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Supplementary Table S1. Protein Expression Changes in the Functionally Annotated Categories Within Cluster from Figure 8A

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Supplementary Table S1. Protein Expression Changes in the Functionally Annotated Categories Within Cluster from Figure 8A Supplementary Table S1. Protein expression changes in the functionally annotated categories within cluster from Figure 8A. Acute phase response signaling Human equivalent Zq (log2 FC) FDR Accession No. Ac. No. No. Protein 120 1 4 7 120 1 4 7 peptides Q13233 F1SLK9 PIG Uncharacterized protein MAP3K1 0.09 0.00 0.00 0.55 1 - I3LQR9 PIG Fibrinogen alpha chain 0.89 0.23 0.03 0.11 11 - F1RX36 PIG Fibrinogen alpha chain 0.97 0.09 0.00 0.09 4 P02675 I3L651 PIG Uncharacterized protein 0.91 0.24 0.05 0.23 27 - Q8SPS7 PIG Haptoglobin 0.11 0.02 0.00 0.36 14 P45985 F1SS51 PIG Uncharacterized protein (Fragment) MAP2K4 0.26 0.06 0.09 0.33 1 - P00747 HUMAN Plasminogen 0.93 0.00 0.02 0.67 1 - P18648 PIG Apolipoprotein A-I 0.36 0.19 0.64 0.86 34 P02679 F1RX35 PIG Uncharacterized protein LOC100627396 0.99 0.40 0.02 0.11 23 P04196 F1SFI5 PIG Uncharacterized protein HRG 0.44 0.04 0.55 0.82 12 - P27485 PIG Retinol-binding protein 4 0.34 0.30 0.55 0.81 2 - F1S0J2 PIG Uncharacterized protein C4BPA 0.58 0.17 0.15 0.65 4 - P08835 PIG Serum albumin 0.04 0.09 0.39 0.75 27 - P06867 PIG Plasminogen 0.94 0.17 0.08 0.82 13 - O19063 PIG Serum amyloid P-component 0.93 0.16 0.09 0.85 6 - O19062 PIG C-reactive protein 0.93 0.01 0.00 0.78 7 - P00450 HUMAN Ceruloplasmin 0.32 0.61 0.36 0.41 1 - F1SB81 PIG Plasminogen 0.99 0.17 0.14 0.52 2 - Q19AZ8 PIG Prothrombin 0.36 0.08 0.54 0.90 6 - I3L818 PIG Uncharacterized protein (Fragment) SERPINF2 0.91 0.59 0.12 0.65 4 P05546 F1RKY2 PIG Uncharacterized protein SERPIND1 0.38 0.44 0.72 0.86 9 P02749 I3LGN5 PIG Uncharacterized protein (Fragment) 0.75 0.25 0.44 0.81 1 - P02768 HUMAN Serum albumin 0.71 0.32 0.65 0.96 3 Q06033 F1SH94 PIG Uncharacterized protein ITIH3 0.79 0.37 0.46 0.78 14 - P50390 PIG Transthyretin 0.45 0.57 0.80 0.92 7 - F1SFI7 PIG Alpha-2-HS-glycoprotein (Fragment) 0.65 0.54 0.75 0.77 1 - P01025 PIG Complement C3 0.32 0.67 0.58 0.77 83 - P09571 PIG Serotransferrin 0.07 0.32 0.76 0.87 33 P01023 I3LQ17 PIG Uncharacterized protein 0.57 0.57 0.48 0.80 50 P02748 F1SMJ6 PIG Uncharacterized protein (Fragment) C9 0.97 0.55 0.51 0.83 7 - F1S1A9 PIG Uncharacterized protein APOA2 0.92 0.64 0.59 0.81 3 P01024 I3LTB8 PIG Uncharacterized protein 0.63 0.56 0.69 0.88 2 - P79263 PIG Inter-alpha-trypsin inhibitor heavy chain H4 0.93 0.22 0.55 0.26 39 P02751 F1SS24 PIG Uncharacterized protein FN1 0.99 0.99 0.67 0.46 63 - Q03710 PIG Complement factor B (Fragment) 0.95 0.72 0.67 0.64 1 - P50447 PIG Alpha-1-antitrypsin 0.27 0.38 0.73 0.87 12 - O02668 PIG Inter-alpha-trypsin inhibitor heavy chain H2 0.70 0.80 0.78 0.89 23 - Q0PM28 PIG Pigment epithelium-derived factor 0.87 0.58 0.80 0.81 13 - P29700 PIG Alpha-2-HS-glycoprotein (Fragment) 0.51 0.68 0.90 0.90 4 - P50828 PIG Hemopexin 0.44 0.44 0.55 0.80 11 - A0PFK4 PIG F-actin capping protein subunit beta 2 0.99 1.00 0.67 0.54 1 - F1SH92 PIG Inter-alpha-trypsin inhibitor heavy chain H4 0.94 0.38 0.67 0.40 6 - P14477 PIG Fibrinogen beta chain (Fragment) 0.99 0.72 0.92 0.69 1 - Q6VPV1 PIG Complement component C5 0.93 0.68 0.67 0.90 20 - H0YA55 HUMAN Serum albumin (Fragment) 0.39 0.45 0.82 0.82 1 - A0PFK5 PIG Capping protein (Actin filament) muscle Z-line, alpha 1 0.98 0.99 0.75 0.82 6 - K9J6H8 PIG Alpha-2-macroglobulin 0.73 0.47 0.85 1.00 3 - I3LPQ9 PIG Uncharacterized protein (Fragment) TRADD 0.88 0.93 0.99 0.99 1 - G3V387 HUMAN Short peptide from AAT (Fragment) 0.85 0.86 0.96 0.98 1 - F1S0J3 PIG Uncharacterized protein C4BPB 0.99 0.86 0.39 0.81 1 - H9LBP0 PIG Serpin peptidase inhibitor clade D member 1 (Fragment) 0.98 0.57 0.55 0.96 2 - F1S8T1 PIG Uncharacterized protein NOLC1 0.99 1.01 0.98 0.92 1 - P32394 PIG Heme oxygenase 1 0.97 0.99 0.90 0.92 7 - P19133 PIG Ferritin light chain (Fragment) 1.00 1.01 0.98 0.80 3 - Q28833 PIG von Willebrand factor (Fragment) 0.97 0.90 0.92 0.94 7 - P02751 HUMAN Fibronectin 0.96 1.01 0.96 0.92 5 - P02675 HUMAN Fibrinogen beta chain 0.02 0.99 1.00 0.99 2 - Q07890 HUMAN Son of sevenless homolog 2 0.97 0.98 0.92 0.97 2 - Q2MJK3 PIG GTPase NRas 0.46 0.40 1.00 1.00 1 - P79335 PIG Plasminogen activator inhibitor 1 0.72 0.86 0.98 0.99 2 - P14460 PIG Fibrinogen alpha chain (Fragment) 0.99 0.94 0.99 0.97 2 Q16539 F1RYA1 PIG Uncharacterized protein MAPK14 0.99 1.01 0.92 0.96 2 - P01100 HUMAN Proto-oncogene c-Fos 0.97 1.01 1.00 0.96 1 - F1RUN2 PIG Serum albumin 0.90 0.99 0.99 0.98 2 - Q19S50 PIG Signal transducer and activator of transcription 3 1.00 1.00 0.97 0.87 3 - F1SA28 PIG Uncharacterized protein ECSIT 0.96 0.99 0.93 0.93 1 P27361 I3LVK2 PIG Uncharacterized protein (Fragment) MAPK3 0.98 1.00 0.97 0.99 2 - P00736 HUMAN Complement C1r subcomponent 0.98 1.00 0.92 0.98 1 Q15750 K7GLB8 PIG Uncharacterized protein TAB1 0.59 0.94 1.00 0.99 1 - P40189 HUMAN Interleukin-6 receptor subunit beta 0.63 1.00 0.94 0.73 1 - A7XNS1 PIG Nuclear factor of kappa light polypeptide enhancer in B-cells 1 0.79 0.93 0.98 1.00 2 Q9Y243 K7GNL2 PIG Uncharacterized protein (Fragment) AKT3 0.98 0.99 1.00 1.00 1 - A7XUJ6 PIG TNF receptor-associated factor 6 0.99 0.99 0.98 0.93 1 P10301 F1RHW4 PIG Uncharacterized protein RRAS 1.00 1.00 1.00 1.00 5 - P62993 HUMAN Growth factor receptor-bound protein 2 0.99 0.99 1.00 0.96 3 - O97506 PIG Kallikrein 0.98 0.99 1.00 1.00 4 - P04366 PIG Protein AMBP (Fragment) 0.97 0.99 1.00 0.98 3 - M3TYR4 PIG Mitogen-activated protein kinase kinase 3 1.00 0.99 1.00 1.00 2 P61978 I3LQS0 PIG Uncharacterized protein HNRNPK 0.95 0.99 1.00 0.95 11 P36507 I3L5D4 PIG Uncharacterized protein MAP2K2 0.99 1.00 1.00 1.00 4 - P19823 HUMAN Inter-alpha-trypsin inhibitor heavy chain H2 0.99 0.89 0.99 0.96 1 - Q7YRV6 PIG Suppressor of cytokine signaling 2 1.00 0.99 1.00 1.00 1 - M3V839 PIG Mitogen-activated protein kinase 3 0.99 0.96 0.98 0.99 3 - P61978 HUMAN Heterogeneous nuclear ribonucleoprotein K 0.98 0.99 0.98 1.00 4 Q02750 I3LQS6 PIG Uncharacterized protein (Fragment) MAP2K1 0.97 0.96 1.00 1.00 3 - P04150 HUMAN Glucocorticoid receptor 0.99 1.00 0.98 0.96 1 - A9QT41 PIG Inhibitor of kappa light polypeptide gene enhancer in B-cells kinase gamma 1.00 1.00 1.00 0.97 2 Q07890 F1SHY0 PIG Uncharacterized protein (Fragment) SOS2 0.93 1.00 0.99 0.98 1 P02549 F1RR78 PIG Uncharacterized protein LOC100049693 0.96 0.90 0.95 0.98 148 - P04179 HUMAN Superoxide dismutase [Mn], mitochondrial 0.74 0.99 0.90 0.92 1 - P02792 HUMAN Ferritin light chain 0.98 0.96 0.84 0.75 1 - P62070 HUMAN Ras-related protein R-Ras2 0.99 1.00 0.99 0.94 1 - G9BWQ1 PIG V-akt murine thymoma viral oncogene-like 1 0.99 0.99 0.88 0.83 1 - F1RWY6 PIG Uncharacterized protein RIPK1 0.93 0.78 0.68 0.87 1 - Q9NPH3 HUMAN Interleukin-1 receptor accessory protein 0.91 0.83 0.87 0.83 1 - P15884 HUMAN Transcription factor 4 0.96 0.88 0.76 0.82 1 P30519 F1RK58 PIG Uncharacterized protein HMOX2 0.93 0.79 0.71 0.85 2 - Q07889 HUMAN Son of sevenless homolog 1 0.98 0.94 0.92 0.65 1 - Q2TAM5 HUMAN RELA protein 0.93 0.73 0.88 0.99 1 - H0YCB4 HUMAN Transcription factor p65 (Fragment) 0.93 0.54 0.35 0.70 1 - P28768 PIG Superoxide dismutase [Mn], mitochondrial (Fragment) 0.86 1.00 0.60 0.55 7 Response to wounding Human equivalent Zq (log2 FC) FDR Accession No. Ac. No. No. Protein 120 1 4 7 120 1 4 7 peptides - A5D9N3 PIG Allograft inflammatory factor 1 0.97 0.27 0.01 0.01 1 - P19619 PIG Annexin A1 0.97 0.05 0.11 0.49 16 - Q29549 PIG Clusterin 0.43 0.01 0.02 0.75 28 - F1S0J2 PIG Uncharacterized protein C4BPA 0.58 0.17 0.15 0.65 4 - O19063 PIG Serum amyloid P-component 0.93 0.16 0.09 0.85 6 - O19062 PIG C-reactive protein 0.93 0.01 0.00 0.78 7 - F1STZ3 PIG Uncharacterized protein C1QC 0.30 0.23 0.32 0.80 1 - Q69DL0 PIG Complement C1q subcomponent subunit A 0.96 0.18 0.10 0.76 4 - F1SFI4 PIG Uncharacterized protein KNG1 0.57 0.48 0.51 0.75 12 - F1SFI7 PIG Alpha-2-HS-glycoprotein (Fragment) 0.65 0.54 0.75 0.77 1 - P01025 PIG Complement C3 0.32 0.67 0.58 0.77 83 P01023 I3LQ17 PIG Uncharacterized protein 0.57 0.57 0.48 0.80 50 P02748 F1SMJ6 PIG Uncharacterized protein (Fragment) C9 0.97 0.55 0.51 0.83 7 - F1SGT4 PIG Uncharacterized protein CD44 0.96 0.41 0.44 0.75 3 - F1S1A9 PIG Uncharacterized protein APOA2 0.92 0.64 0.59 0.81 3 P01024 I3LTB8 PIG Uncharacterized protein 0.63 0.56 0.69 0.88 2 - P79263 PIG Inter-alpha-trypsin inhibitor heavy chain H4 0.93 0.22 0.55 0.26 39 - A2SW51 PIG Monocyte differentiation antigen CD14 0.78 0.23 0.67 0.87 2 - Q03710 PIG Complement factor B (Fragment) 0.95 0.72 0.67 0.64 1 - P29700 PIG Alpha-2-HS-glycoprotein (Fragment) 0.51 0.68 0.90 0.90 4 - Q9TUQ3 PIG Complement component C7 0.76 0.71 0.85 0.92 7 - F1S790 PIG Uncharacterized protein C8B 0.84 0.64 0.74 0.92 3 - A5A767 PIG Adaptor-related protein complex 3, beta-1 subunit 0.89 0.76 0.97 1.00 1 - F1S643 PIG Uncharacterized protein CFH 0.91 0.81 0.76 0.87 9 - P16050 HUMAN Arachidonate 15-lipoxygenase 0.85 0.89 0.73 0.89 1 - F1SH92 PIG Inter-alpha-trypsin inhibitor heavy chain H4 0.94 0.38 0.67 0.40 6 - B0LFE9 PIG Complement component 4 0.83 0.76 0.82 0.83 38 - P01042 HUMAN Kininogen-1 0.09 0.18 0.93 0.94 1 - Q8WMQ3 PIG CD9 antigen 0.99 0.86 0.48 0.73 1 - Q6VPV1 PIG Complement component C5 0.93 0.68 0.67 0.90 20 - A0SEH3 PIG Complement component C8G 0.84 0.71 0.85 0.96 5 - Q69DK8 PIG Complement C1s subcomponent 0.72 0.66 0.93 0.97 4 - P53714 PIG Integrin beta-2 0.91 0.99 0.92 0.89 6 - F1SMJ1 PIG Complement component C7 (Fragment) 0.99 0.81 0.89 0.88 1 - P51779 PIG Complement factor D 0.75 0.52 0.83 0.93 1 - K9J6H8 PIG Alpha-2-macroglobulin 0.73 0.47 0.85 1.00 3 - F1SMI8 PIG Uncharacterized protein C6 0.96 0.86 0.70 0.82 2 - A8DSD5 PIG Integrin beta 0.96 0.98 0.90 0.88 1 - A1E295 PIG Cathepsin B 1.00 1.00 0.75 0.52 6 - F1S0J3 PIG Uncharacterized
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