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Habitat Selection of the Desert Night Lizard (Xantusia Vigilis) on Mojave Yucca (Yucca Schidigera) in the Mojave Desert, California
Habitat selection of the desert night lizard (Xantusia vigilis) on Mojave yucca (Yucca schidigera) in the Mojave Desert, California Kirsten Boylan1, Robert Degen2, Carly Sanchez3, Krista Schmidt4, Chantal Sengsourinho5 University of California, San Diego1, University of California, Merced2, University of California, Santa Cruz3, University of California, Davis4 , University of California, San Diego5 ABSTRACT The Mojave Desert is a massive natural ecosystem that acts as a biodiversity hotspot for hundreds of different species. However, there has been little research into many of the organisms that comprise these ecosystems, one being the desert night lizard (Xantusia vigilis). Our study examined the relationship between the common X. vigilis and the Mojave yucca (Yucca schidigera). We investigated whether X. vigilis exhibits habitat preference for fallen Y. schidigera log microhabitats and what factors make certain log microhabitats more suitable for X. vigilis inhabitation. We found that X. vigilis preferred Y. schidigera logs that were larger in circumference and showed no preference for dead or live clonal stands of Y. schidigera. When invertebrates were present, X. vigilis was approximately 50% more likely to also be present. These results suggest that X. vigilis have preferences for different types of Y. schidigera logs and logs where invertebrates are present. These findings are important as they help in understanding one of the Mojave Desert’s most abundant reptile species and the ecosystems of the Mojave Desert as a whole. INTRODUCTION such as the Mojave Desert in California. Habitat selection is an important The Mojave Desert has extreme factor in the shaping of an ecosystem. temperature fluctuations, ranging from Where an animal chooses to live and below freezing to over 134.6 degrees forage can affect distributions of plants, Fahrenheit (Schoenherr 2017). -
A Pipeline for Identifying Metagenomic Sequences in Radseq Data
Natural history bycatch: a pipeline for identifying metagenomic sequences in RADseq data Iris Holmes and Alison R. Davis Rabosky Department of Ecology and Evolutionary Biology, University of Michigan Museum of Zoology, University of Michigan, Ann Arbor, MI, USA ABSTRACT Background: Reduced representation genomic datasets are increasingly becoming available from a variety of organisms. These datasets do not target specific genes, and so may contain sequences from parasites and other organisms present in the target tissue sample. In this paper, we demonstrate that (1) RADseq datasets can be used for exploratory analysis of tissue-specific metagenomes, and (2) tissue collections house complete metagenomic communities, which can be investigated and quantified by a variety of techniques. Methods: We present an exploratory method for mining metagenomic “bycatch” sequences from a range of host tissue types. We use a combination of the pyRAD assembly pipeline, NCBI’s blastn software, and custom R scripts to isolate metagenomic sequences from RADseq type datasets. Results: When we focus on sequences that align with existing references in NCBI’s GenBank, we find that between three and five percent of identifiable double-digest restriction site associated DNA (ddRAD) sequences from host tissue samples are from phyla to contain known blood parasites. In addition to tissue samples, we examine ddRAD sequences from metagenomic DNA extracted snake and lizard hind-gut samples. We find that the sequences recovered from these samples match with expected bacterial -
Literature Cited in Lizards Natural History Database
Literature Cited in Lizards Natural History database Abdala, C. S., A. S. Quinteros, and R. E. Espinoza. 2008. Two new species of Liolaemus (Iguania: Liolaemidae) from the puna of northwestern Argentina. Herpetologica 64:458-471. Abdala, C. S., D. Baldo, R. A. Juárez, and R. E. Espinoza. 2016. The first parthenogenetic pleurodont Iguanian: a new all-female Liolaemus (Squamata: Liolaemidae) from western Argentina. Copeia 104:487-497. Abdala, C. S., J. C. Acosta, M. R. Cabrera, H. J. Villaviciencio, and J. Marinero. 2009. A new Andean Liolaemus of the L. montanus series (Squamata: Iguania: Liolaemidae) from western Argentina. South American Journal of Herpetology 4:91-102. Abdala, C. S., J. L. Acosta, J. C. Acosta, B. B. Alvarez, F. Arias, L. J. Avila, . S. M. Zalba. 2012. Categorización del estado de conservación de las lagartijas y anfisbenas de la República Argentina. Cuadernos de Herpetologia 26 (Suppl. 1):215-248. Abell, A. J. 1999. Male-female spacing patterns in the lizard, Sceloporus virgatus. Amphibia-Reptilia 20:185-194. Abts, M. L. 1987. Environment and variation in life history traits of the Chuckwalla, Sauromalus obesus. Ecological Monographs 57:215-232. Achaval, F., and A. Olmos. 2003. Anfibios y reptiles del Uruguay. Montevideo, Uruguay: Facultad de Ciencias. Achaval, F., and A. Olmos. 2007. Anfibio y reptiles del Uruguay, 3rd edn. Montevideo, Uruguay: Serie Fauna 1. Ackermann, T. 2006. Schreibers Glatkopfleguan Leiocephalus schreibersii. Munich, Germany: Natur und Tier. Ackley, J. W., P. J. Muelleman, R. E. Carter, R. W. Henderson, and R. Powell. 2009. A rapid assessment of herpetofaunal diversity in variously altered habitats on Dominica. -
Life History Account for Island Night Lizard
California Wildlife Habitat Relationships System California Department of Fish and Wildlife California Interagency Wildlife Task Group ISLAND NIGHT LIZARD Xantusia riversiana Family: XANTUSIIDAE Order: SQUAMATA Class: REPTILIA R035 Written by: R. Marlow Reviewed by: T. Papenfuss Edited by: R. Duke, J. Harris DISTRIBUTION, ABUNDANCE, AND SEASONALITY The island night lizard is presently known from three of the Channel Islands off the coast of southern California: San Clemente, Santa Barbara and San Nicolas. It may occur on other Channel Islands and has been reported from Santa Catalina, but these reports have not been substantiated (Stebbins 1954). These three islands provide a variety of habitats from coastal strand and sand dunes to chaparral and woodlands, and the lizards are found in all habitats that provide cover in great abundance (Stebbins 1954, Mautz and Case 1974). SPECIFIC HABITAT REQUIREMENTS Feeding: This species is omnivorous. It eats insects (silverfish, caterpillars, moths, ants, etc.), plants (up to 50% by volume) and possibly small mammals (Schwenkmeyer 1949, Knowlton 1949, Brattstrom 1952, Stebbins 1954). This lizard seems to be a food generalist and opportunist, taking advantage of whatever food source is available in an environment with few, if any, competitors. Cover: This species, like other members of this family, makes extensive use of cover. It is seldom observed on the surface in the open, but usually under objects or moving through thick vegetation, or around cover. It utilizes prostrate plant cover, the extensive patches of Opuntia or ice plant found on these islands, as well as rocks, logs and rubble (Stebbins 1954). Adequate cover in the form of vegetation, rock rubble, logs or other objects is probably the most important habitat requirement. -
Amphiumidae Cryptobranchidae Proteidae
Amphiumidae Amphiuma means – Two-toed Amphiuma cryptobranchidae Cryptobranchus alleganiensis – Hellbender Proteidae Necturus maculosus – Mudpuppy Sirenidae Siren intermedia – Lesser Siren Ambystomatidae Ambystoma gracile – Northwestern Salamander Ambystoma tigrinum – Tiger Salamander Ambystoma macrodactylum – Long-toed Salamander Ambystoma californiense – California Tiger Salamander Dicamptodontidae Dicamptodon ensatus – California Giant Salamander Dicamptodon tenebrosus – Pacific Giant Salamander Rhyacotritonidae Rhyacotriton variegatus – Southern Torrent Salamander Salamandridae Taricha torosa – California Newt Taricha Sierrae – Sierra Newt Taricha rivularis – Red-bellied Newt Taricha granulosa – Rough-skinned Newt Plethodontidae Aneides flavipunctatus – Black Salamander Aneides vagrans – Wandering Salamander Aneides ferreus – Clouded Salamander Aneides lugubris – Arboreal Salamander Plethodontidae Ensatina eschscholtzii – Ensatina Plethodontidae Batrachoseps attenuatus – California Slender Salamander Batrachoseps gavilanensis – Gabilan Mountains Slender Salamander Plethodontidae Plethodon dunni – Dunn’s Salamander Plethodon stormi – Siskiyou Mountains Salamander Plethodon elongatus – Del Norte Salamander Plethodon asupak – Scott Bar Salamander Plethodontidae Hydromantes brunus – Limestone Salamander Hydromantes platycephalus – Mount Lyell Salamander Hydromantes shastae – Shasta Salamander Ascaphidae Ascaphus truei – Tailed Frog Pelobatidae Spea hammondii – Western Spadefoot Spea intermontana – Great Basin Spadefoot Scaphiopus couchi -
Monitoring Results for Reptiles, Amphibians and Ants in the Nature Reserve of Orange County (NROC) 2002
Monitoring Results for Reptiles, Amphibians and Ants in the Nature Reserve of Orange County (NROC) 2002 Summary Report Prepared for: The Nature Reserve of Orange County – Lyn McAfee The Nature Conservancy – Trish Smith U.S. DEPARTMENT OF THE INTERIOR U.S. GEOLOGICAL SURVEY WESTERN ECOLOGICAL RESEARCH CENTER Monitoring Results for Reptiles, Amphibians and Ants in the Nature Reserve of Orange County (NROC) 2002 By Adam Backlin1, Cindy Hitchcock1, Krista Pease2 and Robert Fisher2 U.S. GEOLOGICAL SURVEY WESTERN ECOLOGICAL RESEARCH CENTER Annual Report Prepared for: The Nature Reserve of Orange County The Nature Conservancy 1San Diego Field Station-Irvine Office USGS Western Ecological Research Center 2883 Irvine Blvd. Irvine, CA 92602 2San Diego Field Station-San Diego Office USGS Western Ecological Research Center 5745 Kearny Villa Road, Suite M San Diego, CA 92123 Sacramento, California 2003 ii U.S. DEPARTMENT OF THE INTERIOR GALE A. NORTON, SECRETARY U.S. GEOLOGICAL SURVEY Charles G. Groat, Director The use of firm, trade, or brand names in this report is for identification purposes only and does not constitute endorsement by the U.S. Geological Survey. For additional information, contact: Center Director Western Ecological Research Center U.S. Geological Survey 7801 Folsom Blvd., Suite 101 Sacramento, CA 95826 iii Table of Contents Abstract .............................................................................................................................. 1 Research Goals .................................................................................................................. -
When Does Gene Flow Stop? a Mechanistic Approach to the Formation of Phylogeographic Breaks in Nature
When Does Gene Flow Stop? A Mechanistic Approach to the Formation of Phylogeographic Breaks in Nature by Iris Holmes A dissertation submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy Ecology and Evolutionary Biology in the University of Michigan 2020 Doctoral Committee: Assistant Professor Alison Davis Rabosky, Chair Research Professor Liliana Cortés Ortiz Professor Patrick Schloss Associate Professor Stephen Smith Iris A. Holmes [email protected] ORCID iD: 0000-0001-6150-6150 © Iris A. Holmes 2020 Dedication I dedicate this thesis to Michael Grundler, who is always there. ii Acknowledgements The research in this dissertation was supported by funding from the University of Michigan, including the Department of Ecology and Evolutionary Biology, the Museum of Zoology, and the Rackham Graduate School. It was also supported by grants from the Bureau of Land Management, and the STEPS Institute for Innovation in Environmental Research at the University of California. The research in my dissertation was greatly facilitated by the National Science Foundation Graduate Research Fellowship, the Rackham Predoctoral Fellowship, and the Rackham Graduate School Anna Olcott Smith Women in Science Award. I would like to thank my adviser, Alison Davis Rabosky, for her care and attention in developing both my strengths and weaknesses as a scientist. I would also like to thank the rest of my committee, Patrick Schloss, Stephen Smith, and Liliana Cortez Ortiz, for their help and support in completing my dissertation. In addition, I have had the privilege to work with excellent coauthors on the manuscripts in this dissertation, including Maggie Grundler, William Mautz, Ivan Monagan Jr, and Mike Westphal. -
Standard Common and Current Scientific Names for North American Amphibians, Turtles, Reptiles & Crocodilians
STANDARD COMMON AND CURRENT SCIENTIFIC NAMES FOR NORTH AMERICAN AMPHIBIANS, TURTLES, REPTILES & CROCODILIANS Sixth Edition Joseph T. Collins TraVis W. TAGGart The Center for North American Herpetology THE CEN T ER FOR NOR T H AMERI ca N HERPE T OLOGY www.cnah.org Joseph T. Collins, Director The Center for North American Herpetology 1502 Medinah Circle Lawrence, Kansas 66047 (785) 393-4757 Single copies of this publication are available gratis from The Center for North American Herpetology, 1502 Medinah Circle, Lawrence, Kansas 66047 USA; within the United States and Canada, please send a self-addressed 7x10-inch manila envelope with sufficient U.S. first class postage affixed for four ounces. Individuals outside the United States and Canada should contact CNAH via email before requesting a copy. A list of previous editions of this title is printed on the inside back cover. THE CEN T ER FOR NOR T H AMERI ca N HERPE T OLOGY BO A RD OF DIRE ct ORS Joseph T. Collins Suzanne L. Collins Kansas Biological Survey The Center for The University of Kansas North American Herpetology 2021 Constant Avenue 1502 Medinah Circle Lawrence, Kansas 66047 Lawrence, Kansas 66047 Kelly J. Irwin James L. Knight Arkansas Game & Fish South Carolina Commission State Museum 915 East Sevier Street P. O. Box 100107 Benton, Arkansas 72015 Columbia, South Carolina 29202 Walter E. Meshaka, Jr. Robert Powell Section of Zoology Department of Biology State Museum of Pennsylvania Avila University 300 North Street 11901 Wornall Road Harrisburg, Pennsylvania 17120 Kansas City, Missouri 64145 Travis W. Taggart Sternberg Museum of Natural History Fort Hays State University 3000 Sternberg Drive Hays, Kansas 67601 Front cover images of an Eastern Collared Lizard (Crotaphytus collaris) and Cajun Chorus Frog (Pseudacris fouquettei) by Suzanne L. -
Island Night Lizard (Xantusia Riversiana)
Island Night Lizard (Xantusia riversiana) 5-Year Review: Summary and Evaluation island night lizard (Xantusia riversiana). Photo credit: Dr. William Mautz. U.S. Fish and Wildlife Service Carlsbad Fish and Wildlife Office Carlsbad, CA October 2012 2012 5-Year Review for Island Night Lizard 5-YEAR REVIEW Island Night Lizard (Xantusia riversiana) I. GENERAL INFORMATION Purpose of 5-year Reviews: The U.S. Fish and Wildlife Service (Service) is required by section 4(c)(2) of the Endangered Species Act (Act) to conduct a status review of each listed species at least once every 5 years. The purpose of a 5-year review is to evaluate whether or not the species’ status has changed since it was listed (or since the most recent 5-year review). Based on the 5-year review, we recommend whether the species should be removed from the Federal List of Endangered and Threatened Wildlife (List), be changed in status from endangered to threatened, or be changed in status from threatened to endangered. Our original listing of a species as endangered or threatened is based on the existence of threats attributable to one or more of the five threat factors described in section 4(a)(1) of the Act, and we must consider these same five factors in any subsequent consideration of reclassification or delisting of a species. In the 5-year review, we consider the best available scientific and commercial data on the species, and focus on new information available since the species was listed or last reviewed. If we recommend a change in listing status based on the results of the 5-year review, we must propose to do so through a separate rule-making process defined in the Act that includes public review and comment. -
Species Risk Assessment
Ecological Sustainability Analysis of the Kaibab National Forest: Species Diversity Report Ver. 1.2 Prepared by: Mikele Painter and Valerie Stein Foster Kaibab National Forest For: Kaibab National Forest Plan Revision Analysis 22 December 2008 SpeciesDiversity-Report-ver-1.2.doc 22 December 2008 Table of Contents Table of Contents............................................................................................................................. i Introduction..................................................................................................................................... 1 PART I: Species Diversity.............................................................................................................. 1 Species List ................................................................................................................................. 1 Criteria .................................................................................................................................... 2 Assessment Sources................................................................................................................ 3 Screening Results.................................................................................................................... 4 Habitat Associations and Initial Species Groups........................................................................ 8 Species associated with ecosystem diversity characteristics of terrestrial vegetation or aquatic systems ...................................................................................................................... -
Phylogenetic Relationships Within the Lizard Clade Xantusiidae: Using Trees and Divergence Times to Address Evolutionary Questions at Multiple Levels ⇑ Brice P
Molecular Phylogenetics and Evolution 69 (2013) 109–122 Contents lists available at SciVerse ScienceDirect Molecular Phylogenetics and Evolution journal homepage: www.elsevier.com/locate/ympev Phylogenetic relationships within the lizard clade Xantusiidae: Using trees and divergence times to address evolutionary questions at multiple levels ⇑ Brice P. Noonan a,b, , Jennifer B. Pramuk b,c, Robert L. Bezy d, Elizabeth A. Sinclair e, Kevin de Queiroz f, Jack W. Sites Jr. b a Department of Biology, University of Mississippi, University, MS 38677, USA b Department of Biology and M.L. Bean Life Science Museum, Brigham Young University, Provo, UT 84602, USA c Department of Herpetology, Woodland Park Zoo, Seattle, WA 98103, USA d Natural History Museum of Los Angeles County, Los Angeles, CA 90007, USA e School of Plant Biology, University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia f National Museum of Natural History, Smithsonian Institution, PO Box 37012, MRC 162, Washington, DC 20013-7012, USA article info abstract Article history: Xantusiidae (night lizards) is a clade of small-bodied, cryptic lizards endemic to the New World. The clade Received 17 December 2012 is characterized by several features that would benefit from interpretation in a phylogenetic context, Revised 15 May 2013 including: (1) monophyletic status of extant taxa Cricosaura, Lepidophyma, and Xantusia; (2) a species Accepted 21 May 2013 endemic to Cuba (Cricosaura typica) of disputed age; (3) origins of the parthenogenetic species of Lepidop- Available online 3 June 2013 hyma; (4) pronounced micro-habitat differences accompanied by distinct morphologies in both Xantusia and Lepidophyma; and (5) placement of Xantusia riversiana, the only vertebrate species endemic to the Keywords: California Channel Islands, which is highly divergent from its mainland relatives. -
Conservation Status of the Herpetofauna of Baja California, México and Associated Islands in the Sea of Cortez and Pacific Ocean
Herpetological Conservation and Biology 4(3):358-378. Submitted: 3 June 2009; Accepted: 11 October 2009. CONSERVATION STATUS OF THE HERPETOFAUNA OF BAJA CALIFORNIA, MÉXICO AND ASSOCIATED ISLANDS IN THE SEA OF CORTEZ AND PACIFIC OCEAN 1, 4 2 3 ROBERT E. LOVICH , L. LEE GRISMER , AND GUSTAVO DANEMANN 1Department of Earth and Biological Sciences, Loma Linda University, Loma Linda, California 92350,USA, 2Department of Biology, LaSierra University, Riverside, California, 92515 USA 3Pronatura Noroeste, Calle Décima Nº60, Zona Centro, Ensenada, Baja California, CP 22800, México 4Present Address: Naval Facilities Engineering Command, Southwest;1220 Pacific Highway, San Diego, California 92132, USA, e-mail: [email protected] Abstract.—The herpetofauna of the Baja California Peninsula represent a unique assemblage of the biodiversity and heritage of México. Pressure from increasing development and land conversion of the second longest peninsula in the world, and its islands, requires a modern synthesis of the conservation status of the herpetofauna. Herein, we evaluate the herpetofauna by assessing regulatory protections, natural protected land areas, and maintenance of ex situ species in accredited zoos. We also summarize recent changes to the taxonomy and nomenclature for this herpetofauna, as well as range extensions that further our understanding of species distributions, many of which are poorly understood. Recommendations are given to enhance and further strengthen conservation actions in Baja California, México. Key Words.—amphibians, Baja California, conservation, México, reptiles, Sea of Cortez INTRODUCTION the northwest Pacific Coast. Inland from the northern peninsula are the highest elevations comprising The Baja California Peninsula, in northwestern chaparral, oak woodland, and coniferous forest México, consists of the states of Baja California and communities (Wiggins 1980).