RESEARCH HIGHLIGHTS Scientific Literature
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The 2014 Golden Gate National Parks Bioblitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event
National Park Service U.S. Department of the Interior Natural Resource Stewardship and Science The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 ON THIS PAGE Photograph of BioBlitz participants conducting data entry into iNaturalist. Photograph courtesy of the National Park Service. ON THE COVER Photograph of BioBlitz participants collecting aquatic species data in the Presidio of San Francisco. Photograph courtesy of National Park Service. The 2014 Golden Gate National Parks BioBlitz - Data Management and the Event Species List Achieving a Quality Dataset from a Large Scale Event Natural Resource Report NPS/GOGA/NRR—2016/1147 Elizabeth Edson1, Michelle O’Herron1, Alison Forrestel2, Daniel George3 1Golden Gate Parks Conservancy Building 201 Fort Mason San Francisco, CA 94129 2National Park Service. Golden Gate National Recreation Area Fort Cronkhite, Bldg. 1061 Sausalito, CA 94965 3National Park Service. San Francisco Bay Area Network Inventory & Monitoring Program Manager Fort Cronkhite, Bldg. 1063 Sausalito, CA 94965 March 2016 U.S. Department of the Interior National Park Service Natural Resource Stewardship and Science Fort Collins, Colorado The National Park Service, Natural Resource Stewardship and Science office in Fort Collins, Colorado, publishes a range of reports that address natural resource topics. These reports are of interest and applicability to a broad audience in the National Park Service and others in natural resource management, including scientists, conservation and environmental constituencies, and the public. The Natural Resource Report Series is used to disseminate comprehensive information and analysis about natural resources and related topics concerning lands managed by the National Park Service. -
Acetogen Communities in the Gut of Herbivores and Their Potential Role in Syngas Fermentation
fermentation Article Acetogen Communities in the Gut of Herbivores and Their Potential Role in Syngas Fermentation Chunlei Yang Institute of Dairy Science, MoE Key Laboratory of Molecular Animal Nutrition, College of Animal Sciences, Zhejiang University, Hangzhou 310058, China; [email protected] Received: 2 May 2018; Accepted: 4 June 2018; Published: 7 June 2018 Abstract: To better understand the effects of host selection on gut acetogens and their potential role in syngas fermentation, the composition and hydrogenotrophic features of acetogen populations in cow and sheep rumens, rabbit ceca, and horse feces were studied. The acetogens detected in horses and rabbits were more phylogenetically diverse than those in cows and sheep, suggesting that the host species plays an important role in shaping gut acetogen populations. Acetogen enrichments from these animals presented good capacities to use hydrogen, with acetate as the major end product. Minor propionate, butyrate, and isovalerate were also produced. During 48 h of incubation, acetogen enrichments from horse consumed 4.75 moles of H2 to every 1 mole of acetate—significantly lower than rabbits, cows, and sheep (5.17, 5.53, and 5.23 moles, respectively) (p < 0.05)—and produced significantly more butyrate (p < 0.05). Enrichments from cows and sheep produced significantly higher amounts of propionate when compared to rabbits or horses (p < 0.05); enrichments from sheep produced the highest amounts of isovalerate (p < 0.05). These short chain fatty acids are important precursors for the synthesis of biofuel products, suggesting that gut contents of herbivores may be promising sources for harvesting functional acetogens for biofuel production. -
Dugesiana, Año 22, No. 1, Enero-Junio 2015, Es Una Publicación Semestral, Editada Por La Universidad De Guadalajara, a Través
Dugesiana, Año 22, No. 1, Enero-Junio 2015, es una publicación Semestral, editada por la Universidad de Guadalajara, a través del Centro de Estudios en Zoología, por el Centro Universitario de Ciencias Biológicas y Agropecuarias. Camino Ramón Padilla Sánchez # 2100, Nextipac, Zapopan, Jalisco, Tel. 37771150 ext. 33218, http://dugesiana.cucba.udg.mx, [email protected]. Editor responsable: José Luis Navarrete Heredia. Reserva de Derechos al Uso Exclusivo 04-2009-062310115100-203, ISSN: 2007-9133, otorgados por el Instituto Nacional del Derecho de Autor. Responsable de la última actualización de este número: Coordinación de Tecnologías para el Aprendizaje, Unidad Multimedia Instruccional, M.B.A. Oscar Carbajal Mariscal. Fecha de la última modificación 30 de Junio 2015, con un tiraje de un ejemplar. Las opiniones expresadas por los autores no necesariamente reflejan la postura del editor de la publicación. Queda estrictamente prohibida la reproducción total o parcial de los contenidos e imágenes de la publicación sin previa autorización de la Universidad de Guadalajara. Dugesiana 22(1): 43-50 Fecha de publicación: 30 de junio de 2015 ©Universidad de Guadalajara Revision of Moorella Cameron, 1913 (Hymenoptera: Encyrtidae) Revisión de Moorella Cameron, 1913 (Hymenoptera: Encyrtidae) Serguei Vladimirovich Triapitsyn1 and Vladimir Alexandrovich Trjapitzin2 1Entomology Research Museum, Department of Entomology, University of California, Riverside, California, 92521, USA. 2Do vostrebovania, Post Office 129344 (ulitsa Letchika Babushkina, 7), Moscow, Russia. ABSTRACT A diagnosis of the New World encyrtid wasp genus Moorella Cameron, 1913, a key to females of its six species, their synopsis, and descriptions and illustrations of M. alini Trjapitzin and Triapitsyn sp. n. (Brazil), M. irwini Triapitsyn and Trjapitzin sp. -
Evaluating the Probability of CRISPR-Based Gene Drive Contaminating Another Species
bioRxiv preprint doi: https://doi.org/10.1101/776609; this version posted September 19, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY 4.0 International license. Evaluating the Probability of CRISPR-based Gene Drive Contaminating Another Species 1 2 3 4 Virginie Courtier-Orgogozo , Antoine Danchin , Pierre-Henri Gouyon and Christophe Boëte 1 I nstitut Jacques Monod, CNRS, UMR 7592, Université de Paris, Paris, France 2 I nstitut Cochin INSERM U1016 – CNRS UMR8104 – Université Paris Descartes, Paris, France 3 I nstitut de Systématique, Évolution, Biodiversité, Muséum National d'Histoire Naturelle, CNRS, Sorbonne Université, EPHE, UA, Paris, France 4 I SEM, Université de Montpellier, CNRS, IRD, EPHE, Montpellier, France Abstract The probability D that a given CRISPR-based gene drive element contaminates another, non-target species can be estimated by the following Drive Risk Assessment Quantitative Estimate (DRAQUE) Equation: D = (hyb+transf).express.cut.flank.immune.nonextinct with hyb = probability of hybridization between the target species and a non-target species transf = probability of horizontal transfer of a piece of DNA containing the gene drive cassette from the target species to a non-target species (with no hybridization) express = probability that the Cas9 and guide RNA genes are expressed cut = probability that the CRISPR-guide RNA recognizes and cuts at a DNA site in the new host flank = probability that the gene drive cassette inserts at the cut site immune = probability that the immune system does not reject Cas9-expressing cells nonextinct = probability of invasion of the drive within the population We discuss and estimate each of the seven parameters of the equation, with particular emphasis on possible transfers within insects, and between rodents and humans. -
A Survey of Carbon Fixation Pathways Through a Quantitative Lens
Journal of Experimental Botany, Vol. 63, No. 6, pp. 2325–2342, 2012 doi:10.1093/jxb/err417 Advance Access publication 26 December, 2011 REVIEW PAPER A survey of carbon fixation pathways through a quantitative lens Arren Bar-Even, Elad Noor and Ron Milo* Department of Plant Sciences, The Weizmann Institute of Science, Rehovot 76100, Israel * To whom correspondence should be addressed. E-mail: [email protected] Received 15 August 2011; Revised 4 November 2011; Accepted 8 November 2011 Downloaded from Abstract While the reductive pentose phosphate cycle is responsible for the fixation of most of the carbon in the biosphere, it http://jxb.oxfordjournals.org/ has several natural substitutes. In fact, due to the characterization of three new carbon fixation pathways in the last decade, the diversity of known metabolic solutions for autotrophic growth has doubled. In this review, the different pathways are analysed and compared according to various criteria, trying to connect each of the different metabolic alternatives to suitable environments or metabolic goals. The different roles of carbon fixation are discussed; in addition to sustaining autotrophic growth it can also be used for energy conservation and as an electron sink for the recycling of reduced electron carriers. Our main focus in this review is on thermodynamic and kinetic aspects, including thermodynamically challenging reactions, the ATP requirement of each pathway, energetic constraints on carbon fixation, and factors that are expected to limit the rate of the pathways. Finally, possible metabolic structures at Weizmann Institute of Science on July 3, 2016 of yet unknown carbon fixation pathways are suggested and discussed. -
Encyrtidae Walker X X X X X X X X X X X X X X X X X X X X X
Family/Subfamily Genus/Tribe Species Author Near Neot Pala Afro Orie Aust USA CAN AB BC MB NB NF NS NWT ON PEI QC SK YT AK GL Tetracneminae Acerophagoides almon Noyes x Tetracneminae Acerophagoides Blanchard x Tetracneminae Aenasius advena Compere x x x Tetracneminae Aenasius arizonensis (Girault) x x Tetracneminae Aenasius bolowi Mercet x Tetracneminae Aenasius caeruleus Brues x Tetracneminae Aenasius cirrha Noyes & Ren x Tetracneminae Aenasius frontalis Compere x Tetracneminae Aenasius insularis Compere x Tetracneminae Aenasius kerrichi Noyes & Ren x Tetracneminae Aenasius longiscapus Compere x Tetracneminae Aenasius lua Noyes & Ren x Tetracneminae Aenasius paulistus Compere x Tetracneminae Aenasius phenacocci (Ashmead) x Tetracneminae Aenasius tachigaliae (Brues) x Tetracneminae Aenasius Walker x x x x x x Tetracneminae ? Aenasius Walker x x x x x Tetracneminae nr Aenasius Walker x Tetracneminae Aeptencyrtus bruchi (De Santis) x Tetracneminae Aeptencyrtus De Santis x Tetracneminae Aglyptus rufus (Dalman) x Tetracneminae Aglyptus Förster x Tetracneminae ? Aglyptus Förster x Tetracneminae Anagyrus abdulrassouli Myartseva, Sugonjaev & Trjapitzin x Tetracneminae Anagyrus agraensis Saraswat x x Tetracneminae Anagyrus antoninae Timberlake x x x x x Tetracneminae Anagyrus aper Noyes & Menezes x x x Tetracneminae Anagyrus aquilonaris (Noyes & Hayat) x Tetracneminae Anagyrus belibus (Walker) x Tetracneminae Anagyrus beneficians Compere x Tetracneminae Anagyrus californicus (Compere) x x Tetracneminae Anagyrus chrysos Noyes & Hayat x Tetracneminae -
A Preliminary Report on an Investigation Into the Biological Control of West Indian Insect Pests
E.M.B. 42. [Crown Copyright Reser-Ved:] - A PRELIMINARY REPORT ON AN INVESTIGATION INTO THE BIOLOGICAL CONTROL OF WEST INDIAN INSECT PESTS By J. G. MYERs, Sc.D., F.E.S., Entomologist, Farnham House Laboratory, Imperial Institute of Entomology. JULY, 1931. LONDON: PRINfED AND PUBLISHED BY HIS MAJESTY'S STATIONERY OFFICE To be purchased directly from H.M. STATIONERY OFFICE at the following addresteS: Adastral House, Kingsway, London, W.C.2 ; 120, George Street, Edinburgh; York Street, Manchester; I, St. Andrew's Crescent, Cardiff; 1 S• Donegall Square West, Belfast; or throu.~:h any Bookseller. 19J I. Price u. od. Net. 7o-221-42. CONTENTS. Page. Preface. 5 I.-Introduction • 8 !I.-General Considerations • 10 !!I.-Advisory Work .. 17 IV.-Practical Work 20 A.-Ecological conditions in the countries visited. '20 B.-Observations on particular insect pests. 66 (a) Sugar-cane pests 66 (1) Sugar-cane moth-borers (Diatraea spp.) 84 (2) Large moth-borer (Castnia licoides) • 102 (3) Sugar-cane froghopper (Tomaspis saccha.rina) 105 (4) Cane-root borer (Diaprepes abbreviatus) 114 (5) Minor sugar-cane pests · 116 (b) Cacao pests 118 (1) Cacao thrips (Heliothrips rubrocinctus) 120 (2) Cacao beetle (Stirastoma depressum) • 122 (c) Cotton pests • 126 {1) Pink bollworm (Platyedra gossypiella) 128 (2) Cotton leaf-worm (Alabama argillacea) 132 (3) Cotton-stainers (Dysdercus spp.) 134 (4) Green bug (Nezara viridula) 135 (d) Mahogany and cedar pests 137 (1) Mahogany tip-borer (Hypsipyla spp.) 137 (e) Arrowroot pests 144 (1) Leafroller (Calpodes ethlius) 144 (/) Sweet potato pests • 144 (1) Scarabee or Jacobs (Euscepes batatae). 144 3 (4873) Wt. -
CO-Dependent Hydrogen Production by the Facultative Anaerobe Parageobacillus Thermoglucosidasius
Mohr et al. Microb Cell Fact (2018) 17:108 https://doi.org/10.1186/s12934-018-0954-3 Microbial Cell Factories RESEARCH Open Access CO‑dependent hydrogen production by the facultative anaerobe Parageobacillus thermoglucosidasius Teresa Mohr1,4* , Habibu Aliyu1, Raphael Küchlin1, Shamara Polliack2, Michaela Zwick1, Anke Neumann1, Don Cowan2 and Pieter de Maayer3 Abstract Background: The overreliance on dwindling fossil fuel reserves and the negative climatic efects of using such fuels are driving the development of new clean energy sources. One such alternative source is hydrogen (H 2), which can be generated from renewable sources. Parageobacillus thermoglucosidasius is a facultative anaerobic thermophilic bacte- rium which is frequently isolated from high temperature environments including hot springs and compost. Results: Comparative genomics performed in the present study showed that P. thermoglucosidasius encodes two evolutionary distinct H2-uptake [Ni-Fe]-hydrogenases and one H2-evolving hydrogenases. In addition, genes encod- ing an anaerobic CO dehydrogenase (CODH) are co-localized with genes encoding a putative H2-evolving hydroge- nase. The co-localized of CODH and uptake hydrogenase form an enzyme complex that might potentially be involved in catalyzing the water-gas shift reaction (CO H2O CO2 H2) in P. thermoglucosidasius. Cultivation of P. thermo- glucosidasius DSM 2542T with an initial gas atmosphere+ → of 50%+ CO and 50% air showed it to be capable of growth at elevated CO concentrations (50%). Furthermore, GC analyses showed that it was capable of producing hydrogen at an equimolar conversion with a fnal yield of 1.08 H2/CO. Conclusions: This study highlights the potential of the facultative anaerobic P. -
Metabolic Roles of Uncultivated Bacterioplankton Lineages in the Northern Gulf of Mexico 2 “Dead Zone” 3 4 J
bioRxiv preprint doi: https://doi.org/10.1101/095471; this version posted June 12, 2017. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 1 Metabolic roles of uncultivated bacterioplankton lineages in the northern Gulf of Mexico 2 “Dead Zone” 3 4 J. Cameron Thrash1*, Kiley W. Seitz2, Brett J. Baker2*, Ben Temperton3, Lauren E. Gillies4, 5 Nancy N. Rabalais5,6, Bernard Henrissat7,8,9, and Olivia U. Mason4 6 7 8 1. Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, USA 9 2. Department of Marine Science, Marine Science Institute, University of Texas at Austin, Port 10 Aransas, TX, USA 11 3. School of Biosciences, University of Exeter, Exeter, UK 12 4. Department of Earth, Ocean, and Atmospheric Science, Florida State University, Tallahassee, 13 FL, USA 14 5. Department of Oceanography and Coastal Sciences, Louisiana State University, Baton Rouge, 15 LA, USA 16 6. Louisiana Universities Marine Consortium, Chauvin, LA USA 17 7. Architecture et Fonction des Macromolécules Biologiques, CNRS, Aix-Marseille Université, 18 13288 Marseille, France 19 8. INRA, USC 1408 AFMB, F-13288 Marseille, France 20 9. Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia 21 22 *Correspondence: 23 JCT [email protected] 24 BJB [email protected] 25 26 27 28 Running title: Decoding microbes of the Dead Zone 29 30 31 Abstract word count: 250 32 Text word count: XXXX 33 34 Page 1 of 31 bioRxiv preprint doi: https://doi.org/10.1101/095471; this version posted June 12, 2017. -
Bulletin 124
//r SMITHSONIAN INSTITUTION UNITED STATES NATIONAL MUSEUM Bulletin 124 THE TYPE SPECIES OF THE GENERA OF CHALCIDOIDEA OR CHALCID-FLIES BY A. B. GAHAN and MARGARET M. PAGAN Of the Bureau of Entomeloiy United States Department of Agriculture .^^xm '«s"/^^^^ aT5-fci'^.,^V **^J> ;* Hiijea ! WASHINGTON GOVERNMENT PRINTING OFFICE 1923 SMITHSONIAN INSTITUTION UNITED STATES NATIONAL MUSEUM Bulletin 124 THE TYPE SPECIES OF THE GENERA OF CHALCIDOIDEA OR CHALCID-FLIES A. B. GAHAN and MARGARET M. FAGAN Of the Bureau of Entomology United States Department of Agriculture WASHINGTON GOVERNMENT PRINTING OFFICE 1923 ADDITIONAL COPIES OF THIS PtTBLICATION MAY BE PROCURED FROM THE SUPERINTENDENT OF DOCUMENTS GOVERNMENT PRINTING OFFICE WASmNGTON, D. C. AT 15 CENTS PER COPY PURCHASER AGREES NOT TO RESELL OR DISTRIBUTE THIS COPY FOR PROFIT.—PUB. RES. 57, APPROVED MAY 11, 1922 ADVERTISEMENT. The scientific publications of the United States National Museum consist of t'wo series, the Proceedings and the Bulletins. The Proceedings^ the first volume of "which was issued in 1878, are intended primarily as a medium for the publication of original, and usually brief, papers based on the collections of the National Museum, jDresenting newly acquired facts in zoology, geology, and anthro- pology, including descriptions of new forms of animals, and revisions of limited groups. One or two volumes are issued annually and dis- tributed to libraries and scientific organizations. A limited number of copies of each paper, in pamphlet form, is distributed to specialists and others interested in the different subjects, as soon as printed. Tlie dates of publication are recorded in the tables of contents of the volumes. -
Redalyc.Diversity of Encyrtidae (Hymenoptera: Chalcidoidea
Revista Mexicana de Biodiversidad ISSN: 1870-3453 [email protected] Universidad Nacional Autónoma de México México Rodríguez, José Manuel; Rodríguez-Velez, Beatriz; Zaragoza-Caballero, Santiago; Noguera-Martínez, Felipe Arturo; González-Soriano, Enrique; Ramírez-García, Enrique Diversity of Encyrtidae (Hymenoptera: Chalcidoidea) collected with Malaise traps in the tropical dry forest of San Javier, Sonora, Mexico Revista Mexicana de Biodiversidad, vol. 81, núm. 3, 2010, pp. 813-822 Universidad Nacional Autónoma de México Distrito Federal, México Available in: http://www.redalyc.org/articulo.oa?id=42518439021 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Revista Mexicana de Biodiversidad 81: 813 - 822, 2010 Diversity of Encyrtidae (Hymenoptera: Chalcidoidea) collected with Malaise traps in the tropical dry forest of San Javier, Sonora, Mexico Diversidad de Encyrtidae (Hymenoptera: Chalcidoidea) recolectada con trampas Malaise en el bosque tropical caducifolio de San Javier, Sonora, México José Manuel Rodríguez1, Beatriz Rodríguez-Velez1*, Santiago Zaragoza-Caballero1, Felipe Arturo Noguera-Martínez2, Enrique González-Soriano1 and Enrique Ramírez-García2 1Departamento de Zoología, Instituto de Biología, Universidad Nacional Autónoma de México. Tercer Circuito Exterior S/N. Apartado postal 70-153, 04510 México, D.F., México. 2Estación de Biología Chamela, Instituto de Biología, Universidad Nacional Autónoma de México. Aparatdo postal 21. 48980 San Patricio, Jalisco, México. *Correspondent: [email protected] Abstract. Results of a faunistic study of the Encyrtidae family (parasitoid wasps) of the tropical dry forest of San Javier, Sonora, Mexico are presented. -
Old Acetogens, New Light Steven L
Eastern Illinois University The Keep Faculty Research & Creative Activity Biological Sciences January 2008 Old Acetogens, New Light Steven L. Daniel Eastern Illinois University, [email protected] Harold L. Drake University of Bayreuth Anita S. Gößner University of Bayreuth Follow this and additional works at: http://thekeep.eiu.edu/bio_fac Part of the Bacteriology Commons, Environmental Microbiology and Microbial Ecology Commons, and the Microbial Physiology Commons Recommended Citation Daniel, Steven L.; Drake, Harold L.; and Gößner, Anita S., "Old Acetogens, New Light" (2008). Faculty Research & Creative Activity. 114. http://thekeep.eiu.edu/bio_fac/114 This Article is brought to you for free and open access by the Biological Sciences at The Keep. It has been accepted for inclusion in Faculty Research & Creative Activity by an authorized administrator of The Keep. For more information, please contact [email protected]. Old Acetogens, New Light Harold L. Drake, Anita S. Gößner, & Steven L. Daniel Keywords: acetogenesis; acetogenic bacteria; acetyl-CoA pathway; autotrophy; bioenergetics; Clostridium aceticum; electron transport; intercycle coupling; Moorella thermoacetica; nitrate dissimilation Abstract: Acetogens utilize the acetyl-CoA Wood-Ljungdahl pathway as a terminal electron-accepting, energy-conserving, CO2-fixing process. The decades of research to resolve the enzymology of this pathway (1) preceded studies demonstrating that acetogens not only harbor a novel CO2-fixing pathway, but are also ecologically important, and (2) overshadowed the novel microbiological discoveries of acetogens and acetogenesis. The first acetogen to be isolated, Clostridium aceticum, was reported by Klaas Tammo Wieringa in 1936, but was subsequently lost. The second acetogen to be isolated, Clostridium thermoaceticum, was isolated by Francis Ephraim Fontaine and co-workers in 1942.