Canadian Journal of Fisheries and Aquatic Sciences

Trade-offs in the adaptation towards hatchery and natural conditions drive survival, migration, and angling vulnerability in a territorial fish in the wild

Journal: Canadian Journal of Fisheries and Aquatic Sciences

Manuscript ID cjfas-2018-0256.R1

Manuscript Type: Article

Date Submitted by the 09-Nov-2018 Author:

Complete List of Authors: Tsuboi, Jun-ichi; Fisheris Research Agency, National Research Institute of Aquaculture Kaji, Kohichi; Yamanashi Prefectural Fisheries Technology Center Baba, Shinya; Logics of Blue Arlinghaus, Robert; Humboldt University of Berlin,

Adaptation,Draft Captive breeding, Hatchery-induced selection, Stocking, Keyword: Territorial behaviour

Is the invited manuscript for consideration in a Special Not applicable (regular submission) Issue? :

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1 Trade-offs in the adaptation towards hatchery and natural conditions drive

2 survival, migration, and angling vulnerability in a territorial fish in the wild

3

4 Jun-ichi Tsuboi, Kohichi Kaji, Shinya Baba, and Robert Arlinghaus

5

6 J. Tsuboi. * Yamanashi Prefectural Fisheries Technology Center, Kai, Yamanashi

7 400-0121,

8 e-mail: [email protected]

9 K. Kaji. Yamanashi Prefectural Fisheries Technology Center, Kai, Yamanashi

10 400-0121, Japan

11 e-mail: [email protected]

12 S. Baba. Logics of Blue, Hyogo, 650-0025, Japan

13 e-mail: [email protected]

14 R. Arlinghaus. Department of Biology and Ecology of Fishes, Leibniz-Institute of

15 Freshwater Ecology and Inland Fisheries, Müggelseedamm 310, 12587 Berlin,

16 Germany; Division of Integrative Fisheries Management, Albrecht-Daniel-Thaer

17 Institute of Agricultural and Horticultural Sciences, Department for Crop and Animal

18 Sciences, Faculty of Life Sciences, Humboldt-Universität zu Berlin, Invalidenstrasse

19 42, 10115 Berlin, Germany.

20 e-mail: [email protected]

21

22 Corresponding author:

23 Jun-ichi Tsuboi

24 National Research Institute of Fisheries Science, Japan Fisheries Research and

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25 Education Agency, Nikko, Tochigi 321-1661, Japan.

26 Phone: +81-288-55-0055

27 Fax: +81-288-55-0064

28 e-mail: [email protected]

29

30 *Present address: National Research Institute of Fisheries Science, Japan Fisheries

31 Research and Education Agency, Nikko, Tochigi 321-1661, Japan

32

33

34 Draft

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35 Abstract

36 Hatchery fish to support capture fisheries need to thrive in both hatchery and natural

37 environments. We conducted joint experiments in both environments with individuals

38 stemming from multiple generations held in captivity to test the performance of

39 hatchery-reared ayu (Plecoglossus altivelis). Ayu has an annual, herbivorous, territorial

40 and amphidromous riverine fish native to Japan of high importance to recreational

41 fisheries. Hatchery fish of the 1st hatchery generation exhibited poor growth and highest

42 malformation rates relative to the 2nd and following hatchery generations. The 1st

43 generation offspring stocked into a natural stream also showed low survival and poor

44 vulnerability to angling, suggesting that maladaptation to the hatchery environment

45 explained the performance in the wild.Draft By contrast, offspring of the 7th to 9th

46 generations exhibited high growth in the hatchery environment, but when stocked into

47 the wild they also exhibited low survival, maladapted migratory behaviour, and again

48 poor vulnerability to angling. Consequently, intermediate generations held in captivity

49 were found to offer the best fisheries performance and can thus be recommended for

50 enhancements to support recreational fisheries.

51

52 Keywords Adaptation; Captive breeding; Hatchery-induced selection; Stocking;

53 Territorial behaviour

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54 Introduction

55 Stocking of hatchery-reared fish has been frequently applied in fisheries

56 enhancements and conservation, particularly in freshwater environments (Cowx 1994;

57 Lorenzen et al. 2012). Stocking programs are successful if hatchery-fish survive and

58 grow in the wild, contributing to fisheries catch or maintaining threatened or declining

59 populations. However, rapid environmental change from natural to artificial conditions

60 is expected to drive rapid evolutionary change (reviewed by Bay et al. 2017). Indeed,

61 hatchery selection negatively affects fitness in the wild, particularly in salmonids (Araki

62 et al. 2007; Christie et al. 2014, 2016, 2018). The hatchery environment offers strikingly

63 different selection pressures to natural conditions (e.g., in terms of chemical conditions,

64 density of fish, access to food, presenceDraft of predators, parasite load), such that adaptation

65 to the hatchery environment can be expected to exert rapid fitness effects on genotypes,

66 gene expression and phenotype development (Araki et al. 2008; Christie et al. 2016;

67 Uusi-Heikkilä et al. 2017). Hatchery selection effects leading to trait divergence among

68 hatchery and natural populations likely accumulate over generational time, but are most

69 severe early on in the adaptation process to artificial conditions (Araki et al. 2007, 2008)

70 and may occur even within the first generation in captivity through epigenetic effects

71 (Christie et al. 2016). In particular, hatchery selection has been shown to rapidly modify

72 phenotypic variance and mean trait values involved in maturation and growth and

73 associated behavioural and physiological traits considered important for efficient

74 biomass production in aquaculture settings (Huntingford 2004; Kostow 2004). In this

75 study, we followed Teletchea and Fontaine (2014) and defined domestication as the

76 gradual adaptation of an organism to living conditions that are determined by some

77 form of human intervention. Releasing highly domesticated fishes into the wild

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78 promises high mortality post release (Lorenzen 2006), at the possible benefit of high

79 return to the fisheries catch when large, recruited fishes are stocked that are immediately

80 targeted by recreational anglers (Mezzera and Largiadèr 2001; Baer et al. 2007;

81 Lorenzen et al. 2012).

82 Although a range of studies have shown that hatchery fish have lower fitness (e.g.,

83 survival) in the wild (Lorenzen 2000, 2006), it is less clear which phenotypic traits are

84 exactly affected and which fitness components – behaviour, growth, survival or

85 reproduction – are altered alone or in combination in hatchery selection (e.g., Brown

86 and Day 2002; Miller et al. 2004; Araki and Schmid 2010). Moreover, from an

87 anthropocentric perspective, the current body of literature suggests that some traits

88 important to fisheries may even benefitDraft from hatchery selection – notably individual

89 vulnerability to capture, and by the same token population-level catchability, which is

90 often found to be higher in domesticated phenotypes compared to wild phenotypes

91 because domesticated fish are more explorative, bolder and grow faster, in turn showing

92 greater food intake rates and vulnerability to angling (Lorenzen et al. 2012; Klefoth et al.

93 2012, 2013). Thus, although hatchery selection should lower natural fitness, it should at

94 the same time benefit vulnerability to fishing, assuming that fish that are stocked are

95 morphologically vulnerable to fishing gear (Lennox et al. 2017). However, no studies

96 have quantified the trade-offs among natural and hatchery selection in terms of natural

97 and fisheries performance over several generations in captivity when these fish are

98 stocked into the wild to support recreational fisheries catch.

99 In stock enhancements, hatchery-reared fish are released to be recaptured after

100 stocking after some period in the wild (Lorenzen et al. 2012). Hatchery fish are usually

101 more-exploratory and bolder than wild conspecifics, and as a result hatchery fish are

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102 often highly vulnerable to angling gear (Klefoth et al. 2012, 2013; Härkönen et al. 2014,

103 2016; Koeck et al. in press; reviewed in Lennox et al. 2017 and Arlinghaus et al. 2017).

104 Because domestication changes all of these traits, domesticated fish of both salmonids

105 and cyprinids were indeed found to be more readily captured than less domesticated fish

106 (Mezzera and Largiadèr 2001; Klefoth et al. 2012), leaving behind individuals, which

107 are less explorative and more timid (Alós et al. 2016; Tsuboi et al. 2016; Arlinghaus et

108 al. 2017). The fact that vulnerability to angling is a function of domestication relates to

109 a range of behavioural and physiological traits that co-vary with adaption to artificial

110 environments and that render domesticated fish a good model for trait complexes

111 affecting vulnerability to angling (Klefoth et al. 2012, 2013; Arlinghaus et al. 2017).

112 According to recent reviews andDraft empirical studies, passive gear types, such as gill

113 nets or rod-and-reel, are supposed to selectively catch bold, explorative, aggressive,

114 stress resilient, proactive and generally risk taking fish (Biro and Post 2008; Arlinghaus

115 et al. 2017; Diaz Pauli and Sih 2017; Louison et al. 2017; Klefoth et al. 2017). However,

116 does selection in captivity always and in every generation change (plastically or

117 genetically) all behaviours toward more vulnerable phenotypes? Or is it also possible

118 that some key behaviours determining vulnerability, such as aggression (Sutter et al.

119 2012), might be lost over time when fish are held in captivity (Ruzzante 1994)?

120 Aggression is often a key component of angling vulnerability in top predators (Sutter et

121 al. 2012; Wilson et al. 2015). Some fishing styles used in non-predatory fishes also take

122 advantage of aggressive and territorial behaviour, such that a possible loss of aggression

123 over generational time in hatcheries might have repercussions for fisheries catch also in

124 these species. For example, in Japan ayu (Plecoglossus altivelis) constitutes a popular

125 target for anglers. The fish is an annual, amphidromous and highly territorial fish that is

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126 herbivorous by grazing periphyton from substrates in streams. Angling of ayu uses a

127 very peculiar method that takes advantage of the territorial behaviour shown by ayu to

128 monopolize benthic algae attached to substrates (Fig. 1). In brief, a conspecific is

129 attached to a fishing line and held with a long pole in vicinity to a territorial ayu who

130 attacks the supposed intruder and is then hooked on a freely hanging treble hook (Fig.

131 1). Thus, the angling style of ayu does not use natural foraging of a baited hook as cue,

132 but takes advantage of the attack behaviour of a territorial grazer on conspecifics.

133 Because of the popularity of ayu fishing in Japan, captive breeding and release

134 programs are widely used to supplement wild populations (Iguchi 1997). Several

135 comparative studies on wild and hatchery-reared ayu have demonstrated significant

136 changes in genetic diversity, behaviour,Draft morphology, and immune function in hatchery

137 fish over time (Iguchi et al. 1999; Miwa et al. 2003; Yoshizawa 2003; Ikeda et al.

138 2005).

139 In ayu angling, it is known that larger and more aggressive individuals are more

140 vulnerable relative to smaller ones (Katano and Iguchi, 1996). Consequently, ayu

141 angling shows positively size-dependent vulnerability patterns to angling (Miura et al.

142 2012; Sato and Tsuboi 2018). Moreover, ayu individuals migrating upstream after

143 stocking were found to be more vulnerable to angling (Tsukamoto et al. 1990a, b).

144 However, territorial and (or) stronger migration tendencies are likely maladaptive in

145 highly-crowded hatchery rearing conditions (Ruzzante 1994; Brockmark and Johnsson

146 2010) and might thus be lost over generational time in captivity. Long-term

147 domesticated ayu may in response also be less vulnerable to angling after stocking, in

148 contrast to what the literature on the “domesticated phenotype” currently assumes

149 (Lorenzen et al. 2012).

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150 We tested the performance of hatchery-reared ayu in both hatchery and natural

151 environments in a number of generations in captivity, ranging from the 1st to the 9th

152 generation, in a real-scale hatchery and stocking program. In the hatchery, as fitness

153 measures, the growth rate and malformation rates were monitored in the 1st up to the

154 9th generation, and subsequently after stocking the migration, survival and vulnerability

155 to angling in the wild were assessed. We used experimental exploitation in a natural

156 stream for assessing fitness in the wild and studied the trade-off among natural and

157 hatchery adaptation on natural and fisheries-driven fitness components.

158 Both evolutionary adaption and cultured experience may contribute to the

159 domestication syndrome (Fleming et al., 1997), but our study was not designed to

160 disentangle among genetic and plasticDraft effects. Instead, we aimed at more generally

161 testing the aggregate effects of domestication over several generations on phenotypic

162 expressions and angling vulnerability using ayu as a model for a non-piscivorous

163 territorial fish, and use results to inform fisheries management based on stocking.

164

165 Material and Methods

166

167 Hatchery rearing

168 Ayu were cultured in 29 independent artificial ponds in the Yamanashi Prefectural

169 Fisheries Technology Center in Japan (35°42'16"N, 138°31'26"E), where approximately

170 2 million individuals are reared per year and stocked into the natural streams in the Fuji

171 River basin (Fig.2). Each study year, we produced two cohorts of ayu, which were

172 characterized by different number of generations held in captivity. They were always

173 separated by artificial ponds. Both cohorts in all study years originally originated from

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174 wild fish caught around the estuarine region of the (35°06'55"N,

175 138°38'25"E, Fig. 2).

176 Between 30 September and 7 October 2009, fertilization was conducted. Firstly,

177 1,500 females of parent candidates were checked whether ovulation had occurred by

178 gently pressing fish abdomen. Subsequently, all ovulated females were used for

179 fertilization. Gametes from multiple females (5 to 7 individuals) and equal number of

180 males are combined during fertilization. A total of 121 and 107 female ayu (body wet

181 mass; 123 ± 22 g, mean ± SD, egg mass, c. 0.46 mg) were used for producing fertilized

182 eggs of females of the 4th and 8th generation in captivity, respectively (Table S1). A

183 total of 5,620,000 and 5,130,000 fertilized and cohesive eggs of the new 5th and 9th

184 generation, respectively, were attachedDraft to 125 plates (100 ×100 × 3 cm,

185 width×length×thickness) made out of vinylidene chloride fiber (1,000 denier,

186 Asahi-kasei, Co., Ltd., Tokyo), following standard hatchery practice for ayu. The

187 average ratio of eyed eggs (N of eyed eggs / N of total eggs) were 50.8 and 53.4 % in

188 the 5th and 9th generations, respectively (Table S1). 14 days after fertilization, the egg

189 plates were transferred from the holding tanks (100 × 200 × 100 cm,

190 width×length×depth) supplied with freshwater to octagon-shaped 50 m2 tanks filled

191 with artificial saltwater (70 cm in depth). The two cohorts were kept separated. The day

192 after transfer, the embryos started to hatch in the octagon-shaped tanks. Transfer from

193 freshwater to saltwater was needed because in the wild ayu migrate to the estuary

194 coastal zone just after hatching in downstream sections of the river basin in autumn and

195 then back upstream up the river in spring (Katano and Iguchi, 1996). The artificial

196 seawater contained NaCl:0.301 %,MgSO4:0.078 %,MgCl2:0.060 %,CaCl2:

197 0.018 %,KCl:0.008 %,NaHCO3:0.003 %, maintained at 15 ºC with recirculating

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198 filtration (Miura et al. 2012). Each day during the holding period after hatching, larval

199 and juvenile fish were given live rotifers (Brachionus plicatilis) and a formulated ayu

200 diet composed mainly of fish meal, vitamins C, E, and eicosapentaenoic and

201 docosahexaenoic acid (“Rescue A” produced by Scientific Feed Laboratory Co., Ltd.,

202 Tokyo) to satiation using automatic feeders. Every 10 days after hatching, from each

203 hatchery pond 10 individuals were weighed as total body mass and the average mass per

204 individual was calculated.

205 Ayu were sorted by body size using 4 mm mesh 90 days after hatch to minimize

206 cannibalism. Large-size individuals were used for this study as these are usually used

207 for stocking. After sorting, fish were stocked back into the 50 m2 tanks per 70,000

208 individuals (estimated by mean bodyDraft mass as above) and acclimatized to freshwater by

209 decreasing salinity over five days. Afterwards, the fish were reared with spring water at

210 16 ºC in a flow-through system. From sorting to stocking, fish were given a formulated

211 diet composed mainly of fish meal and euphausiid (“AYU SOFT No.2” produced by

212 NOSAN Co., Ltd., Tokyo) to satiation using automatic feeders. Although two cohorts of

213 ayu were reared in different tanks throughout cultivation, environmental and dietary

214 conditions were identical among the cohorts. Flavobacterium psychrophilum, which

215 produces coldwater disease, were never detected using PCR (polymerase chain reaction)

216 targeted at the Peptidyl-prolyl cis-trans isomerase C Gene in 60 individuals randomly

217 sampled from each cohort just before stocking (Yoshiura et al. 2006). At the same time,

218 the malformation rates (lack of gill cover, lack or underdevelopment of each fin, throat

219 projection) were checked in 313 individuals per cohort via random sampling using a dip

220 net (Table 1).

221 Using the same approach as above, we cultivated among 153 to 723 thousand

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222 individuals of other generations of ayu; 1st generation (originating from wild fish

223 caught in the study river basin in March 2010) and 6th generations in captivity in 2010,

224 2nd and 7th generations in 2011, and 3rd and 8th generations in 2012 (Table S1, Table

225 1). In this way, early and long-term domesticated cohorts were directly compared in a

226 paired fashion for their performance both in hatchery and natural conditions in each

227 year. The limitation of the design is that each generation is only used once and

228 compared within a year to one other generation. However, as we analyzed our data

229 pooling all study years, we considered the design robust to see among the generation

230 patterns in performance would they emerge.

231

232 Stocking and fishing Draft

233 Six months after hatching, paired releases were conducted for four years using two

234 cohorts (Table 1). The two cohorts were stocked into the (35°42'14"N

235 138°31'29"E, altitude 360 m, river width 14.84 ± 4.18 m, mean ± SD), just beside the

236 Prefectural Fisheries Technology Center, located about 95 km upstream from the river

237 mouth. One of two cohorts of ayu were clipped their adipose fins as group marking

238 (Table 2). Swimming performance of ayu has been found before to be unaffected by this

239 practice (Katano and Uchida 2006). Approximately 10,000 individuals (mean body

240 mass 11.3‒14.3g) were stocked per cohort per year (Table 3). In 2013, only 7,515 and

241 8,082 individuals of the two cohorts (of the 3rd and 8th generations) were stocked,

242 respectively, because of scale malfunctioning in some fishes at the time of sorting. Wild

243 ayu were not able to migrate to the Arakawa River due to weirs (Fig. 1). No other

244 hatchery-reared ayu were stocked into the study site. Note that the ayu has an annual

245 life-cycle and they need temperatures of at least 9 ˚C for wintering (Tachihara and

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246 Kimura 1988; Sakae et al. 1996). In the study reach, water temperature drops to 2 ˚C

247 during mid-winter (Tsuboi unpublished data). Therefore, there were no wild recruits in

248 the study reach to compete with the stocked individuals.

249 Between late June and early October, angling experiments were conducted by staff of

250 the Prefectural Fisheries Technology Center in a 1 km river stretch that was the

251 designed study area (500 m up- and downstream from the stocking point, Fig. 2), using

252 a 7.2 m pole (long rod without a reel), a 1 lbs. monofilament line (1 pound = 0.453 kg),

253 without sinker, equipped with a hatchery-reared ayu fixed by a nose ring, to which a

254 barbless treble hook (gape width of 6.0 mm) was attached just after the anal fin (Fig. 1,

255 Table 2). A small cascade (2.5 m in height) prevented almost all individuals to migrate

256 upstream at the upper end of study area.Draft Experimental angling was conducted in a

257 randomly chosen site (up- or downstream from a stocking point) for 0.5 – 8 hours per

258 angling day. First, hatchery-reared ayu from the Prefectural Fisheries Technology

259 Center were used as a live-bait, subsequently the caught individuals (i.e., stocked and

260 angled ayu) were used as the bait. During the angling experiments, water temperature

261 ranged from 14.8 to 27.0 ˚C (21.3 ± 2.4 ˚C, mean ± SD), which was a suitable range for

262 ayu foraging (and fishing) based on agonistic behaviour (15.0 – 27.5 ˚C, Uchida et al.

263 1995). Angling pressure of any other recreational anglers was negligible, as riparian

264 trees covered part of river line of the study area, preventing the use of typical

265 angling-rods (c. 9.0 m in length). Between June and August, alternative sampling was

266 also undertaken twice using a casting net (mesh size: 1 cm, net diameter: 3.8 m,

267 maximum distance from fisher to fish: 6.8 m) as active gear type. Approximately 50

268 casts were conducted per sampling episode using random sampling around potential ayu

269 habitats all over the study area.

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270

271 Data analyses

272 1) Growth and malformation rate in hatchery conditions

273 The body size at 80 days after hatching in each tank was compared among 1st, 2nd

274 and the 3rd and more generations in captivity using Mann-Whitney's U test. The

275 frequencies of malformed individuals were compared between two cohorts in each year

276 using Fisher's exact tests.

277 2) Survival, migration behaviour, and vulnerability to angling in a field experiment

278 Firstly, to evaluate the performance in the natural stream after stocking, survival,

279 migration behaviour, and vulnerability to angling were compared between two cohorts

280 each year using G-tests. We used a DraftBonferroni correction of the p values to account for

281 a total of 12 G-tests that were conducted (Demšar 2006). The number of individuals

282 caught by the casting net was used as an index of survival. The vulnerability to angling

283 was evaluated by comparing the number of individuals caught by angling and casting

284 nets, respectively, among cohorts. Migration behaviour was evaluated by the recapture

285 points where ayu were caught by casting nets (up- or downstream from the stocking

286 points) because juvenile ayu migrate upstream into the river from the coastal littoral

287 zone in their natural life cycle (Nishida 1986).

288 3) Angling catch-per-unit effort (CPUE) in the field experiment

289 Using all data collected over four years of angling experiments, a generalized linear

290 mixed model (GLMM) with a Poisson error distribution was used. This model is

291 follows as

292

2 293 f(Catch) = β0 + β1 Generation + β2 (Generation) +β3 Point + β4 Date + log (Effort) +

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294 αi(j) + δj

2 295 αi(j) ~ Normal (0, 휎훼 )

2 296 δj ~ Normal (0, 휎훿 ),

297

298 where f is log function. Catch is the number of individuals caught by angling.

299 Generation is the number of generations in captivity assumed as continuous variable.

300 Square of the number of generations in captivity was used to test for non-linear effects.

301 Point is recapture point (upstream from stocking point = 1, downstream = 0). Date is the

302 number of days from 1st June (stocking date), which is normalized to a mean of 0 and a

303 standard deviation of 1. Effort is angling effort (h), which was used as offset term. αi(j) is

304 a random effect of cohort (brood lines)Draft i of data ID j; i = A; 5th, 6th, 7th, 8th, i = B; 9th,

305 i = C; 1st, 2nd, 3rd generations in captivity. Since overdispersion was recognized in a

306 preliminary data analysis, a random effect of individual data was included in the model.

307 δj is random effect of individual data ID; j=1, 2, 3, ..., N, where N is sample size (164).

308 To clarify the trade-off of the number of generations in captivity on angling CPUE, we

309 calculated generation effect which is as follows,

310

2 311 Generation effect = β1 Generation + β2 (Generation)

312

313 95% confidence intervals of the generation effects were estimated using nonparametric

314 bootstrap method (bootstrap sample size is same as data sample size; bootstrap sample

315 was generated as 5,000 times).

316 4) Vulnerability to angling in the field experiment

317 Note that CPUE data integrate both abundance and vulnerability to angling and thus

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318 are not a clean measure of vulnerability to the gear. Instead, a generalized linear mixed

319 model (GLMM) with a binomial error distribution was used to compare the probability

320 of being caught by angling (i.e., recapture probability of an individual by angling

321 relative to an angling-independent fish availability estimate using casting nets) across

322 the number of generations in captivity assumed as continuous variable. This model is

323 follows as

324

2 325 f(Angling prob) = β0 + β1 Generation + β2 (Generation) +β3 Length +β4 Date

326 + β5 Point + αi(j)

2 327 αi(j) ~ Normal (0, 휎훼 ),

328 Draft

329 where f is logit function. Angling prob expresses the probability of being caught by

330 angling (not by casting nets). Length is total length (mm) at recapture. Both Length and

331 Date were normalized to a mean of 0 and SD of 1. αi(j) is a random effect of cohort

332 (brood lines) i of data ID j; i = A; 5th, 6th, 7th, 8th, i = B; 9th, i = C; 1st, 2nd, 3rd

333 generations in captivity. As with the angling CPUE model, the generation effects and

334 confidence interval were calculated.

335 All analyses were conducted using the R machinery (version 3.3.2). The Akaike

336 information criterion (AIC) was used to identify the best-fitting models comparing all

337 possible subsets of main effects for all GLMM analyses.

338

339 Results

340 Over four years, two cohorts of ayu were cultured each year ranging from the first to

341 the ninth generation held in captivity, except for the fourth generation where no data

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342 were available (Table 1). Despite the identical culture conditions, the cohorts of the 1st

343 and 2nd generations in captivity revealed a smaller body size than those of the third and

344 more generations 80 days after hatching (Mann–Whitney U test, n = 21, p = 0.024, Fig.

345 3). The 1st generation also showed the highest malformation rates, which were

346 significantly higher than those of the 6th generation in 2011 (Fisher's exact test, p =

347 0.023, Table 1). In other study years, no significant differences in size at day 80 and

348 malformation rates was detected among cohorts (p = 0.695 in 2010, p = 0.079 in 2012, p

349 = 1.000 in 2013, Table 1).

350 After stocking hatchery-reared ayu into a natural stream, a total of 422 and 840

351 individuals were recaptured by angling (Fig. 1) and casting nets, respectively,

352 throughout the four-year experimentDraft (Tables 2, 3). Ayu recaptured by angling were

353 larger than those recaptured by casting nets (angling; 176 ± 27.1 mm, casting net; 149 ±

354 28.6 mm, mean fork length ± SD, F = 260.6, p < 0.001). In 2010, the cohorts of the 9th

355 generation in captivity showed significantly lower survival than those of the 5th

356 generation (G-test, p = 0.024, Table 3a). Similarly, the 1st generation in 2011 revealed

357 lower survival than those of the 6th generation. Moreover, the 1st generation fish were

358 less vulnerable to angling relative to the 6th generation offspring (Table 3b), indicating

359 less pronounced territorial behaviour during foraging of the 1st generation offspring

360 relative to the 6th generation offspring. Although only marginally significant, the

361 upstream migration behaviour of the 2nd and 3rd generations were more pronounced

362 than that shown by fish of the 7th and 8th generations in 2012 and 2013, respectively

363 (Table 3c). The cohort of the 3rd generation in 2013 were also more vulnerable to

364 angling relative to fish from the 8th generation.

365 Based on the AIC, both the number of generations in captivity and the square of the

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366 number of generations in captivity were selected as best model of angling CPUE (N /

367 person hour) based on territorial behaviour throughout the four-year hatchery rearing

368 and angling experiments (Table 4). The estimated generation effect (linear and quadratic

369 effects of the number of generations in captivity) on angling CPUEs exhibited a

370 dome-shape curve where intermediate generations held in captivity (i.e., generation 5)

371 exhibited a relatively higher coefficient of angling CPUE compared to other generations

372 (Fig. 4). Accordingly, ayu cultured in the 1st and 9th generations in captivity showed

373 substantially lower fisheries potential as a stocking cohort for recreational angling:

374 while the 1st generation fish were poor performers in the wild, the 9th generation fish

375 performed even less well, thereby strongly reducing abundance through mortality and

376 hence penalizing catch rates by angling.Draft

377 We also performed an analysis explicitly modelling the vulnerability to angling

378 independent of abundance using individual-level capture data based on angling

379 compared to casting nets. Based on the AIC, the full model was identified as best model

380 (Table 5). Accordingly, larger individuals were much more vulnerable to angling than

381 smaller ones (Fig. S1). We also detected a negative impact of season on vulnerability.

382 This can be explained by the fact the vulnerability to angling in ayu is strongly size

383 dependent and fish growth very fast. Thus, a say, 180 mm fish in June is among the

384 fast-growing fish, while the same sized fish in September is a slow-growing fish. Then,

385 all else being equal (including length of fish), season exerts a negative impact on

386 vulnerability (Fig. S1). The individuals recaptured in upstream sections from the

387 stocking point were also caught by angling more frequently compared to the fishes

388 caught by the casting net (Table 5). The 3rd generation held in captivity exhibited a

389 relatively higher coefficient of vulnerability (Fig. 5). Accordingly, ayu cultured in 8th

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390 and 9th generations in captivity showed substantially lower vulnerability to angling.

391

392 Discussion

393

394 Trade-offs in hatchery and natural selection

395 Our results showed that hatchery selection creates trade-offs in ayu performance in

396 the wild. We found the return to the catch was both low when fish were initially

397 adapting to the hatchery environment and when they were domesticated long term, with

398 intermediate generations performing better when judged from a fisheries perspective.

399 Thus, long domestication results in a penalty to catchability. The reason relates to

400 domestication effects both on naturalDraft fitness components (survival, migration) and the

401 pattern by which the ayu forage and are captured using an aggression mechanism, as

402 will be elaborated below.

403 We found both early generations, particularly the first generation held in captivity,

404 and late generations exhibiting lower survival in nature and reduced return to catch after

405 stocking into a natural stream relative to intermediate generations. The 1st generation in

406 captivity was challenged by the novel hatchery environment to which the fish were not

407 previously exposed. They in turn showed weak growth at the larval stages in the

408 hatchery and high malformation rates as indicator of poor performance. However, the

409 growth rate in the hatchery improved after 3rd generations held in captivity, suggesting

410 ayu responded to selection and adapted to hatchery conditions within a few generations.

411 Such pattern of rapid adaptation (“contemporary evolution”) is in agreement with a

412 large body of research in salmonids (Huntingford 2004; Huntingford and Adams 2005;

413 Waples and Hendry 2008; Christie et al. 2016).

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414 The first generation struggled in captivity. This generation did not easily adapt to

415 forage on formulated diet, particularly just after hatching, consequently the

416 malformation rate was significantly greater in the 1st compared to the 6th generation

417 fish in the same study year, and the growth rates were substantially smaller. These

418 results have been found in other wild fish when initially adapting to hatchery conditions

419 (e.g., Eknath et al. 1993; Gjedrem 2000; Härkönen et al. 2017). Supporting our results,

420 Kaji (2016) reported the first generation of ayu had also much higher malformation rate

421 (71.2 %) than those of the 5th generation held in captivity (1.3 %), and work by

422 Kataoka and Suzuki (2007) showed that individuals of ayu that initially were slow

423 growers were much more difficult to angle than initially fast growing fishes, despite a

424 uniform size at the time of stockingDraft into the wild. A major limitation of our study is the

425 lack of replication in the number of generations in captivity, and hence we cannot

426 conclusively relate our study findings to domestication in a cause-and-effect or

427 evolutionary manner.

428

429 Negative effect of high rearing density

430 The rearing density (400-500 individuals / m2) in the hatchery setting was much

431 higher than the densities typically reported in the wild (c. 2 individuals / m2; Katano

432 2014). These dramatic differences in density (Jørgensen et al. 1993), together with the

433 control of diseases and parasites in the hatchery environment and the circumvention of

434 sexual selection (Thériault et al. 2011) are candidate factors involved in rapid hatchery

435 selection, particularly in the 1st and 2nd generation. High density and simplified

436 physical environments are known to cause loss of territorial behaviour in dominance

437 hierarchies in salmonids (Hasegawa and Yamamoto 2008, 2010; Warnock and

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438 Rasmussen 2013), and thus likely affected the hatchery selection in ayu because the cost

439 of territory was likely too high when foraging on formulated diets exclusively in large

440 densities (compare also work in salmonids and pike, Esox lucius, Brockmark and

441 Johnsson 2010; Hühn et al. 2014). As a result, the generation effect on vulnerability to

442 angling started to be decreased at earlier generation (i.e., 3rd generation) relative to the

443 generation effect on angling CPUE that started to decline only by the 7th generation.

444 The 1st generation in captivity may also have suffered substantial stress induced by the

445 high density and non-natural food, and in turn their juvenile growth curve was steeply

446 depressed compared to further generations. The high rearing density is known to

447 suppress the development of the thymus, which administers disease resistance in ayu

448 (Iguchi et al. 2003; Miwa et al. 2003).Draft By contrast, substantially lower densities (20 %

449 of the usual hatchery density) has been shown to enable adaptation of the 1st generation

450 of ayu successfully, which led to the same survival rates and angling vulnerabilities

451 compared to fish from the 2nd generation in other studies (Yogo 2010; Moriyama

452 2013). Density reduction alone has been found to strongly alter the survival rate of

453 fishes when released from hatcheries into the wild (Brockmark and Johnsson 2010;

454 Larsen et al. 2016), suggesting that density and related stressors maybe among the most

455 important selective pressures in the adaptation from the wild to hatcheries.

456

457 Long-term domestication impacts on behavioural patterns

458 With increasing generation time, we found long-term domesticated ayu to become

459 less vulnerable to angling (particularly in the 7th - 9th generation). Long domestication

460 reduced the natural migration patterns upstream after stocking, suggesting difficulties to

461 adapt to natural environments because upstream migration is the natural behavioural

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462 pattern in this species. Long term domestication is known to reduce the swimming

463 performance in salmonids (Reinbold et al. 2009; Bellinger et al. 2014), which might

464 have played a role in explaining our findings. In hatchery environments, ayu have also

465 been found to sacrifice natural territorial behaviour to achieve higher growth rate and

466 stress tolerance (Awata et al. 2011). A reduction in territorial behaviour comes along

467 with the difficulty of defending natural territories using benthic algae thriving on rocky

468 substrates, and given the way ayu altered territorial behaviour it must penalize catch

469 rates. Less territorial fishes might suffer from lower fitness, due to a lower rank in a

470 dominance hierarchy (Nakano 1995) and lower defense capacity for spawning nests

471 (Sutter et al. 2012). A decrease in fitness in the wild is well known in salmonids with

472 increasing number of generations inDraft captivity (Araki et al. 2008), which we also found

473 in ayu. Importantly, however, these patterns are not a linear function of generation time

474 because we found a dome-shaped relationship of generation time and performance in

475 nature and in relation to ayu fishing. Supporting our findings, low-inbred strains (4th to

476 6th generations in captivity) of ayu were previously found to exhibit higher survival rate

477 and greater vulnerability to angling than high-inbred strains (13th to 15th) (Yoneyama

478 et al. 1997).

479 After stocking, the 7th and 8th generations held in captivity were significantly less

480 frequently migrating upstream relative to the 2nd and 3rd generations. Upstream

481 migration behaviour is natural in the life cycle of ayu, which is characterized by

482 migration from coastal sites up the rivers in spring (Nishida 1986). The degree of

483 upstream migration is also correlated with the vulnerability to angling in ayu

484 (Tsukamoto et al. 1990a, b), which was also shown in the present work. However,

485 hatchery-reared ayu were found to more often migrate downstream relative to wild

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486 individuals after stocking (Tsukamoto et al. 1990a, b), and similarly migratory

487 behaviour in salmonids have been found to be different from the behaviour of wild fish

488 (e.g., Jonsson et al. 1991; Finstad et al. 2005; Kostow 2009). Swimming performance

489 and migration are very important in the natural foraging of benthic algae, which are

490 more abundant in high velocity upstream sites with sufficient oxygen. High velocity

491 riffles are suitable habitat to form exclusive territories (Katano and Iguchi 1996), and

492 upstream sites were accordingly found to lead to higher vulnerability to angling in the

493 present work. The reduced swimming performance and altered migratory behaviour

494 upstream, the higher mortality and possibly the reduction of general aggressiveness are

495 good candidates why high levels of domestication reduced vulnerability of ayu to

496 angling based on territorial behaviour.Draft

497

498 Conclusions and management implications

499 In conclusion, both unintentional domestication selection and relaxation of natural

500 selection, due to artificially modified and high density rearing environments, are

501 occurring in hatcheries of ayu. Initial challenges to adapt to the hatchery environment

502 reduces health and in turn reduces performance after stocking, penalizing vulnerability

503 to fishing. As domestication proceeds to multiple generations, fish become well adapted

504 to the artificial environments but loose behavioural patterns (upstream migration,

505 territorial behaviour) that are key for both natural fitness and for ayu being captured

506 using the peculiar fishing method based on agonistic interactions. Therefore, our study

507 challenges the commonly expressed belief that increasing domestication selection

508 increases catchability by promoting boldness and growth (Lorenzen et al. 2012). Instead

509 our work suggests that there is a middle ground in terms of number of generation in

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510 captivity where the vulnerability to angling, survival post stocking and thus abundance

511 and population-level catchability are maximized in ayu. At the same time, each

512 generation in captivity seem to render the fish increasingly well adapted to the artificial

513 environment, which pays large costs for natural fitness, particularly in terms of

514 reproductive fitness (Araki et al. 2007). Management using domesticated fishes thus

515 seems to be mainly providing benefits to fisheries in terms of rapid recapture following

516 put-and-take type of fisheries (Lorenzen et al. 2012), and ayu seems no exception. The

517 contribution of strongly domesticated hatchery fish to supporting wild fish conservation,

518 however, is doubtful (Araki et al. 2007; Lorenzen et al. 2012; Glover et al. 2017) and

519 should be studied in future work. As a possible future direction, gene flow from wild

520 fish could restore fitness of later generationsDraft of hatchery fish. Indeed, the hybrid ayu

521 between hatchery female and wild male has shown intermediate susceptibility to

522 bacterial coldwater disease in between hatchery and wild fish (Nagai and Sakamoto

523 2006). Before such work becomes available, we suggest to stock, where considered

524 necessary, intermediate generation-time-ayu of genotypes most similar to the wild

525 stocks, being cognizant that this type of management most likely creates and supports a

526 socially valued put-and-take type fishery.

527

528

529 Acknowledgements

530 We thank Kouji Hada, Youji Omori, Kenji Yoshino, Masayuki Miura, Akihiko

531 Ashizawa, Takumi Okazaki, Shoko Amano and the staff at Yamanashi Prefectural

532 Fisheries Technology Center for culturing fish, stocking, and angling experiment

533 throughout the study and reviewers for feedback. Funding was provided by JSPS

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534 KAKENHI Grant Numbers JP21925006 (J.T.).

535 536

Draft

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721 Mezzera, M., and Largiadèr, C.R. 2001. Evidence for selective angling of introduced

722 trout and their hybrids in a stocked brown trout population. J. Fish Biol. 59(2):

723 287–301. doi: 10.1111/j.1095-8649.2001.tb00130.x.

724 Miller, L.M., Close, T., and Kapuscinski, A.R. 2004. Lower fitness of hatchery and

725 hybrid rainbow trout compared to naturalized populations in Lake Superior

726 tributaries. Mol. Ecol. 13(11), 3379–3388. doi:

727 10.1111/j.1365-294X.2004.02347.x.

728 Miura, M., Tsuboi, J., Okazaki, T., Oohama, H., and Ashizawa, A. 2012. Assessment of

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729 the characteristic traits of hatchery-reared ayu as a recreational fishing target:

730 comparison of two breeds subcultured under identical conditions. Nippon Suisan

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732 Miwa, S., Sakai, A., and Nakane, M. 2003. Impairment of thymus development in

733 cultured osmerid fish, the ayu, Plecoglossus altivelis. Aquaculture 221: 535–548.

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736 seedlings via analysis of schooling and fishing trials. J. Fish. Tech. 6(1): 39–43.

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739 Nagai, T., and Sakamoto, T. 2006. SusceptibilityDraft and immune response to

740 Flavobacterium psychrophilum between different stocks of ayu Plecoglossus

741 altivelis. Fish Pathol. 41(3): 99–104. doi:10.3147/jsfp.41.99.

742 Nakano, S. 1995. Individual differences in resource use, growth and emigration under

743 the influence of a dominance hierarchy in fluvial red-spotted masu salmon in a

744 natural habitat. J. Anim. Ecol. 64(1): 75–84. doi: 10.2307/5828.

745 Nishida, M. 1986. Geographic variation in the molecular, morphological and

746 reproductive characters of the ayu Plecoglossus altivelis (Plecoglossidae) in the

747 Japan-Ryukyu archipelago. Jap. J. Ichthyol. 33(3): 232–248. doi:

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750 and increased growth in domesticated rainbowtrout, Oncorhynchus mykiss. Can. J.

751 Fish. Aquat. Sci. 66(7), 1025–1032. doi:10.1139/F09-064.

752 Ruzzante, D. 1994. Domestication effects on aggressive and schooling behavior in fish.

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754 Sakae, K., Umino, T., Takahara, Y., Arai, K., and Nakagawa, H. 1996. Biological and

755 biochemical characteristics of yearling ayu in the Ohta River of Hiroshima

756 Prefecture. Nippon Suisan Gakkaishi 62(1): 46–50. doi: 10.2331/suisan.54.1107.

757 Sato, M., and Tsuboi, J. 2018. Stocking effectiveness of ayu Plecoglossus altivelis

758 during the early season, in a tributary of the Yoneshiro River Basin. Aquacult.

759 Sci. 66(3): 227–233.

760 Sutter, D.A.H., Suski, C.D., Philipp, D.P., Klefoth, T., Wahl, D.H., Kersten, P.,

761 Cooke,S.J., and Arlinghaus, R. 2012. Recreational fishing selectively captures

762 individuals with the highest fitness potential. Proc. Natl. Acad. Sci. U.S.A.

763 109(51): 20960–20965. doi:10.1073/pnas.1212536109.Draft

764 Tachihara, K., and Kimura, S. 1988. Some notes on the over-wintered ayu Plecoglossus

765 altivelis in Lake Ikeda, Kagoshima Prefecture. Nippon Suisan Gakkaishi 54(7):

766 1107–1113. doi: 10.2331/suisan.54.1107.

767 Teletchea, F., and Fontaine, P. 2014. Levels of domestication in fish: implications for

768 the sustainable future of aquaculture. Fish Fish. 15(2): 181–195. doi:

769 10.1111/faf.12006.

770 Thériault, V., Moyer, G.R., Jackson, L.S., Blouin, M.S., and Banks, M.A. 2011.

771 Reduced reproductive success of hatchery coho salmon in the wild: insights into

772 most likely mechanisms. Mol. Ecol. 20(9): 1860–1869. doi:

773 10.1111/j.1365-294X.2011.05058.x.

774 Tsuboi, J., Morita, K., Klefoth, T., Endou, S., and Arlinghaus, R. 2016.

775 Behaviour-mediated alteration of positively size-dependent vulnerability to

776 angling in response to historical fishing pressure in a freshwater salmonid. Can. J.

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777 Fish. Aquat. Sci. 73(3): 461–468. doi: 10.1139/cjfas-2014-0571.

778 Tsukamoto, K., Masuda, S., Endo, M., and Ishida, R. 1990a. Influence of fish stocks on

779 the recapture rate of ayu released in the River Tsubusa. Nippon Suisan Gakkaishi

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781 Tsukamoto, K., Masuda, S., Endo, M., Otake, T. 1990b. Behavioural characteristics of

782 the ayu, Plecoglossus altivelis, as predictive indices for stocking effectiveness in

783 Rivers. Nippon Suisan Gakkaishi 56(8): 1177–1186. doi: 10.2331/suisan.56.1177.

784 Uchida, K., Iguchi, K., and Kiso, K. 1995. Effects of water temperature on aggressive

785 behaviour of the territorial ayu Plecoglossus altivelis in Aquaria. Bull. Natl. Res.

786 Inst. Fish. Sci. 7: 389–401.

787 Uusi-Heikkilä, S., Sävilammi, T., Leder,Draft E., Arlinghaus, R., and Primmer, C.R. 2017.

788 Rapid, broad-scale gene expression evolution in experimentally harvested fish

789 populations. Mol. Ecol. 26(15): 3954–3967. doi: 10.1111/mec.14179.

790 Waples, R.S., and Hendry, A.P. 2008. Special Issue: Evolutionary perspectives on

791 salmonid conservation and management. Evol. Appl. 1: 183–188. doi:

792 10.1111/j.1752-4571.2008.00035.x.

793 Warnock, W.G., and Rasmussen J.B. 2013. Assessing the effects of fish density, habitat

794 complexity, and current velocity on interference competition between bull trout

795 (Salvelinus confluentus) and brook trout (Salvelinus fontinalis) in an artificial

796 stream. Can. J. Zool. 91(9): 619–625. doi: 10.1139/cjz-2013-0044.

797 Wilson, A.D.M., Brownscombe, J.W., Sullivan, B., Jain-Schlaepfer. S., and Cooke, S.J.

798 2015. Does angling technique selectively target fishes based on their behavioural

799 type? Plos One 10(8): e0135848. doi: 10.1371/journal.pone.0135848.

800 Yogo, S. 2010. Production of ayu larvae having wild nature of fish for stock

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801 enhancement. Nippon Suisan Gakkaishi 76(3): 417–418. doi:

802 10.2331/suisan.76.417.

803 Yoneyama, Y., Hosoya, H., Otsuka, O., Fujita, T., Hoshino, M., and Sato, Y. 1997.

804 Stocking effectiveness of hatchery reared ayu in the Umikawa River with special

805 reference to generation differences. Rep. Niigata Inland Fish. Exp. St. 22: 25–33.

806 Yoshiura, Y., Kamaishi, T., Nakayasu, C., and Ototake, M. 2006. Detection and

807 Genotyping of Flavobacterium psychrophilum by PCR targeted to Peptidyl-prolyl

808 cis-trans isomerase C Gene. Fish Pathol. 41(2): 67–71. doi: 10.3147/jsfp.41.67.

809 Yoshizawa, K. 2003. Inbreeding in hatchery populations of ayu cultured for multiple

810 generations as inferred from allozyme analysis. Rep. Gunma Fish. Exp. St. 9: 67–

811 78. Draft

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812 Table 1 Survival rate for 90 days between hatching to sorting and malformation rate in

813 ayu culturing between 2009 and 2013. Each study year, two cohorts (brood lines) of

814 ayu, which constituted different numbers of generations held in captivity, were

815 produced. A total of three cohorts were produced over four years, A; 5th, 6th, 7th, 8th,

816 B; 9th, C; 1st, 2nd, 3rd generations in captivity.

817

Year 2009-2010 2010-2011 2011-2012 2012-2013

Cohort (brood line) A B C A C A C A

Number of generations 5th 9th 1st 6th 2nd 7th 3rd 8th of ayu in captivity

Estimated number of hatched individuals Draft 2,569,000 2,463,000 1,192,000 4,205,000 1,502,000 4,629,000 1,984,000 2,259,000 (0.9 × estimated N of eyed eggs)

Estimated number of 839,000 701,000 153,000 448,000 670,000 722,000 723,000 700,000 individuals at sorting

Survival rate 32.7 28.5 12.8 10.7 44.6 15.6 36.4 31.0 from hatching to sorting (%)

Malformation rate just before stocking (%) 3.8 5.8 9.5 1.6 2.7 0 0 0 (N of malformed fish / (12 / 313) (15 / 313) (4 / 42) (3 / 185) (3 / 111) (0 / 146) (0 / 170) (0 / 180) N of sampled fish) 818

819 820 821

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822 Table 2 Summary of stocking and angling experiment between 2010 and 2013. 823 Asterisks show group marking by adipose fin clipping. 824

Year 2010 2011 2012 2013

Cohort (brood line) A B C A C A C A

Number of generations 5th 9th * 1st * 6th 2nd * 7th 3rd 8th * of ayu in captivity

Mean body weight 14.3 14.3 11.3 13.4 13.2 13.5 12.5 12.1 at stocking (g)

Date of marking 2010/6/3 2011/5/30 2012/5/7 2013/5/21

Date of stocking 2010/6/4 2011/6/7 2012/5/28 2013/5/29

Period of 2010/6/26 ‒ 9/22 2011/7/1 ‒ 9/13 2012/6/15 ‒ 9/20 2013/6/16 ‒ 10/2 angling experiment Draft Total angling effort (h) 68.9 30.5 71.3 33.5

Date of 2010/7/27, 8/6 2011/6/29, 8/9 2012/6/14, 8/10 2013/6/11, 8/21 casting-net fishing 825 826 827

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828 Table 3 Summary of G-tests of the number of individuals in single year comparison

829 between two cohorts for the index of survival (the number of individuals stocking and

830 recaptured by casting net), the vulnerability to angling (recaptured by angling and by

831 casting net), and the migration trends (recaptured by casting net at up- and downstream

832 section from stocking point). The p values were Bonferroni-corrected to account for12

833 G-tests.

834

a) Index of suvival Year 2010 2011 2012 2013 Number of generations 5th 9th 1st 6th 2nd 7th 3rd 8th in captivity Draft Stocking 10,000 10,000 10,000 10,000 10,000 10,000 7,515 8,082

Caught by 74 41 76 129 115 130 130 145 casting net p = 0.024 p = 0.003 p = 1.000 p = 1.000 b) Vulnerability to angling Caught by 63 43 13 55 63 98 59 28 angling Caught by 74 41 76 129 115 130 130 145 casting net p = 1.000 p = 0.060 p = 1.000 p = 0.009 c) Migration after stocking

Upstream 8 6 11 12 57 42 82 69

Downstream 66 35 65 117 58 88 48 76

p = 1.000 p = 1.000 p = 0.072 p = 0.120 835

836

837

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838 Table 4 The best model of a generalized linear mixed model (GLMM) selected by 839 Akaike information criteria (AIC) in a field experiment on the catch per unit effort by 840 angling of ayu reared several generations in captivity. 841 Dependent Error Independent AIC ∆ AIC Coefficient χ 2 p variable distribution variable Number of Poisson 666.9 0.8 Number of 0.530 11.737 < 0.001 individuals generations caught by in captivity angling Square of the -0.052 12.580 < 0.001 number of generations in captivity

Recapture point 0.279 2.852 0.091

Intercept -1.339 842 843 Draft 844 Note: The independent variables were Number of generations in captivity, Square of the 845 number of generations in captivity, Date (number of days from 1st June), and Recapture 846 point (upstream from stocking point = 1, downstream = 0). Angling effort (h) was the 847 offset term in the model. Random effects were cohort (brood lines: A; 5th, 6th, 7th, 8th, 848 B; 9th, C; 1st, 2nd, 3rd generations in captivity, n = 3, variance = 0.000, SD = 0.000) 849 and individual data ID (n = 164, variance = 0.492, SD = 0.702). ∆AIC shows the 850 difference of AIC between the best and full models.

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851 Table 5 The best and full model of a generalized linear mixed model (GLMM) selected 852 by Akaike information criteria (AIC) in a field experiment on the vulnerability to 853 angling of ayu reared several generations in captivity 854

Dependent Error Independent AIC ∆ AIC Coefficient χ 2 p variable distribution variable Caught by Binomial 1279.9 1.1 Number of 0.439 2.991 0.084 angling (1) or generations casting net (0) in captivity Square of the -0.074 11.396 < 0.001 number of generations in captivity

TL 1.133 83.927 < 0.001 Date -0.370 10.399 0.001 DraftRecapture point 1.384 68.652 < 0.001 Intercept -0.710 855 856 857 858 Note: The independent variables were Number of generations in captivity, Square of the 859 number of generations in captivity, TL (total length at recapture), Date (number of days 860 from 1st June), and Recapture point (upstream from stocking point = 1, downstream = 861 0). Random effect was cohort (brood lines: A; 5th, 6th, 7th, 8th, B; 9th, C; 1st, 2nd, 3rd 862 generations in captivity, n = 3, variance = 2.158, SD = 1.469). ∆AIC shows the 863 difference of AIC between the best and second models. 864

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865 Figure captions 866 867 Fig. 1. Schematic representation of the typical ayu angling, using live ayu as a subject 868 of agonistic behaviour for wild individuals which have foraging territory. 869 870 871 Fig. 2. Map showing locations of study reach. Three weirs prevent upstream migration 872 of ayu in the study area. 873 874 875 Fig. 3. Body weights of ayu until 80 days after hatching in different numbers of 876 generations in captivity. Error bars indicate standard deviation. Growth curve of first 877 generation of ayu are without SD, because there was only one pond caused by few 878 number of mature individuals of wild fish under hatchery condition in 2010. 879 880 Draft 881 Fig. 4. Estimated generation effect (0.530 * Generation – 0.052 * (Generation) 2) on 882 catch per unit effort (N / person hour) by angling using territorial behaviour for a total 883 of 82 days throughout four years stocking and recapture experiments in a natural stream 884 on ayu (see Table 4). Bold line shows median values. Grey buffer indicates 95% 885 confidence interval estimated by non-parametric bootstrap method. 886 887 888 Fig. 5. Estimated generation effect (0.439 * Generation – 0.074 * (Generation) 2) on the 889 probability of being caught by angling throughout four years stocking and recapture 890 experiments in a natural stream on ayu (see Table 5). Bold line shows median values. 891 Grey buffer indicates 95% confidence interval estimated by non-parametric bootstrap 892 method. 893 894 895

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896 Figure 1 897

Draft

898 899

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900 Figure 2 901

N36°

E139°

Stocking point of hatchery reared ayu Study area

Draft

100m 902

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903 Figure 3 904

350 2009-2010 Fifth 8th 300 2009-2010 Ninth 2010-2011 First 2010-2011 Sixth 250

) 2011-2012 Second 9th g

m 2011-2012 Seventh 3rd (

t 200

h 2012-2013 Third

g 6th i

e 2012-2013 Eighth 7th w 150 5th y d o B 100 1st 2nd 50 Draft

0 0 10 20 30 40 50 60 70 80 Days after hatching

905

906 907 908

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909 Figure 4 910 911

Draft

912 913 914 915 916

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917 Figure 5 918

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919 920 921 922

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