flora of the ancient Malili Lakes, Sulawesi Island, Indonesia. Andrew J. Bramburger University of Windsor Follow this and additional works at: https://scholar.uwindsor.ca/etd Recommended Citation Bramburger, Andrew J., "Floristics and taxonomy of the endemic diatom flora of the ancient Malili Lakes, Sulawesi Island, Indonesia." (2005). Electronic Theses and Dissertations. 2123. https://scholar.uwindsor.ca/etd/2123 This online database contains the full-text of PhD dissertations and Masters’ theses of University of Windsor students from 1954 forward. These documents are made available for personal study and research purposes only, in accordance with the Canadian Copyright Act and the Creative Commons license—CC BY-NC-ND (Attribution, Non-Commercial, No Derivative Works). Under this license, works must always be attributed to the copyright holder (original author), cannot be used for any commercial purposes, and may not be altered. Any other use would require the permission of the copyright holder. Students may inquire about withdrawing their dissertation and/or thesis from this database. For additional inquiries, please contact the repository administrator via email ([email protected]) or by telephone at 519-253-3000ext. 3208. FLORISTICS AND TAXONOMY OF THE ENDEMIC DIATOM FLORA OF THE ANCIENT MALILI LAKES, SULAWESI ISLAND, INDONESIA BY: ANDREW J. BRAMBURGER A Thesis Submitted to the Faculty of Graduate Studies and Research Through Biological Sciences In Partial Fulfillment of the Requirements for The Degree of Master of Science at the University of Windsor Windsor, Ontario, Canada 2004 © 2004 Andrew J. -
Checklist, Qualitative and Quantitative Analysis of Marine Microalgae from Offshore Visakhapatnam, Bay Of… 15
DOI: 10.5772/intechopen.75549 ProvisionalChapter chapter 2 Checklist, Qualitative andand QuantitativeQuantitative AnalysisAnalysis ofof Marine Microalgae fromfrom OffshoreOffshore Visakhapatnam,Visakhapatnam, Bay Bay of Bengal, India forfor BiofuelBiofuel PotentialPotential Palanisamy Selvakumar, AthiaAthia Shameem,Shameem, Katru Umadevi, Boddu SivaprasadSivaprasad andand AjithAjith HaridasHaridas Additional information isis available atat thethe endend ofof thethe chapterchapter http://dx.doi.org/10.5772/intechopen.75549 Abstract Observation on the productivity parameters in relation to micro algal biodiversity helps to know the population in particular season and spatial. The study investigates in detail the seasonal and spatial variation of microalgae with special emphasis on their interrelationship of chlorophyll concentration. In order to obtain the information on distribution and abundance of Visakhapatnam Coast microalgae for isolation, fortnightly intervals samplings was carried out. Investigation has been made on the microalgae with special reference to the phylum Ochrop- hyta, Dinophyta, Chlorophyta, Euglenozoa, Haptophyta and Cyanophyta. Abundance of species under different season of pattern was Pre-monsoon>Post monsoon>Monsoon. The data evaluated from this study was used to prepare the checklist for marine microalgal diversity of Visakhapatnam offshore region. Keywords: chlorophyll, microalgal abundance, checklist of marine algae, phytoplankton, Vizag coast, Bay of Bengal 1. Introduction Andhra Pradesh is one of the six States/U.Ts of India adjoining the Bay of Bengal with a coastline of 974 km and the continental shelf area of 33, 227 sq. km. East coast India, surface currents skirting the coast move in a northerly direction during part of the year, and the opposite direction during the rest of the year [1]. Influx of untreated wastewaters into the aquatic bodies that are challenging the stability of nations [2]. -
New and Interesting Surirella Taxa (Surirellaceae, Bacillariophyta) from the Congo Basin (DR Congo)
European Journal of Taxonomy 133: 1–15 ISSN 2118-9773 http://dx.doi.org/10.5852/ejt.2015.133 www.europeanjournaloftaxonomy.eu 2015 · Cocquyt C. & Taylor J.C. This work is licensed under a Creative Commons Attribution 3.0 License. Research article New and interesting Surirella taxa (Surirellaceae, Bacillariophyta) from the Congo Basin (DR Congo) Christine COCQUYT 1 & Jonathan C. TAYLOR 2 1, 2 Botanic Garden Meise, Domein van Bouchout, B-1860 Meise, Belgium. 1 Email: [email protected] (corresponding author) 2 School of Biological Sciences, North-West University, Potchefstroom, South Africa. 2 South African Institute for Aquatic Biodiversity, Grahamstown, South Africa. Abstract. Two new diatom taxa belonging to the genus Surirella, S. ebalensis and S. congolensis, are described from material of the Congo Basin, downstream Kisangani, DR Congo. The first taxon is a small, rather common species in the studied material; the second a somewhat larger diatom that was only sporadically observed. The morphology of both taxa is examined with light and scanning electron microscopy. The differences between the new and other closely related taxa such as S. agonaensis and S. bonsaensis, and S. takoradiensis, S. tenuissima and S. pseudotenuissima, respectively, are discussed. Keywords. Africa, diatoms, new species, Surirella. Cocquyt C. & Taylor J.C. 2015. New and interesting Surirella taxa (Surirellaceae, Bacillariophyta) from the Congo Basin (DR Congo). European Journal of Taxonomy 133: 1–15. http://dx.doi.org/10.5852/ejt.2015.133 Introduction Algal reports from for the Democratic Republic of the Congo (DR Congo), formerly Belgian Congo and Zaire, are very limited (e.g., Duvigneaud & Symoens 1949; Hustedt in Huber-Pestalozzi 1949; Kufferath 1956a, b; Compère & Symoens 1987, 1988; Compère et al. -
Reference Diatom Assemblage Response to Transplantation Into a Stream Receiving
Reference Diatom Assemblage Response to Transplantation into a Stream Receiving Treatment for Acid Mine Drainage in Southeastern Ohio A thesis presented to the faculty of the College of Arts and Sciences of Ohio University In partial fulfillment of the requirements for the degree Master of Science Jonathon B. Gray November 2011 © 2011 Jonathon B. Gray. All Rights Reserved. 2 This thesis titled Reference Diatom Assemblage Response to Transplantation into a Stream Receiving Treatment for Acid Mine Drainage in Southeastern Ohio by JONATHON B. GRAY has been approved for the Program of Environmental Studies and the College of Arts and Sciences by Morgan L. Vis Professor of Environmental and Plant Biology Howard Dewald Interim Dean, College of Arts and Sciences 3 ABSTRACT GRAY, JONATHON B., M.S., November 2011, Environmental Studies Reference Diatom Assemblage Response to Transplantation into a Stream Receiving Treatment for Acid Mine Drainage in Southeastern Ohio Director of Thesis: Morgan L. Vis Acid mine drainage (AMD) is a prevalent legacy of coal mining within Appalachia. Streams receiving AMD effluent are drastically altered both chemically and biologically. Hewett Fork, a stream in southeastern Ohio, is one such affected stream. Although treatment methods have reduced acidity considerably downstream, the ability of Hewett Fork to sustain a biological community compared to those found in reference conditions remains unclear. To assess this, tiles colonized with diatom assemblages from an unimpacted stream were transplanted into Hewett Fork along a stream health gradient, from poor to good, and sampled after one, three, and six weeks in the treated stream. Chlorophyll a concentrations and species diversity metrics were calculated to compare reference assemblages to transplanted assemblages. -
MONOGRAPH on MARINE PLANKTON of EAST COAST of INDIA a Cruise Report
MONOGRAPH ON MARINE PLANKTON OF EAST COAST OF INDIA A Cruise Report Published by Indian National Centre for Ocean Information Services (INCOIS), Ocean Valley, Pragathi Nagar (B.O.), Nizampet (S.O.) Hyderabad - 500 090, India Phone: +91-40-23895000 Fax : +91-40-23895001 Email: [email protected] Citation: K.C. Sahu, S.K. Baliarsingh, S. Srichandan, Aneesh A. Lotliker, T.S. Kumar. 2013. Monograph on Marine Plankton of East Coast of India-A Cruise Report. Indian National Centre for Ocean Information Services, Hyderabad, 146 pp. Cover design: S.K. Baliarsingh ©2013, Indian National Centre for Ocean Information Services, Hyderabad, India All rights reserved. No part of this publication may be reproduced in any form or by any means, without the prior written permission of the publishers. ISBN: 978-81-923474-2-4 Document design: Aneesh A. Lotliker & S.K. Baliarsingh Author Information Prof. K.C Sahu Dept. of Marine Sciences, Berhampur University, Odisha-760007, India Email: [email protected] S.K. Baliarsingh Dept. of Marine Sciences, Berhampur University, Odisha-760007, India Email: [email protected] S. Srichandan Dept. of Marine Sciences, Berhampur University, Odisha-760007, India Email: [email protected] Aneesh A. Lotliker, Ph.D Advisory Services and Satellite Oceanography Group (ASG) Indian national Centre for Ocean information Services (INCOIS), Hyderabad-500090, India Email: [email protected] T. Srinivasa Kumar, Ph.D Advisory Services and Satellite Oceanography Group (ASG) Indian national Centre for Ocean information Services (INCOIS), Hyderabad-500090, India Email: [email protected] PREFACE This monograph is an attempt to document the plankton encountered during the cruise program conducted during the period from 1.4.2011 to 8.4.2011. -
RECENT DIATOMS REPORTED from the CENTRAL UNITED STATES
RECENT DIATOMS REPORTED from the CENTRAL UNITED STATES: REGISTER of TAXA and SYNONYMS Report Number 77, State Biological Survey of Kansas 2045 Avenue A, Campus West, Lawrence, Kansas, 66044 USA Mark E. Eberle Department of Biological Sciences, Fort Hays State University 600 Park Street, Hays, Kansas 67601-4099 USA Original printed version: 1997 Latest electronic version: 5 December 2008 Please send comments and literature citations for additions or taxonomic changes to [email protected]. Internet homepage for this diatom list. INTRODUCTION to the LIST of DIATOM TAXA This list of diatom taxa summarizes information for over 1100 taxa and synonyms reported in published accounts of collections made in the central United States, principally within the states of Kansas, Nebraska, and Oklahoma, but also including adjacent areas in eastern Colorado and western Missouri. This summary expands an earlier annotated list of Kansas diatoms (Eberle 1982). My objective was to provide people working on diatom projects in this region with a base reference to help them assess the results of their research. The literature on diatoms is scattered among many journals and government publications. Although a thorough effort was made to locate all relevant publications for this summary, some references possibly were missed. No records from Master’s theses were incorporated into this list, and most were never published. References on fossil diatoms also were excluded, although a few have been published (e.g., Andrews 1970; Barbour 1896; Barbour 1910; Cragin 1891; Elmore 1898a, 1898b, 1914, 1917; Hanna 1932; Selva 1976, 1981). I did not examine specimens, so taxa presented here are those reported in the literature or their possible synonyms. -
Occasional Paper #156, Part I
OCCASIONAL PAPERS OF THE CALIFORNIA ACADEMY OF SCIENCES No. 156: Part I February 12, 2009 CATALOGUE OF DIATOM NAMES PART I: INTRODUCTION AND BIBLIOGRAPHY Elisabeth Fourtanier and J. Patrick Kociolek Cover image Ehrenberg Plate 18, fig. A. “Massen-Ansicht im Mikroskop bei 300 ma- liger Vergrösserung im Druchmesser.” Sample from Richmond, Virginia. (Ehrenberg C.G. 1854. Zur Mikrogeologie. Atlas. Monats- berichte. Berliner Akademie.) Catalogue of Diatom Names Part I: Introduction and Bibliography Elisabeth Fourtanier and J. Patrick Kociolek California Academy of Sciences and University of Colorado Museum of Natural History California Academy of Sciences San Francisco, California, USA 2009 SCIENTIFIC PUBLICATIONS Alan E. Leviton, Ph.D., Editor Hallie Brignall, M.A., Managing Editor Gary C. Williams, Ph.D., Associate Editor Michael T. Ghiselin, Ph.D., Associate Editor Michele L. Aldrich, Ph.D., Consulting Editor Copyright © 2009 by the California Academy of Sciences, 55 Concourse Drive, San Francisco, California 94118 All rights reserved. No part of this publication may be reproduced or transmitted in any form or by any means, electronic or mechanical, including photocopying, recording, or any information storage or retrieval system, without permission in writ- ing from the publisher. ISSN 0068-5461 Printed in the United States of America Allen Press, Lawrence, Kansas 66044 Table of Contents Introduction Aims of the catalogue . .v History of catalogues of diatom names . .v Approaches to developing this compilation . .viii The making of this catalogue . .viii Bibliography . .ix Acknowledgments . .ix References for the Introduction . .x Dedication . .x Bibliography . .1 A. Prichard: Plate 9, Diatoms. In: A history of infusoria, living and fossil: arranged according to Die infusionsthierchen of C.G.