The Value of Ascospore Septation in Separating Mycosphaerella from Sphaerulina in the Dothideales: a Saccardoan Myth ?
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Development and Evaluation of Rrna Targeted in Situ Probes and Phylogenetic Relationships of Freshwater Fungi
Development and evaluation of rRNA targeted in situ probes and phylogenetic relationships of freshwater fungi vorgelegt von Diplom-Biologin Christiane Baschien aus Berlin Von der Fakultät III - Prozesswissenschaften der Technischen Universität Berlin zur Erlangung des akademischen Grades Doktorin der Naturwissenschaften - Dr. rer. nat. - genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. sc. techn. Lutz-Günter Fleischer Berichter: Prof. Dr. rer. nat. Ulrich Szewzyk Berichter: Prof. Dr. rer. nat. Felix Bärlocher Berichter: Dr. habil. Werner Manz Tag der wissenschaftlichen Aussprache: 19.05.2003 Berlin 2003 D83 Table of contents INTRODUCTION ..................................................................................................................................... 1 MATERIAL AND METHODS .................................................................................................................. 8 1. Used organisms ............................................................................................................................. 8 2. Media, culture conditions, maintenance of cultures and harvest procedure.................................. 9 2.1. Culture media........................................................................................................................... 9 2.2. Culture conditions .................................................................................................................. 10 2.3. Maintenance of cultures.........................................................................................................10 -
Based on a Newly-Discovered Species
A peer-reviewed open-access journal MycoKeys 76: 1–16 (2020) doi: 10.3897/mycokeys.76.58628 RESEARCH ARTICLE https://mycokeys.pensoft.net Launched to accelerate biodiversity research The insights into the evolutionary history of Translucidithyrium: based on a newly-discovered species Xinhao Li1, Hai-Xia Wu1, Jinchen Li1, Hang Chen1, Wei Wang1 1 International Fungal Research and Development Centre, The Research Institute of Resource Insects, Chinese Academy of Forestry, Kunming 650224, China Corresponding author: Hai-Xia Wu ([email protected], [email protected]) Academic editor: N. Wijayawardene | Received 15 September 2020 | Accepted 25 November 2020 | Published 17 December 2020 Citation: Li X, Wu H-X, Li J, Chen H, Wang W (2020) The insights into the evolutionary history of Translucidithyrium: based on a newly-discovered species. MycoKeys 76: 1–16. https://doi.org/10.3897/mycokeys.76.58628 Abstract During the field studies, aTranslucidithyrium -like taxon was collected in Xishuangbanna of Yunnan Province, during an investigation into the diversity of microfungi in the southwest of China. Morpho- logical observations and phylogenetic analysis of combined LSU and ITS sequences revealed that the new taxon is a member of the genus Translucidithyrium and it is distinct from other species. Therefore, Translucidithyrium chinense sp. nov. is introduced here. The Maximum Clade Credibility (MCC) tree from LSU rDNA of Translucidithyrium and related species indicated the divergence time of existing and new species of Translucidithyrium was crown age at 16 (4–33) Mya. Combining the estimated diver- gence time, paleoecology and plate tectonic movements with the corresponding geological time scale, we proposed a hypothesis that the speciation (estimated divergence time) of T. -
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016
Old Woman Creek National Estuarine Research Reserve Management Plan 2011-2016 April 1981 Revised, May 1982 2nd revision, April 1983 3rd revision, December 1999 4th revision, May 2011 Prepared for U.S. Department of Commerce Ohio Department of Natural Resources National Oceanic and Atmospheric Administration Division of Wildlife Office of Ocean and Coastal Resource Management 2045 Morse Road, Bldg. G Estuarine Reserves Division Columbus, Ohio 1305 East West Highway 43229-6693 Silver Spring, MD 20910 This management plan has been developed in accordance with NOAA regulations, including all provisions for public involvement. It is consistent with the congressional intent of Section 315 of the Coastal Zone Management Act of 1972, as amended, and the provisions of the Ohio Coastal Management Program. OWC NERR Management Plan, 2011 - 2016 Acknowledgements This management plan was prepared by the staff and Advisory Council of the Old Woman Creek National Estuarine Research Reserve (OWC NERR), in collaboration with the Ohio Department of Natural Resources-Division of Wildlife. Participants in the planning process included: Manager, Frank Lopez; Research Coordinator, Dr. David Klarer; Coastal Training Program Coordinator, Heather Elmer; Education Coordinator, Ann Keefe; Education Specialist Phoebe Van Zoest; and Office Assistant, Gloria Pasterak. Other Reserve staff including Dick Boyer and Marje Bernhardt contributed their expertise to numerous planning meetings. The Reserve is grateful for the input and recommendations provided by members of the Old Woman Creek NERR Advisory Council. The Reserve is appreciative of the review, guidance, and council of Division of Wildlife Executive Administrator Dave Scott and the mapping expertise of Keith Lott and the late Steve Barry. -
Molecular Systematics of the Marine Dothideomycetes
available online at www.studiesinmycology.org StudieS in Mycology 64: 155–173. 2009. doi:10.3114/sim.2009.64.09 Molecular systematics of the marine Dothideomycetes S. Suetrong1, 2, C.L. Schoch3, J.W. Spatafora4, J. Kohlmeyer5, B. Volkmann-Kohlmeyer5, J. Sakayaroj2, S. Phongpaichit1, K. Tanaka6, K. Hirayama6 and E.B.G. Jones2* 1Department of Microbiology, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla, 90112, Thailand; 2Bioresources Technology Unit, National Center for Genetic Engineering and Biotechnology (BIOTEC), 113 Thailand Science Park, Paholyothin Road, Khlong 1, Khlong Luang, Pathum Thani, 12120, Thailand; 3National Center for Biothechnology Information, National Library of Medicine, National Institutes of Health, 45 Center Drive, MSC 6510, Bethesda, Maryland 20892-6510, U.S.A.; 4Department of Botany and Plant Pathology, Oregon State University, Corvallis, Oregon, 97331, U.S.A.; 5Institute of Marine Sciences, University of North Carolina at Chapel Hill, Morehead City, North Carolina 28557, U.S.A.; 6Faculty of Agriculture & Life Sciences, Hirosaki University, Bunkyo-cho 3, Hirosaki, Aomori 036-8561, Japan *Correspondence: E.B. Gareth Jones, [email protected] Abstract: Phylogenetic analyses of four nuclear genes, namely the large and small subunits of the nuclear ribosomal RNA, transcription elongation factor 1-alpha and the second largest RNA polymerase II subunit, established that the ecological group of marine bitunicate ascomycetes has representatives in the orders Capnodiales, Hysteriales, Jahnulales, Mytilinidiales, Patellariales and Pleosporales. Most of the fungi sequenced were intertidal mangrove taxa and belong to members of 12 families in the Pleosporales: Aigialaceae, Didymellaceae, Leptosphaeriaceae, Lenthitheciaceae, Lophiostomataceae, Massarinaceae, Montagnulaceae, Morosphaeriaceae, Phaeosphaeriaceae, Pleosporaceae, Testudinaceae and Trematosphaeriaceae. Two new families are described: Aigialaceae and Morosphaeriaceae, and three new genera proposed: Halomassarina, Morosphaeria and Rimora. -
H. Thorsten Lumbsch VP, Science & Education the Field Museum 1400
H. Thorsten Lumbsch VP, Science & Education The Field Museum 1400 S. Lake Shore Drive Chicago, Illinois 60605 USA Tel: 1-312-665-7881 E-mail: [email protected] Research interests Evolution and Systematics of Fungi Biogeography and Diversification Rates of Fungi Species delimitation Diversity of lichen-forming fungi Professional Experience Since 2017 Vice President, Science & Education, The Field Museum, Chicago. USA 2014-2017 Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. Since 2014 Curator, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2013-2014 Associate Director, Integrative Research Center, Science & Education, The Field Museum, Chicago, USA. 2009-2013 Chair, Dept. of Botany, The Field Museum, Chicago, USA. Since 2011 MacArthur Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2006-2014 Associate Curator, Dept. of Botany, The Field Museum, Chicago, USA. 2005-2009 Head of Cryptogams, Dept. of Botany, The Field Museum, Chicago, USA. Since 2004 Member, Committee on Evolutionary Biology, University of Chicago. Courses: BIOS 430 Evolution (UIC), BIOS 23410 Complex Interactions: Coevolution, Parasites, Mutualists, and Cheaters (U of C) Reading group: Phylogenetic methods. 2003-2006 Assistant Curator, Dept. of Botany, The Field Museum, Chicago, USA. 1998-2003 Privatdozent (Assistant Professor), Botanical Institute, University – GHS - Essen. Lectures: General Botany, Evolution of lower plants, Photosynthesis, Courses: Cryptogams, Biology -
Fungal Diversity in the Mediterranean Area
Fungal Diversity in the Mediterranean Area • Giuseppe Venturella Fungal Diversity in the Mediterranean Area Edited by Giuseppe Venturella Printed Edition of the Special Issue Published in Diversity www.mdpi.com/journal/diversity Fungal Diversity in the Mediterranean Area Fungal Diversity in the Mediterranean Area Editor Giuseppe Venturella MDPI • Basel • Beijing • Wuhan • Barcelona • Belgrade • Manchester • Tokyo • Cluj • Tianjin Editor Giuseppe Venturella University of Palermo Italy Editorial Office MDPI St. Alban-Anlage 66 4052 Basel, Switzerland This is a reprint of articles from the Special Issue published online in the open access journal Diversity (ISSN 1424-2818) (available at: https://www.mdpi.com/journal/diversity/special issues/ fungal diversity). For citation purposes, cite each article independently as indicated on the article page online and as indicated below: LastName, A.A.; LastName, B.B.; LastName, C.C. Article Title. Journal Name Year, Article Number, Page Range. ISBN 978-3-03936-978-2 (Hbk) ISBN 978-3-03936-979-9 (PDF) c 2020 by the authors. Articles in this book are Open Access and distributed under the Creative Commons Attribution (CC BY) license, which allows users to download, copy and build upon published articles, as long as the author and publisher are properly credited, which ensures maximum dissemination and a wider impact of our publications. The book as a whole is distributed by MDPI under the terms and conditions of the Creative Commons license CC BY-NC-ND. Contents About the Editor .............................................. vii Giuseppe Venturella Fungal Diversity in the Mediterranean Area Reprinted from: Diversity 2020, 12, 253, doi:10.3390/d12060253 .................... 1 Elias Polemis, Vassiliki Fryssouli, Vassileios Daskalopoulos and Georgios I. -
APP202274 S67A Amendment Proposal Sept 2018.Pdf
PROPOSAL FORM AMENDMENT Proposal to amend a new organism approval under the Hazardous Substances and New Organisms Act 1996 Send by post to: Environmental Protection Authority, Private Bag 63002, Wellington 6140 OR email to: [email protected] Applicant Damien Fleetwood Key contact [email protected] www.epa.govt.nz 2 Proposal to amend a new organism approval Important This form is used to request amendment(s) to a new organism approval. This is not a formal application. The EPA is not under any statutory obligation to process this request. If you need help to complete this form, please look at our website (www.epa.govt.nz) or email us at [email protected]. This form may be made publicly available so any confidential information must be collated in a separate labelled appendix. The fee for this application can be found on our website at www.epa.govt.nz. This form was approved on 1 May 2012. May 2012 EPA0168 3 Proposal to amend a new organism approval 1. Which approval(s) do you wish to amend? APP202274 The organism that is the subject of this application is also the subject of: a. an innovative medicine application as defined in section 23A of the Medicines Act 1981. Yes ☒ No b. an innovative agricultural compound application as defined in Part 6 of the Agricultural Compounds and Veterinary Medicines Act 1997. Yes ☒ No 2. Which specific amendment(s) do you propose? Addition of following fungal species to those listed in APP202274: Aureobasidium pullulans, Fusarium verticillioides, Kluyveromyces species, Sarocladium zeae, Serendipita indica, Umbelopsis isabellina, Ustilago maydis Aureobasidium pullulans Domain: Fungi Phylum: Ascomycota Class: Dothideomycetes Order: Dothideales Family: Dothioraceae Genus: Aureobasidium Species: Aureobasidium pullulans (de Bary) G. -
Phylogeny and Taxonomy of Obscure Genera of Microfungi
Persoonia 22, 2009: 139–161 www.persoonia.org RESEARCH ARTICLE doi:10.3767/003158509X461701 Phylogeny and taxonomy of obscure genera of microfungi P.W. Crous1, U. Braun2, M.J. Wingfield3, A.R. Wood4, H.D. Shin5, B.A. Summerell6, A.C. Alfenas7, C.J.R. Cumagun8, J.Z. Groenewald1 Key words Abstract The recently generated molecular phylogeny for the kingdom Fungi, on which a new classification scheme is based, still suffers from an under representation of numerous apparently asexual genera of microfungi. In an Brycekendrickomyces attempt to populate the Fungal Tree of Life, fresh samples of 10 obscure genera of hyphomycetes were collected. Chalastospora These fungi were subsequently established in culture, and subjected to DNA sequence analysis of the ITS and LSU Cyphellophora nrRNA genes to resolve species and generic questions related to these obscure genera. Brycekendrickomyces Dictyosporium (Herpotrichiellaceae) is introduced as a new genus similar to, but distinct from Haplographium and Lauriomyces. Edenia Chalastospora is shown to be a genus in the Pleosporales, with two new species, C. ellipsoidea and C. obclavata, phylogeny to which Alternaria malorum is added as an additional taxon under its oldest epithet, C. gossypii. Cyphellophora taxonomy eugeniae is newly described in Cyphellophora (Herpotrichiellaceae), and distinguished from other taxa in the genus. Thedgonia Dictyosporium is placed in the Pleosporales, with one new species, D. streliziae. The genus Edenia, which was Trochophora recently introduced for a sterile endophytic fungus isolated in Mexico, is shown to be a hyphomycete (Pleospo Verrucisporota rales) forming a pyronellea-like synanamorph in culture. Thedgonia is shown not to represent an anamorph of Vonarxia Mycosphaerella, but to belong to the Helotiales. -
Fungi Associated with Ips Acuminatus (Coleoptera: Curculionidae) in Ukraine with a Special Emphasis on Pathogenicity of Ophiostomatoid Species
EUROPEAN JOURNAL OF ENTOMOLOGYENTOMOLOGY ISSN (online): 1802-8829 Eur. J. Entomol. 114: 77–85, 2017 http://www.eje.cz doi: 10.14411/eje.2017.011 ORIGINAL ARTICLE Fungi associated with Ips acuminatus (Coleoptera: Curculionidae) in Ukraine with a special emphasis on pathogenicity of ophiostomatoid species KATERYNA DAVYDENKO 1, 2, RIMVYDAS VASAITIS 2 and AUDRIUS MENKIS 2 1 Ukrainian Research Institute of Forestry & Forest Melioration, Pushkinska st. 86, 61024 Kharkiv, Ukraine; e-mail: [email protected] 2 Department of Forest Mycology and Plant Pathology, Uppsala BioCenter, Swedish University of Agricultural Sciences, P.O. Box 7026, SE-75007, Uppsala, Sweden; e-mails: [email protected], [email protected] Key words. Coleoptera, Curculionidae, pine engraver beetle, Scots pine, Ips acuminatus, pathogens, Ophiostoma, Diplodia pinea, insect-fungus interaction Abstract. Conifer bark beetles are well known to be associated with fungal complexes, which consist of pathogenic ophiostoma- toid fungi as well as obligate saprotroph species. However, there is little information on fungi associated with Ips acuminatus in central and eastern Europe. The aim of the study was to investigate the composition of the fungal communities associated with the pine engraver beetle, I. acuminatus, in the forest-steppe zone in Ukraine and to evaluate the pathogenicity of six associated ophiostomatoid species by inoculating three-year-old Scots pine seedlings with these fungi. In total, 384 adult beetles were col- lected from under the bark of declining and dead Scots pine trees at two different sites. Fungal culturing from 192 beetles resulted in 447 cultures and direct sequencing of ITS rRNA from 192 beetles in 496 high-quality sequences. -
PERSOONIAL R Eflections
Persoonia 23, 2009: 177–208 www.persoonia.org doi:10.3767/003158509X482951 PERSOONIAL R eflections Editorial: Celebrating 50 years of Fungal Biodiversity Research The year 2009 represents the 50th anniversary of Persoonia as the message that without fungi as basal link in the food chain, an international journal of mycology. Since 2008, Persoonia is there will be no biodiversity at all. a full-colour, Open Access journal, and from 2009 onwards, will May the Fungi be with you! also appear in PubMed, which we believe will give our authors even more exposure than that presently achieved via the two Editors-in-Chief: independent online websites, www.IngentaConnect.com, and Prof. dr PW Crous www.persoonia.org. The enclosed free poster depicts the 50 CBS Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT most beautiful fungi published throughout the year. We hope Utrecht, The Netherlands. that the poster acts as further encouragement for students and mycologists to describe and help protect our planet’s fungal Dr ME Noordeloos biodiversity. As 2010 is the international year of biodiversity, we National Herbarium of the Netherlands, Leiden University urge you to prominently display this poster, and help distribute branch, P.O. Box 9514, 2300 RA Leiden, The Netherlands. Book Reviews Mu«enko W, Majewski T, Ruszkiewicz- The Cryphonectriaceae include some Michalska M (eds). 2008. A preliminary of the most important tree pathogens checklist of micromycetes in Poland. in the world. Over the years I have Biodiversity of Poland, Vol. 9. Pp. personally helped collect populations 752; soft cover. Price 74 €. W. Szafer of some species in Africa and South Institute of Botany, Polish Academy America, and have witnessed the of Sciences, Lubicz, Kraków, Poland. -
Genome Sequencing of a Yeast-Like Fungal Strain P6, a Novel Species of Aureobasidium Spp.: Insights Into Its Taxonomy, Evolution, and Biotechnological Potentials
Annals of Microbiology (2019) 69:1475–1488 https://doi.org/10.1007/s13213-019-01531-1 ORIGINAL ARTICLE Genome sequencing of a yeast-like fungal strain P6, a novel species of Aureobasidium spp.: insights into its taxonomy, evolution, and biotechnological potentials Shu-Lei Jia1 & Yan Ma1 & Zhe Chi1 & Guang-Lei Liu1 & Zhong Hu2 & Zhen-Ming Chi1 Received: 2 August 2019 /Accepted: 4 November 2019 /Published online: 6 December 2019 # The Author(s) 2019 Abstract Purpose This study aimed to look insights into taxonomy, evolution, and biotechnological potentials of a yeast-like fungal strain P6 isolated from a mangrove ecosystem. Methods The genome sequencing for the yeast-like fungal strain P6 was conducted on a Hiseq sequencing platform, and the genomic characteristics and annotations were analyzed. The central metabolism and gluconate biosynthesis pathway were studied through the genome sequence data by using the GO, KOG, and KEGG databases. The secondary metabolite potentials were also evaluated. Results The whole genome size of the P6 strain was 25.41Mb and the G + C content of its genome was 50.69%. Totally, 6098 protein-coding genes and 264 non-coding RNA genes were predicted. The annotation results showed that the yeast-like fungal strain P6 had complete metabolic pathways of TCA cycle, EMP pathway, pentose phosphate pathway, glyoxylic acid cycle, and other central metabolic pathways. Furthermore, the inulinase activity associated with β-fructofuranosidase and high glucose oxidase activity in this strain have been demonstrated. It was found that this yeast-like fungal strain was located at root of most species of Aureobasidium spp. and at a separate cluster of all the phylogenetic trees. -
1 Check-List of Cladosporium Names Frank M. DUGAN, Konstanze
Check-list of Cladosporium names Frank M. DUGAN , Konstanze SCHUBERT & Uwe BRAUN Abstract: DUGAN , F.M., SCHUBERT , K. & BRAUN ; U. (2004): Check-list of Cladosporium names. Schlechtendalia 11 : 1–119. Names of species and subspecific taxa referred to the hyphomycetous genus Cladosporium are listed. Citations for original descriptions, types, synonyms, teleomorphs (if known), references of important redescriptions in literature, illustrations as well as notes are given. This list contains data of 772 taxa, i.e., valid, invalid and illegitime species, varieties and formae as well as herbarium names. Zusammenfassung: DUGAN , F.M., SCHUBERT , K. & BRAUN ; U. (2004): Checkliste der Cladosporium -Namen. Schlechtendalia 11 : 1–119. Namen von Arten und subspezifischen Taxa der Hyphomycetengattung Cladosporium werden aufgelistet. Bibliographische Angaben zur Erstbeschreibung, Typusangaben, Synonyme, die Teleomorphe (falls bekannt), wichtige Literaturhinweise und Abbildungen sowie Anmerkungen werden angegeben. Die vorliegende Liste enthält Namen von 772 Taxa, d. h. gültige, ungültige und illegitime Arten, Varietäten, Formen und auch Herbarnamen. Introduction: Cladosporium Link (LINK 1816) is one of the largest genera of hyphomycetes, comprising more than 772 names, but also one of the most heterogeneous ones, which is not very surprising since all early circumscriptions and delimitations from similar genera were rather vague and imprecise (FRIES 1832, 1849; SACCARDO 1886; LINDAU 1907, etc.). All kinds of superficially similar cladosporioid fungi, i.e., amero- to phragmosporous dematiaceous hyphomycetes with conidia formed in acropetal chains, were assigned to Cladosporium s. lat., ranging from saprobes to plant pathogens as well as human-pathogenic taxa. DE VRIES (1952) and ELLIS (1971, 1976) maintained broad concepts of Cladosporium . ARX (1983), MORGAN - JONES & JACOBSEN (1988), MCKEMY & MORGAN -JONES (1990), MORGAN -JONES & MCKEMY (1990) and DAVID (1997) discussed the heterogeneity of Cladosporium and contributed towards a more natural circumscription of this genus.