9 by Interleukin-1· in S100A4-Positive Liposarcoma Cell Line: Correlation with Cell Invasiveness
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
A Single-Cell Transcriptional Atlas Identifies Extensive Heterogeneity in the Cellular Composition of Tendons
bioRxiv preprint doi: https://doi.org/10.1101/801266; this version posted October 10, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. A single-cell transcriptional atlas identifies extensive heterogeneity in the cellular composition of tendons Jacob B Swanson1, Andrea J De Micheli2, Nathaniel P Disser1, Leandro M Martinez1, Nicholas R Walker1,3, Benjamin D Cosgrove2, Christopher L Mendias1,3,* 1Hospital for Special Surgery, New York, NY, USA 2Meining School of Biomedical Engineering, Cornell University, Ithaca, NY, USA 3Department of Physiology and Biophysics, Weill Cornell Medical College, New York, NY, USA *Corresponding Author Christopher Mendias, PhD Hospital for Special Surgery 535 E 70th St New York, NY 10021 USA +1 212-606-1785 [email protected] Keywords: tenocyte; tendon fibroblast; pericyte; single-cell RNA sequencing bioRxiv preprint doi: https://doi.org/10.1101/801266; this version posted October 10, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Abstract Tendon is a dense, hypocellular connective tissue that transmits forces between muscles and bones. Cellular heterogeneity is increasingly recognized as an important factor in the biological basis of tissue homeostasis and disease, but little is known about the diversity of cells that populate tendon. Our objective was to explore the heterogeneity of cells in mouse Achilles tendons using single-cell RNA sequencing. We identified 13 unique cell types in tendons, including 4 previously undescribed populations of fibroblasts. -
Suramin Inhibits Osteoarthritic Cartilage Degradation by Increasing Extracellular Levels
Molecular Pharmacology Fast Forward. Published on August 10, 2017 as DOI: 10.1124/mol.117.109397 This article has not been copyedited and formatted. The final version may differ from this version. MOL #109397 Suramin inhibits osteoarthritic cartilage degradation by increasing extracellular levels of chondroprotective tissue inhibitor of metalloproteinases 3 (TIMP-3). Anastasios Chanalaris, Christine Doherty, Brian D. Marsden, Gabriel Bambridge, Stephen P. Wren, Hideaki Nagase, Linda Troeberg Arthritis Research UK Centre for Osteoarthritis Pathogenesis, Kennedy Institute of Downloaded from Rheumatology, University of Oxford, Roosevelt Drive, Headington, Oxford OX3 7FY, UK (A.C., C.D., G.B., H.N., L.T.); Alzheimer’s Research UK Oxford Drug Discovery Institute, University of Oxford, Oxford, OX3 7FZ, UK (S.P.W.); Structural Genomics Consortium, molpharm.aspetjournals.org University of Oxford, Old Road Campus Research Building, Old Road Campus, Roosevelt Drive, Headington, Oxford, OX3 7DQ (BDM). at ASPET Journals on September 29, 2021 1 Molecular Pharmacology Fast Forward. Published on August 10, 2017 as DOI: 10.1124/mol.117.109397 This article has not been copyedited and formatted. The final version may differ from this version. MOL #109397 Running title: Repurposing suramin to inhibit osteoarthritic cartilage loss. Corresponding author: Linda Troeberg Address: Kennedy Institute of Rheumatology, University of Oxford, Roosevelt Drive, Headington, Oxford OX3 7FY, UK Phone number: +44 (0)1865 612600 E-mail: [email protected] Downloaded -
Investigation of COVID-19 Comorbidities Reveals Genes and Pathways Coincident with the SARS-Cov-2 Viral Disease
bioRxiv preprint doi: https://doi.org/10.1101/2020.09.21.306720; this version posted September 21, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-ND 4.0 International license. Title: Investigation of COVID-19 comorbidities reveals genes and pathways coincident with the SARS-CoV-2 viral disease. Authors: Mary E. Dolan1*,2, David P. Hill1,2, Gaurab Mukherjee2, Monica S. McAndrews2, Elissa J. Chesler2, Judith A. Blake2 1 These authors contributed equally and should be considered co-first authors * Corresponding author [email protected] 2 The Jackson Laboratory, 600 Main St, Bar Harbor, ME 04609, USA Abstract: The emergence of the SARS-CoV-2 virus and subsequent COVID-19 pandemic initiated intense research into the mechanisms of action for this virus. It was quickly noted that COVID-19 presents more seriously in conjunction with other human disease conditions such as hypertension, diabetes, and lung diseases. We conducted a bioinformatics analysis of COVID-19 comorbidity-associated gene sets, identifying genes and pathways shared among the comorbidities, and evaluated current knowledge about these genes and pathways as related to current information about SARS-CoV-2 infection. We performed our analysis using GeneWeaver (GW), Reactome, and several biomedical ontologies to represent and compare common COVID- 19 comorbidities. Phenotypic analysis of shared genes revealed significant enrichment for immune system phenotypes and for cardiovascular-related phenotypes, which might point to alleles and phenotypes in mouse models that could be evaluated for clues to COVID-19 severity. -
Demethylation of TIMP2 and TIMP3 Inhibit Cell Proliferation, Migration and Invasion in Pituitary Adenoma
Demethylation of TIMP2 and TIMP3 inhibit cell proliferation, migration and invasion in pituitary adenoma Yongdong Yang the Second Aliated Hospital of Guilin Medical University Fanjun Huang the Second aliated Hospital of Guilin Medical University Xiufu Wu the Second aliated Hospital of Guilin Medical University Chunqin Huang the Second aliated Hospital of Guilin Medical University Shenyu Li ( [email protected] ) the second aliated hospital of guilin medical university Research article Keywords: Invasive pituitary adenoma, TIMPs, DNA methylation, 5-AzaC, GH3 Posted Date: October 29th, 2019 DOI: https://doi.org/10.21203/rs.2.15805/v2 License: This work is licensed under a Creative Commons Attribution 4.0 International License. Read Full License Page 1/15 Abstract Background: Pituitary adenoma (PA) is one of the most common intracranial neoplasms. Tissue inhibitors of metalloproteinases (TIMPs) are prognostic biological markers, but their biological roles remains largely unclear in invasive PA. Methods: The promoter methylation status of TIMP2 and TIMP3 genes in invasive PA tissues and cells was measured by methylation-specic polymerase chain reaction (MSP). The expression of TIMP1-3 was validated by quantitative real time PCR and western blot analysis. Overexpression and knockdown of TIMP2 and TIMP3 in GH3 cells were created by transfection of pcDNA3.0 and siRNA against TIMP2 and TIMP3, respectively. Functional experiments in GH3 cells were performed with CCK-8 assay, wound healing assay and transwell assay. Effects of 5- Azacytidene (5-AzaC) on the methylation of TIMP2 and TIMP3 gene, and DNA methyltransferase 1 (DNMT1), DNMT3a and DNMT3b were determined by western blot analysis. Results: We found the expression of TIMP1, TIMP2 and TIMP3 was down-regulated in invasive PA tissues and cells. -
Matrisome-Associated Gene Expression Patterns Correlating with TIMP2 in Cancer David Peeney1*, Yu Fan2, Trinh Nguyen 2, Daoud Meerzaman2 & William G
www.nature.com/scientificreports OPEN Matrisome-Associated Gene Expression Patterns Correlating with TIMP2 in Cancer David Peeney1*, Yu Fan2, Trinh Nguyen 2, Daoud Meerzaman2 & William G. Stetler-Stevenson 1 Remodeling of the extracellular matrix (ECM) to facilitate invasion and metastasis is a universal hallmark of cancer progression. However, a defnitive therapeutic target remains to be identifed in this tissue compartment. As major modulators of ECM structure and function, matrix metalloproteinases (MMPs) are highly expressed in cancer and have been shown to support tumor progression. MMP enzymatic activity is inhibited by the tissue inhibitor of metalloproteinase (TIMP1–4) family of proteins, suggesting that TIMPs may possess anti-tumor activity. TIMP2 is a promiscuous MMP inhibitor that is ubiquitously expressed in normal tissues. In this study, we address inconsistencies in the literature regarding the role of TIMP2 in tumor progression by analyzing co-expressed genes in tumor vs. normal tissue. Utilizing data from The Cancer Genome Atlas and Genotype-Tissue expression studies, focusing on breast and lung carcinomas, we analyzed the correlation between TIMP2 expression and the transcriptome to identify a list of genes whose expression is highly correlated with TIMP2 in tumor tissues. Bioinformatic analysis of the identifed gene list highlights a core of matrix and matrix- associated genes that are of interest as potential modulators of TIMP2 function, thus ECM structure, identifying potential tumor microenvironment biomarkers and/or therapeutic targets for further study. Matrix metalloproteinases (MMPs) are a family of zinc-dependent endopeptidases that are the major mediators of extracellular matrix (ECM) breakdown and turnover. Humans express 23 MMPs and these play a critical role in tissue development, homeostasis and disease progression. -
Influence of LPS, TNF, TGF-ß1 and IL-4 on the Expression of Mmps, Timps and Selected Cytokines in Rat Synovial Membranes Incubated in Vitro
127-137.qxd 18/11/2010 09:29 Ì ™ÂÏ›‰·127 INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE 27: 127-137, 2011 127 Influence of LPS, TNF, TGF-ß1 and IL-4 on the expression of MMPs, TIMPs and selected cytokines in rat synovial membranes incubated in vitro ANNA HYC, ANNA OSIECKA-IWAN, JUSTYNA NIDERLA-BIELINSKA and STANISLAW MOSKALEWSKI Department of Histology and Embryology, Medical University of Warsaw, Chalubinskiego 5 St., PL02-004 Warsaw, Poland Received July 30, 2010; Accepted September 28, 2010 DOI: 10.3892/ijmm.2010.550 Abstract. Synovial membranes are formed by four main Introduction types of cells, i.e. fibroblasts, macrophages, epitheliocytes and adipocytes. To study the combined effect of various The synovial membrane defined in anatomy textbooks as the factors on these cell populations, synovial membranes vascular connective tissue which produces the synovial fluid dissected from rat knee joints were incubated in control (1) is composed of the synovial lining and the subsynovium medium or medium with lipopolysaccharide (LPS), TNF, (2). The synovial lining, also called the synovial intima (3), TGF-ß1 or IL-4 for 12 h. LPS stimulated TNF secretion and consists of macrophage-like type A cells and fibroblast-like both agents stimulated secretion of IL-6. TGF-ß1 slightly B cells (4-6). It is supported by the highly vascularized increased IL-6 secretion. LPS increased the mRNA levels of subsynovium, consisting of loose alveolar tissue, dense fibrous IL-6, IL-1ß, TGF-ß1, MMP1a, MMP1b, MMP3, MMP9, tissue and fat pad (2). MMP13, MMP14, TIMP1 and TIMP3 while the mRNA Most of the studies on the cells present in the synovial levels of MMP2, TIMP2 and TIMP4 were significantly membrane deal with the cells forming the synovial lining decreased. -
Matrix Metalloproteinase9 As the Protein Target in Anti-Breast Cancer
Adhipandito et al. Future Journal of Pharmaceutical Sciences (2019) 5:1 Future Journal of https://doi.org/10.1186/s43094-019-0001-1 Pharmaceutical Sciences REVIEW Open Access Matrix metalloproteinase9 as the protein target in anti-breast cancer drug discovery: an approach by targeting hemopexin domain Christophorus Fideluno Adhipandito1, Diana Putri Kartika Sari Ludji1, Eko Aprilianto1, Riris Istighfari Jenie2, Belal Al-Najjar3 and Maywan Hariono1* Abstract Background: The discovery and development of anticancer still remain a challenge especially regarding the problem of cancer cell selectivity. Matrix metalloproteinase (MMP) was broadly studied as one of the protein targets to stop cancer angiogenesis as well as its cell migration. Main text: The MMP degrades extracellular matrix (ECM) such as collagen and gelatin which are important to control the cell migration from one to other sites. In cancer, this cell migration is regarded with metastasis, which is essential for the formation of new blood vessels called angiogenesis. The most common target in MMP, i.e. the catalytic site, is currently reported as being the non-selective target for inhibitor compounds that inhibit all MMPs but is associated with adverse side effects. Hemopexin, especially in MMP9 (PEX9) was found to be different from other domains in the MMP family which could potentially be the next target for anticancer due to the availability of its crystal structure in the Protein Data Bank (PDB). Conclusion: The PEX9 crystal structure was resolved as a homodimer connected by a hydrophobic area between two blades along the β-propeller which its structure and function for computational drug modelling can be studied. -
NEDD9 Depletion Leads to MMP14 Inactivation by TIMP2 and Prevents Invasion and Metastasis
Published OnlineFirst November 7, 2013; DOI: 10.1158/1541-7786.MCR-13-0300 Molecular Cancer Cell Death and Survival Research NEDD9 Depletion Leads to MMP14 Inactivation by TIMP2 and Prevents Invasion and Metastasis Sarah L. McLaughlin1, Ryan J. Ice1, Anuradha Rajulapati1, Polina Y. Kozyulina2, Ryan H. Livengood5, Varvara K. Kozyreva1, Yuriy V. Loskutov1, Mark V. Culp4, Scott A. Weed1,3, Alexey V. Ivanov1,2 and Elena N. Pugacheva1,2 Abstract The scaffolding protein NEDD9 is an established prometastatic marker in several cancers. Nevertheless, the molecular mechanisms of NEDD9-drivenmetastasisincancersremainill-defined. Here, using a compre- hensive breast cancer tissue microarray, it was shown that increased levels of NEDD9 protein significantly correlated with the transition from carcinoma in situ to invasive carcinoma. Similarly, it was shown that NEDD9 overexpression is a hallmark of highly invasive breast cancer cells. Moreover, NEDD9 expression is crucial for the protease-dependent mesenchymal invasion of cancer cells at the primary site but not at the metastatic site. Depletion of NEDD9 is sufficient to suppress invasion of tumor cells in vitro and in vivo, leading to decreased circulating tumor cells and lung metastases in xenograft models. Mechanistically, NEDD9 localized to invasive pseudopods and was required for local matrix degradation. Depletion of NEDD9 impaired invasion of cancer cells through inactivation of membrane-bound matrix metalloproteinase MMP14 by excess TIMP2 on the cell surface. Inactivation of MMP14 is accompanied by reduced collagenolytic activity of soluble metalloproteinases MMP2 and MMP9. Reexpression of NEDD9 is sufficient to restore the activity of MMP14 and the invasive properties of breast cancer cells in vitro and in vivo. -
Changes in Gene and Protein Expression of Metalloproteinase-2 and -9 and Their Inhibitors TIMP2 and TIMP3 in Different Parts of Fluoride-Exposed Rat Brain
International Journal of Molecular Sciences Article Changes in Gene and Protein Expression of Metalloproteinase-2 and -9 and Their Inhibitors TIMP2 and TIMP3 in Different Parts of Fluoride-Exposed Rat Brain Agnieszka Łukomska 1 , Irena Baranowska-Bosiacka 2, Karolina Dec 3, Anna Pilutin 4, Maciej Tarnowski 5 , Karolina Jakubczyk 3 , Wojciech Zwierełło˙ 1 , Marta Skórka-Majewicz 1 , Dariusz Chlubek 2 and Izabela Gutowska 1,* 1 Department of Medical Chemistry, Pomeranian Medical University, Powsta´nców Wlkp. 72 Av., 70-111 Szczecin, Poland; [email protected] (A.Ł.); [email protected] (W.Z.);˙ [email protected] (M.S.-M.) 2 Department of Biochemistry, Pomeranian Medical University, Powsta´nców Wlkp. 72 Av., 70-111 Szczecin, Poland; [email protected] (I.B.-B.); [email protected] (D.C.) 3 Department of Human Nutrition and Metabolomic, Pomeranian Medical University, Broniewskiego 24 Str., 71-460 Szczecin, Poland; [email protected] (K.D.); [email protected] (K.J.) 4 Department of Histology and Embryology, Pomeranian Medical University, Powsta´nców Wlkp. 72 Av., 70-111 Szczecin, Poland; [email protected] 5 Department of Physiology, Pomeranian Medical University, Powsta´nców Wlkp. 72 Av., 70-111 Szczecin, Poland; [email protected] * Correspondence: [email protected] Abstract: Fluoride (F) exposure decreases brain receptor activity and neurotransmitter production. Citation: Łukomska, A.; A recent study has shown that chronic fluoride exposure during childhood can affect cognitive func- Baranowska-Bosiacka, I.; Dec, K.; tion and decrease intelligence quotient, but the mechanism of this phenomenon is still incomplete. Pilutin, A.; Tarnowski, M.; Jakubczyk, Extracellular matrix (ECM) and its enzymes are one of the key players of neuroplasticity which is es- K.; Zwierełło,˙ W.; Skórka-Majewicz, sential for cognitive function development. -
A Dissertation Entitled SWI/SNF Chromatin
A Dissertation entitled SWI/SNF Chromatin Remodeling Enzymes: Epigenetic Modulators in Melanoma Invasiveness and Survival By Srinivas Vinod Saladi Submitted to the Graduate Faculty as partial fulfillment of the requirements for the Doctoral of Philosophy Degree in Biomedical Sciences Dr. Ivana de la Serna & Dr. Khew-Voon Chin, Committee Co-Chairs Dr. William Maltese, Committee Member Dr. Manohar Ratnam, Committee Member Dr. James Trempe, Committee Member Dr. Kam Yeung, Committee Member Dr. Patricia R. Komouniecki, Dean, College of Graduate Studies The University of Toledo August 2011 Copyright 2011, SrinivasVinod Saladi This document is copyrighted material. Under copyright law, no parts of this document may be reproduced without the expressed permission of the author ii Abstract SWI/SNF enzymes are multi subunit complexes consisting of an ATPase subunit, either BRG1 or BRM. They act as epigenetic modulators and remodel the chromatin in an ATP dependent manner. The SWI/SNF complex has 9-12 BRG1 or BRM associated factors called (BAFs). Earlier studies from our lab showed that BRG1 interacts with Microphthalmia associated transcription factor (MITF) to promote melanocyte differentiation. MITF is a lineage addiction oncogene in melanoma that regulates melanoma proliferation and metastasis. Several of the SWI/SNF subunits have been demonstrated to behave as tumor suppressors in mice and been found to be down regulated in many forms of cancer. However, our lab has shown that although, BRG1 or BRM is down-regulated in a small subset of melanoma cell lines, one catalytic subunit is always retained and the other SWI/SNF subunits are expressed at high levels compared to normal melanocytes. -
Absence of Tissue Inhibitor of Metalloproteinase-4 (TIMP4
www.nature.com/scientificreports OPEN Absence of Tissue Inhibitor of Metalloproteinase-4 (TIMP4) ameliorates high fat diet-induced Received: 13 September 2016 Accepted: 7 June 2017 obesity in mice due to defective Published online: 24 July 2017 lipid absorption Siva S. V. P. Sakamuri1, Russell Watts3, Abhijit Takawale1, Xiuhua Wang1, Samuel Hernandez- Anzaldo2, Wesam Bahitham3, Carlos Fernandez-Patron2, Richard Lehner3 & Zamaneh Kassiri1 Tissue inhibitor of metalloproteases (TIMPs) are inhibitors of matrix metalloproteinases (MMPs) that regulate tissue extracellular matrix (ECM) turnover. TIMP4 is highly expressed in adipose tissue, its levels are further elevated following high-fat diet, but its role in obesity is unknown. Eight-week old wild-type (WT) and Timp4-knockout (Timp4−/−) mice received chow or high fat diet (HFD) for twelve weeks. Timp4−/− mice exhibited a higher food intake but lower body fat gain. Adipose tissue of Timp4−/–-HFD mice showed reduced hypertrophy and fbrosis compared to WT-HFD mice. Timp4−/–- HFD mice were also protected from HFD-induced liver and skeletal muscle triglyceride accumulation and dyslipidemia. Timp4−/−-HFD mice exhibited reduced basic metabolic rate and energy expenditure, but increased respiratory exchange ratio. Increased free fatty acid excretion was detected in Timp4−/−- HFD compared to WT-HFD mice. CD36 protein, the major fatty acid transporter in the small intestine, increased with HFD in WT but not in Timp4−/− mice, despite a similar rise in Cd36 mRNA in both genotypes. Consistently, HFD increased enterocyte lipid content only in WT but not in Timp4−/− mice. Our study reveals that absence of TIMP4 can impair lipid absorption and the high fat diet-induced obesity in mice possibly by regulating the proteolytic processing of CD36 protein in the intestinal enterocytes. -
The Role of Timps in Regulation of Extracellular Matrix Proteolysis
Review The role of TIMPs in regulation of extracellular matrix proteolysis Valerie Arpino a,d, Michael Brock a,d and Sean E. Gill a,b,c,d a - Centre for Critical Illness Research, Lawson Health Research Institute, London Health Sciences Center, London, Ontario, Canada b - Division of Respirology, Schulich School of Medicine and Dentistry, Western University, London, Ontario, Canada c - Department of Medicine, Schulich School of Medicine and Dentistry, Western University, London, Ontario, Canada d - Department of Physiology and Pharmacology, Schulich School of Medicine and Dentistry, Western University, London, Ontario, Canada Correspondence to Sean E. Gill: 800 Commissioners Road East, Centre for Critical Illness Research, Victoria Research Labs, A6-134, London, ON, N6A 5W9, Canada. [email protected] http://dx.doi.org/10.1016/j.matbio.2015.03.005 Edited by W.C. Parks and S. Apte Abstract Tissue inhibitors of metalloproteinases (TIMPs), which inhibit matrix metalloproteinases (MMPs) as well as the closely related, a disintegrin and metalloproteinases (ADAMs) and ADAMs with thrombospondin motifs (ADAMTSs), were traditionally thought to control extracellular matrix (ECM) proteolysis through direct inhibition of MMP-dependent ECM proteolysis. This classical role for TIMPs suggests that increased TIMP levels results in ECM accumulation (or fibrosis), whereas loss of TIMPs leads to enhanced matrix proteolysis. Mice lacking TIMP family members have provided support for such a role; however, studies with these TIMP deficient mice have also demonstrated that loss of TIMPs can often be associated with an accumulation of ECM. Collectively, these studies suggest that the divergent roles of TIMPs in matrix accumulation and proteolysis, which together can be referred to as ECM turnover, are dependent on the TIMP, specific tissue, and local tissue environment (i.e.