2347-503X Assessment of Coastal Pollution Using Faunal Composit
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Investigating Genetic, Gene Expression and Proteomic Changes Over Temperature Gradients in Intertidal Nerita Species
INVESTIGATING GENETIC, GENE EXPRESSION AND PROTEOMIC CHANGES OVER TEMPERATURE GRADIENTS IN INTERTIDAL NERITA SPECIES Shorash Amin Bachelor of Biomedical Science (1A Honours) Submitted in fulfilment of the requirements for the degree of Doctor of Philosophy School of Biomedical Sciences Faculty of Health Queensland University of Technology 2018 Investigating genetic, gene expression and proteomic changes over temperature gradients in intertidal Nerita species i Keywords De novo assembly; digital gene expression; genomics; heat shock protein; Ion torrent; transcriptome; Nerita albicilla; Nerita melanotragus; molluscs; proteome; RNAseq; thermal stress; Nerita melanotragus, Illumina. ii Investigating genetic, gene expression and proteomic changes over temperature gradients in intertidal Nerita species Abstract A key area of research in physiological genomics is understanding the gene expression and proteomic responses of specific species to abiotic change in their habitat. In order to investigate these responses, an appropriate group of organisms is required that is distributed across an environmental gradient. One such group of organisms that meet this requirement are class Gastropoda, which are distributed globally in a range of different environments. This highly speciose group are important socially, economically and ecologically. Species from this taxonomic group form a large component of intertidal zone fauna in many areas, globally. The intertidal zone is amongst the harshest of environments on Earth, with constant changes in temperature, pH, sea level and UV exposure. Furthermore, species inhabiting these areas are periodically submerged due to the tidal cycle. The intertidal zone can be further subdivided into the spray, upper, mid and lower intertidal sub zones. Abiotic stresses also vary across these habitats as does the level of submergence. -
(Harmful) Algal Blooms (H)Abs
Centre National d’Etudes Spatiales Cyanobacteria in Baltic sea, 30-June-2003, MODIS. State of the Art Remote Sensing for Health applications N° Ref.: 044-R755-v1.1-a 15 July 2010 Centre National d’Etudes Spatiales Page: 1/43 State of the art: remote sensing for health applications Date: 15 July 2010 Ref. 044-R755-v1.1-a All rights reserved - 2009-2010 ACRI-ST – All rights reserved CONFIDENTIAL Centre National d’Etudes Spatiales Page: 2/43 State of the art: remote sensing for health applications Date: 15 July 2010 Ref. 044-R755-v1.1-a All rights reserved - 2009-2010 ACRI-ST – All rights reserved CONFIDENTIAL Control document table Nom et Fonction Date Signature Prepared by Jérôme Bruniquel 15/07/2010 Chloé Vincent 15/07/2010 Reviewed by Antoine Mangin 15/07/2010 Authorised Odile Fanton d’Andon 15/07/2010 by Change log Version Date Description Modification 1.0 15/07/2010 Final report on the state of the art – Remote Translation of the Sensing applied to Health French version Centre National d’Etudes Spatiales Page: 3/43 State of the art: remote sensing for health applications Date: 15 July 2010 Ref. 044-R755-v1.1-a All rights reserved - 2009-2010 ACRI-ST – All rights reserved CONFIDENTIAL Centre National d’Etudes Spatiales Page: 4/43 State of the art: remote sensing for health applications Date: 15 July 2010 Ref. 044-R755-v1.1-a All rights reserved - 2009-2010 ACRI-ST – All rights reserved CONFIDENTIAL Table of content 1 INTRODUCTION ....................................................................................................................................... 7 2 INFECTIOUS DISEASES TRANSMITTED BY AGENTS OR BY WATER ..................................... -
Observations on Neritina Turrita (Gmelin 1791) Breeding Behaviour in Laboratory Conditions
Hristov, K.K. AvailableInd. J. Pure online App. Biosci. at www.ijpab.com (2020) 8(5), 1-10 ISSN: 2582 – 2845 DOI: http://dx.doi.org/10.18782/2582-2845.8319 ISSN: 2582 – 2845 Ind. J. Pure App. Biosci. (2020) 8(5), 1-10 Research Article Peer-Reviewed, Refereed, Open Access Journal Observations on Neritina turrita (Gmelin 1791) Breeding Behaviour in Laboratory Conditions Kroum K. Hristov* Department of Chemistry and Biochemistry, Medical University - Sofia, Sofia - 1431, Bulgaria *Corresponding Author E-mail: [email protected] Received: 15.08.2020 | Revised: 22.09.2020 | Accepted: 24.09.2020 ABSTRACT Neritina turrita (Gmelin 1791) along with other Neritina, Clithon, Septaria, and other fresh- water snails are popular animals in ornamental aquarium trade. The need for laboratory-bred animals, eliminating the potential biohazard risks, for the ornamental aquarium trade and the growing demand for animal model systems for biomedical research reasons the work for optimising a successful breading protocol. The initial results demonstrate N. turrita as tough animals, surviving fluctuations in pH from 5 to 9, and shifts from a fresh-water environment to brackish (2 - 20 ppt), to sea-water (35 ppt) salinities. The females laid over 630 (at salinities 0, 2, 10 ppt and temperatures of 25 - 28oC) white oval 1 by 0.5 mm egg capsules continuously within 2 months after collecting semen from several males. Depositions of egg capsules are set apart 6 +/-3 days, and consist on average of 53 (range 3 to 192) egg capsules. Production of viable veligers was recorded under laboratory conditions. Keywords: Neritina turrita, Sea-water, Temperatures, Environment INTRODUCTION supposably different genera forming hybrids Neritininae are found in the coastal swamps of with each other, suggesting their close relation. -
Checklist of Marine Gastropods Around Tarapur Atomic Power Station (TAPS), West Coast of India Ambekar AA1*, Priti Kubal1, Sivaperumal P2 and Chandra Prakash1
www.symbiosisonline.org Symbiosis www.symbiosisonlinepublishing.com ISSN Online: 2475-4706 Research Article International Journal of Marine Biology and Research Open Access Checklist of Marine Gastropods around Tarapur Atomic Power Station (TAPS), West Coast of India Ambekar AA1*, Priti Kubal1, Sivaperumal P2 and Chandra Prakash1 1ICAR-Central Institute of Fisheries Education, Panch Marg, Off Yari Road, Versova, Andheri West, Mumbai - 400061 2Center for Environmental Nuclear Research, Directorate of Research SRM Institute of Science and Technology, Kattankulathur-603 203 Received: July 30, 2018; Accepted: August 10, 2018; Published: September 04, 2018 *Corresponding author: Ambekar AA, Senior Research Fellow, ICAR-Central Institute of Fisheries Education, Off Yari Road, Versova, Andheri West, Mumbai-400061, Maharashtra, India, E-mail: [email protected] The change in spatial scale often supposed to alter the Abstract The present study was carried out to assess the marine gastropods checklist around ecologically importance area of Tarapur atomic diversity pattern, in the sense that an increased in scale could power station intertidal area. In three tidal zone areas, quadrate provide more resources to species and that promote an increased sampling method was adopted and the intertidal marine gastropods arein diversity interlinks [9]. for Inthe case study of invertebratesof morphological the secondand ecological largest group on earth is Mollusc [7]. Intertidal molluscan communities parameters of water and sediments are also done. A total of 51 were collected and identified up to species level. Physico chemical convergence between geographically and temporally isolated family dominant it composed 20% followed by Neritidae (12%), intertidal gastropods species were identified; among them Muricidae communities [13]. -
Bab Iv Hasil Penelitian Dan Pembahasan
BAB IV HASIL PENELITIAN DAN PEMBAHASAN A. Hasil Penelitian dan Pembahasan Tahap 1 1. Kondisi Faktor Abiotik Ekosistem perairan dapat dipengaruhi oleh suatu kesatuan faktor lingkungan, yaitu biotik dan abiotik. Faktor abiotik merupakan faktor alam non-organisme yang mempengaruhi proses perkembangan dan pertumbuhan makhluk hidup. Dalam penelitian ini, dilakukan analisis faktor abiotik berupa faktor kimia dan fisika. Faktor kimia meliputi derajat keasaman (pH). Sedangkan faktor fisika meliputi suhu dan salinitas air laut. Hasil pengukuran suhu, salinitas, dan pH dapat dilihat sebagai tabel berikut: Tabel 4.1 Faktor Abiotik Pantai Peh Pulo Kabupaten Blitar Faktor Abiotik No. Letak Substrat Suhu Salinitas Ph P1 29,8 20 7 Berbatu dan Berpasir S1 1. P2 30,1 23 7 Berbatu dan Berpasir P3 30,5 28 7 Berbatu dan Berpasir 2. P1 29,7 38 8 Berbatu dan Berpasir S2 P2 29,7 40 7 Berbatu dan Berpasir P3 29,7 33 7 Berbatu dan Berpasir 3. P1 30,9 41 7 Berbatu dan Berpasir S3 P2 30,3 42 8 Berbatu dan Berpasir P3 30,1 41 7 Berbatu dan Berpasir 77 78 Tabel 4.2 Rentang Nilai Faktor Abiotik Pantai Peh Pulo Faktor Abiotik Nilai Suhu (˚C) 29,7-30,9 Salinitas (%) 20-42 Ph 7-8 Berdasarkan pengukuran faktor abiotik lingkungan, masing-masing stasiun pengambilan data memiliki nilai yang berbeda. Hal ini juga mempengaruhi kehidupan gastropoda yang ditemukan. Kehidupan gastropoda sangat dipengaruhi oleh besarnya nilai suhu. Suhu normal untuk kehidupan gastropoda adalah 26-32˚C.80 Sedangkan menurut Sutikno, suhu sangat mempengaruhi proses metabolisme suatu organisme, gastropoda dapat melakukan proses metabolisme optimal pada kisaran suhu antara 25- 32˚C. -
Avaliação Da Toxicidade Do Cloridrato Polihexametileno Biguanida (PHMB) Em Biomphalaria Glabrata (Say 1818)
UNIVERSIDADE FEDERAL DE GOIÁS PROGRAMA DE PÓS-GRADUAÇÃO EM BIOLOGIA DA RELAÇÃO PARASITO-HOSPEDEIRO Amanda de Oliveira Melo Avaliação da toxicidade do cloridrato polihexametileno biguanida (PHMB) em Biomphalaria glabrata (Say 1818) Goiânia 2018 Amanda de Oliveira Melo Avaliação da toxicidade do cloridrato polihexametileno biguanida (PHMB) em Biomphalaria glabrata (Say 1818) Dissertação de Mestrado apresentado ao Programa de Pós-Graduação em Biologia da Relação Parasito-Hospedeiro da Universidade Federal de Goiás para obtenção do Título de Mestre Orientador: Prof. Dr. José Clecildo Barreto Bezerra Coorientador: Prof. Dr. Thiago Lopes Rocha Goiânia 2018 Programa de Pós-Graduação em Biologia da Relação Parasito-Hospedeiro da Universidade Federal de Goiás BANCA EXAMINADORA DA DISSERTAÇÃO DE MESTRADO Aluna: Amanda de Oliveira Melo Orientador: Prof. Dr. José Clecildo Barreto Bezerra Coorientador: Prof. Dr. Thiago Lopes Rocha Membros: 1. Prof. Dr. José Clecildo Barreto - UFG 2. Dra. Daniella de Sousa Mendes Moreira Alves - UFG 3. Profa. Dra. Luciana Damacena Silva - UEG Data: 14/09/2018 A minha amada família, em especial aos meus pais, minha irmã e meu namorado. AGRADECIMENTOS Agradeço, primeiramente, a Deus por todas as conquistas concedidas a mim e a toda minha família para o desenvolvimento deste trabalho ao qual eu me propus realizar. Agradeço aos meus pais, Wilmar e Luciana, pelo carinho e amor. Vocês foram meus exemplos de persistência, coragem, força e determinação, sempre me incentivando a continuar e a buscar melhores resultados. A vocês todo o meu amor. Agradeço a minha irmã Natália, uma pessoa iluminada que sempre me mostrou que eu posso ir além. Agradeço ao meu namorado Luiz Claudio, que me incentivou e me apoiou em todas as minhas decisões, sempre me fazendo sorrir com sua alegria. -
MOLECULAR PHYLOGENY of the NERITIDAE (GASTROPODA: NERITIMORPHA) BASED on the MITOCHONDRIAL GENES CYTOCHROME OXIDASE I (COI) and 16S Rrna
ACTA BIOLÓGICA COLOMBIANA Artículo de investigación MOLECULAR PHYLOGENY OF THE NERITIDAE (GASTROPODA: NERITIMORPHA) BASED ON THE MITOCHONDRIAL GENES CYTOCHROME OXIDASE I (COI) AND 16S rRNA Filogenia molecular de la familia Neritidae (Gastropoda: Neritimorpha) con base en los genes mitocondriales citocromo oxidasa I (COI) y 16S rRNA JULIAN QUINTERO-GALVIS 1, Biólogo; LYDA RAQUEL CASTRO 1,2 , Ph. D. 1 Grupo de Investigación en Evolución, Sistemática y Ecología Molecular. INTROPIC. Universidad del Magdalena. Carrera 32# 22 - 08. Santa Marta, Colombia. [email protected]. 2 Programa Biología. Universidad del Magdalena. Laboratorio 2. Carrera 32 # 22 - 08. Sector San Pedro Alejandrino. Santa Marta, Colombia. Tel.: (57 5) 430 12 92, ext. 273. [email protected]. Corresponding author: [email protected]. Presentado el 15 de abril de 2013, aceptado el 18 de junio de 2013, correcciones el 26 de junio de 2013. ABSTRACT The family Neritidae has representatives in tropical and subtropical regions that occur in a variety of environments, and its known fossil record dates back to the late Cretaceous. However there have been few studies of molecular phylogeny in this family. We performed a phylogenetic reconstruction of the family Neritidae using the COI (722 bp) and the 16S rRNA (559 bp) regions of the mitochondrial genome. Neighbor-joining, maximum parsimony and Bayesian inference were performed. The best phylogenetic reconstruction was obtained using the COI region, and we consider it an appropriate marker for phylogenetic studies within the group. Consensus analysis (COI +16S rRNA) generally obtained the same tree topologies and confirmed that the genus Nerita is monophyletic. The consensus analysis using parsimony recovered a monophyletic group consisting of the genera Neritina , Septaria , Theodoxus , Puperita , and Clithon , while in the Bayesian analyses Theodoxus is separated from the other genera. -
Molecular Biomarker Studies on Ecotoxicological Impact of Pollutants on the Marine Gastropods Along the Goa Coast
MOLECULAR BIOMARKER STUDIES ON ECOTOXICOLOGICAL IMPACT OF POLLUTANTS ON THE MARINE GASTROPODS ALONG THE GOA COAST JACKY BHAGAT A Thesis submitted to Goa University for the Award of the Degree of DOCTOR OF PHILOSOPHY in MARINE SCIENCES Research Guide: Dr. B. S. Ingole, Professor & Chief Scientist, CSIR-National Institute of Oceanography Dona Paula, Goa - 403004 Co-guide: Dr. A. Sarkar Former Senior Principal Scientist CSIR-National Institute of Oceanography Dona Paula, Goa - 403004 Place of Work: CSIR-National Institute of Oceanography Dona Paula, Goa - 403004 Details of Ph.D. Registration: No. 201109255, 15 November, 2011 I | Page Statement As required under the University ordinance OB-9.9 (v-vi), I state that this thesis entitled "Molecular Biomarker Studies On Ecotoxicological Impact Of Pollutants On The Marine Gastropods Along The Goa Coast" is my original contribution and it has not been submitted on any previous occasion. The literature related to the problem investigated has been cited. Due acknowledgements have been made wherever facilities and suggestions have been availed of. JACKY BHAGAT CSIR-National Institute of Oceanography, Goa. 3rd April, 2017 II | Page Certificate This is to certify that the thesis entitled "Molecular Biomarker Studies On Ecotoxicological Impact Of Pollutants On The Marine Gastropods Along The Goa Coast" submitted by Shri Jacky Bhagat for the award of the degree of Doctor of Philosophy in Marine Science is based on original studies carried out by him under my supervision. The thesis or any part thereof has not been previously submitted for any other degree or diploma in any institution. Dr. B. S. Ingole Research Supervisor CSIR-National Institute of Oceanography, Dona Paula, Goa 3rd April, 2017 III | Page List of Papers Published Papers from thesis: 1. -
Lamellidens Marginalis
HAEMATOLOGlCAL STUDIES ON THE FRESHWATER MUSSEL Lamellidens marginal is (Lamark, 1819) THESIS SUBMITTED TO COCHIN UNIVERSITY OF SCIENCE AND TECHNOLOGY IN PARTIAL FULFILMENT OF THE REQUIREMENTS FOR THE DEGREE OF DOCTOR OF PHILOSOPHY UNDER THE FACULTY OF ENVIRONMENTAL STUDIES BY K· RAMANATHAN SCHOOL OF ENVIRONMENTAL STUDIES COCHIN UNIVERSITY OF SCIENCE AND TECHNOLOGY COCHIN 682 016 1993 CERTIFICATE This is to certify that this thesis is a bonafide record of the research work carried out by Mr.K.Ramanathan, full-time research scholar, under my scientific supervision and guidance, in partial fulfilment of the requirements for the degree of Doctor of Philosophy of the Cochin University of Science and Technology under the School of Environmental Studies. and no part thereof has been presented for the award of any other degree, diploma, or associateship in any University. Dr.A.l~~H HEAD 0 THE DEPARTMENT, School of Environmental Studies, Cochin University of Science and Technology, COCHIN-682 016. DECLARATION I, K.Ramanathan, do here by declare that this thesis entitled " HAEMATOLOGICAL STUDIES ON FRESHWATER MUSSEL- Lamellidens marginalis (Lamarck,1819'" is a genuine record of the research work carried out by me under the guidance and supervision of Dr.A.Mohandas, Head, School of Environmental Studies, Cochin University of Science and Technology, and no part has been previously formed the basis for the award of any degree, diploma, or associateship of any university. • 1 Cochin-682 016 K.Ramanathan ACKNOWLEDGEMENTS I wish to express my Slncere gratitude to Dr.A.Mohandas, Head, School of Environmental Studies, Cochin University of Science and Technology, for giving me an opportunity to work under his supervision, encouragement, and for critical evaluation of the manuscript. -
The Marine Biodiversity and Fisheries Catches of the Pitcairn Island Group
The Marine Biodiversity and Fisheries Catches of the Pitcairn Island Group THE MARINE BIODIVERSITY AND FISHERIES CATCHES OF THE PITCAIRN ISLAND GROUP M.L.D. Palomares, D. Chaitanya, S. Harper, D. Zeller and D. Pauly A report prepared for the Global Ocean Legacy project of the Pew Environment Group by the Sea Around Us Project Fisheries Centre The University of British Columbia 2202 Main Mall Vancouver, BC, Canada, V6T 1Z4 TABLE OF CONTENTS FOREWORD ................................................................................................................................................. 2 Daniel Pauly RECONSTRUCTION OF TOTAL MARINE FISHERIES CATCHES FOR THE PITCAIRN ISLANDS (1950-2009) ...................................................................................... 3 Devraj Chaitanya, Sarah Harper and Dirk Zeller DOCUMENTING THE MARINE BIODIVERSITY OF THE PITCAIRN ISLANDS THROUGH FISHBASE AND SEALIFEBASE ..................................................................................... 10 Maria Lourdes D. Palomares, Patricia M. Sorongon, Marianne Pan, Jennifer C. Espedido, Lealde U. Pacres, Arlene Chon and Ace Amarga APPENDICES ............................................................................................................................................... 23 APPENDIX 1: FAO AND RECONSTRUCTED CATCH DATA ......................................................................................... 23 APPENDIX 2: TOTAL RECONSTRUCTED CATCH BY MAJOR TAXA ............................................................................ -
Type of the Paper (Article
Preprints (www.preprints.org) | NOT PEER-REVIEWED | Posted: 2 March 2018 doi:10.20944/preprints201803.0022.v1 1 Article 2 Gastropod Shell Dissolution as a Tool for 3 Biomonitoring Marine Acidification, with Reference 4 to Coastal Geochemical Discharge 5 David J. Marshall1*, Azmi Aminuddin1, Nurshahida Atiqah Hj Mustapha1, Dennis Ting Teck 6 Wah1 and Liyanage Chandratilak De Silva2 7 8 1Faculty of Science, Universiti Brunei Darussalam, Jalan Tungku Link, BE1410, Bandar Seri Begawan, Brunei 9 Darussalam; 10 2Faculty of Integrated Technologies, Universiti Brunei Darussalam, Jalan Tungku Link, BE1410, Bandar Seri 11 Begawan, Brunei Darussalam; 12 [email protected] (DJM); [email protected] (AA); [email protected] (NAM); 13 [email protected] (DTT); [email protected] (LCD) 14 Abstract: Marine water pH is becoming progressively reduced in response to atmospheric CO2 15 elevation. Considering that marine environments support a vast global biodiversity and provide a 16 variety of ecosystem functions and services, monitoring of the coastal and intertidal water pH 17 assumes obvious significance. Because current monitoring approaches using meters and loggers 18 are typically limited in application in heterogeneous environments and are financially prohibitive, 19 we sought to evaluate an approach to acidification biomonitoring using living gastropod shells. We 20 investigated snail populations exposed naturally to corrosive water in Brunei (Borneo, South East 21 Asia). We show that surface erosion features of shells are generally more sensitive to acidic water 22 exposure than other attributes (shell mass) in a study of rocky-shore snail populations (Nerita 23 chamaeleon) exposed to greater or lesser coastal geochemical acidification (acid sulphate soil 24 seepage, ASS), by virtue of their spatial separation. -
Variación Fenotípica De La Concha En Neritinidae (Gastropoda: Neritimorpha) En Ríos De Puerto Rico
Variación fenotípica de la concha en Neritinidae (Gastropoda: Neritimorpha) en ríos de Puerto Rico Juan Felipe Blanco1, Silvana Tamayo1 & Frederick N. Scatena2,3 1. Instituto de Biología, Facultad de Ciencias Exactas y Naturales, Universidad de Antioquia, Calle 67 # 53-108, Medellín, Colombia. Apartado Aéreo 1226; [email protected]; [email protected] 2. Departamento de Ciencias de la Tierra y Ambientales, Universidad de Pensilvania, Filadelfia, Estados Unidos. 3. Fallecido Recibido 12-XII-2013. Corregido 20-I-2014. Aceptado 13-II-2014. Abstract: Phenotypic variability of the shell in Neritinidae (Gastropoda: Neritimorpha) in Puerto Rican rivers. Gastropods of the Neritinidae family exhibit an amphidromous life cycle and an impressive variability in shell coloration in Puerto Rican streams and rivers. Various nominal species have been described, but Neritina virginea [Linné 1758], N. punctulata [Lamarck 1816] and N. reclivata [Say 1822] are the only broadly reported. However, recent studies have shown that these three species are sympatric at the river scale and that species determination might be difficult due to the presence of intermediate color morphs. Individuals (8 751) were collected from ten rivers across Puerto Rico, and from various segments and habitats in Mameyes River (the most pristine island-wide) during three years (2000-2003), and they were assigned to one of seven phenotypes corresponding to nominal species and morphs (non-nominal species). The “axial lines and dots” morph cor- responding to N. reclivata was the most frequent island-wide, while the patelliform N. punctulata was scant, but the only found in headwater reaches. The “yellowish large tongues” phenotype, typical of N.