Targeting BCL-2 in Cancer: Advances, Challenges, and Perspectives
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How I Treat Myelofibrosis
From www.bloodjournal.org by guest on October 7, 2014. For personal use only. Prepublished online September 16, 2014; doi:10.1182/blood-2014-07-575373 How I treat myelofibrosis Francisco Cervantes Information about reproducing this article in parts or in its entirety may be found online at: http://www.bloodjournal.org/site/misc/rights.xhtml#repub_requests Information about ordering reprints may be found online at: http://www.bloodjournal.org/site/misc/rights.xhtml#reprints Information about subscriptions and ASH membership may be found online at: http://www.bloodjournal.org/site/subscriptions/index.xhtml Advance online articles have been peer reviewed and accepted for publication but have not yet appeared in the paper journal (edited, typeset versions may be posted when available prior to final publication). Advance online articles are citable and establish publication priority; they are indexed by PubMed from initial publication. Citations to Advance online articles must include digital object identifier (DOIs) and date of initial publication. Blood (print ISSN 0006-4971, online ISSN 1528-0020), is published weekly by the American Society of Hematology, 2021 L St, NW, Suite 900, Washington DC 20036. Copyright 2011 by The American Society of Hematology; all rights reserved. From www.bloodjournal.org by guest on October 7, 2014. For personal use only. Blood First Edition Paper, prepublished online September 16, 2014; DOI 10.1182/blood-2014-07-575373 How I treat myelofibrosis By Francisco Cervantes, MD, PhD, Hematology Department, Hospital Clínic, IDIBAPS, University of Barcelona, Barcelona, Spain Correspondence: Francisco Cervantes, MD, Hematology Department, Hospital Clínic, Villarroel 170, 08036 Barcelona, Spain. Phone: +34 932275428. -
Multivariate Meta-Analysis of Differential Principal Components Underlying Human Primed and Naive-Like Pluripotent States
bioRxiv preprint doi: https://doi.org/10.1101/2020.10.20.347666; this version posted October 21, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. This article is a US Government work. It is not subject to copyright under 17 USC 105 and is also made available for use under a CC0 license. October 20, 2020 To: bioRxiv Multivariate Meta-Analysis of Differential Principal Components underlying Human Primed and Naive-like Pluripotent States Kory R. Johnson1*, Barbara S. Mallon2, Yang C. Fann1, and Kevin G. Chen2*, 1Intramural IT and Bioinformatics Program, 2NIH Stem Cell Unit, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, Maryland 20892, USA Keywords: human pluripotent stem cells; naive pluripotency, meta-analysis, principal component analysis, t-SNE, consensus clustering *Correspondence to: Dr. Kory R. Johnson ([email protected]) Dr. Kevin G. Chen ([email protected]) 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.10.20.347666; this version posted October 21, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. This article is a US Government work. It is not subject to copyright under 17 USC 105 and is also made available for use under a CC0 license. ABSTRACT The ground or naive pluripotent state of human pluripotent stem cells (hPSCs), which was initially established in mouse embryonic stem cells (mESCs), is an emerging and tentative concept. To verify this important concept in hPSCs, we performed a multivariate meta-analysis of major hPSC datasets via the combined analytic powers of percentile normalization, principal component analysis (PCA), t-distributed stochastic neighbor embedding (t-SNE), and SC3 consensus clustering. -
Discovery of Mcl-1 Inhibitors from Integrated High Throughput and Virtual Screening Received: 9 March 2018 Ahmed S
www.nature.com/scientificreports OPEN Discovery of Mcl-1 inhibitors from integrated high throughput and virtual screening Received: 9 March 2018 Ahmed S. A. Mady1,3, Chenzhong Liao1,8, Naval Bajwa1,9, Karson J. Kump1,4, Accepted: 5 June 2018 Fardokht A. Abulwerdi 1,3,10, Katherine L. Lev1, Lei Miao 1, Sierrah M. Grigsby1,2, Published: xx xx xxxx Andrej Perdih5, Jeanne A. Stuckey6, Yuhong Du7, Haian Fu 7 & Zaneta Nikolovska-Coleska1,2,3,4 Protein-protein interactions (PPIs) represent important and promising therapeutic targets that are associated with the regulation of various molecular pathways, particularly in cancer. Although they were once considered “undruggable,” the recent advances in screening strategies, structure-based design, and elucidating the nature of hot spots on PPI interfaces, have led to the discovery and development of successful small-molecule inhibitors. In this report, we are describing an integrated high-throughput and computational screening approach to enable the discovery of small-molecule PPI inhibitors of the anti- apoptotic protein, Mcl-1. Applying this strategy, followed by biochemical, biophysical, and biological characterization, nineteen new chemical scafolds were discovered and validated as Mcl-1 inhibitors. A novel series of Mcl-1 inhibitors was designed and synthesized based on the identifed difuryl-triazine core scafold and structure-activity studies were undertaken to improve the binding afnity to Mcl- 1. Compounds with improved in vitro binding potency demonstrated on-target activity in cell-based studies. The obtained results demonstrate that structure-based analysis complements the experimental high-throughput screening in identifying novel PPI inhibitor scafolds and guides follow-up medicinal chemistry eforts. -
Dynamics of the BH3-Only Protein Binding Interface of Bcl-Xl
Biophysical Journal Volume 109 September 2015 1049–1057 1049 Article Dynamics of the BH3-Only Protein Binding Interface of Bcl-xL Xiaorong Liu,1 Alex Beugelsdijk,1 and Jianhan Chen1,* 1Department of Biochemistry and Molecular Biophysics, Kansas State University, Manhattan, Kansas ABSTRACT The balance and interplay between pro-death and pro-survival members of the B-cell lymphoma-2 (Bcl-2) family proteins play key roles in regulation of the mitochondrial pathway of programmed cell death. Recent NMR and biochemical studies have revealed that binding of the proapoptotic BH3-only protein PUMA induces significant unfolding of antiapoptotic Bcl-xL at the interface, which in turn disrupts the Bcl-xL/p53 interaction to activate apoptosis. However, the molecular mecha- nism of such regulated unfolding of Bcl-xL is not fully understood. Analysis of the existing Protein Data Bank structures of Bcl-xL in both bound and unbound states reveal substantial intrinsic heterogeneity at its BH3-only protein binding interface. Large-scale atomistic simulations were performed in explicit solvent for six representative structures to further investigate the intrinsic confor- mational dynamics of Bcl-xL. The results support that the BH3-only protein binding interface of Bcl-xL is much more dynamic compared to the rest of the protein, both unbound and when bound to various BH3-only proteins. Such intrinsic interfacial confor- mational dynamics likely provides a physical basis that allows Bcl-xL to respond sensitively to detailed biophysical properties of the ligand. The ability of Bcl-xL to retain or even enhance dynamics at the interface in bound states could further facilitate the regulation of its interactions with various BH3-only proteins such as through posttranslational modifications. -
Analysis of the Indacaterol-Regulated Transcriptome in Human Airway
Supplemental material to this article can be found at: http://jpet.aspetjournals.org/content/suppl/2018/04/13/jpet.118.249292.DC1 1521-0103/366/1/220–236$35.00 https://doi.org/10.1124/jpet.118.249292 THE JOURNAL OF PHARMACOLOGY AND EXPERIMENTAL THERAPEUTICS J Pharmacol Exp Ther 366:220–236, July 2018 Copyright ª 2018 by The American Society for Pharmacology and Experimental Therapeutics Analysis of the Indacaterol-Regulated Transcriptome in Human Airway Epithelial Cells Implicates Gene Expression Changes in the s Adverse and Therapeutic Effects of b2-Adrenoceptor Agonists Dong Yan, Omar Hamed, Taruna Joshi,1 Mahmoud M. Mostafa, Kyla C. Jamieson, Radhika Joshi, Robert Newton, and Mark A. Giembycz Departments of Physiology and Pharmacology (D.Y., O.H., T.J., K.C.J., R.J., M.A.G.) and Cell Biology and Anatomy (M.M.M., R.N.), Snyder Institute for Chronic Diseases, Cumming School of Medicine, University of Calgary, Calgary, Alberta, Canada Received March 22, 2018; accepted April 11, 2018 Downloaded from ABSTRACT The contribution of gene expression changes to the adverse and activity, and positive regulation of neutrophil chemotaxis. The therapeutic effects of b2-adrenoceptor agonists in asthma was general enriched GO term extracellular space was also associ- investigated using human airway epithelial cells as a therapeu- ated with indacaterol-induced genes, and many of those, in- tically relevant target. Operational model-fitting established that cluding CRISPLD2, DMBT1, GAS1, and SOCS3, have putative jpet.aspetjournals.org the long-acting b2-adrenoceptor agonists (LABA) indacaterol, anti-inflammatory, antibacterial, and/or antiviral activity. Numer- salmeterol, formoterol, and picumeterol were full agonists on ous indacaterol-regulated genes were also induced or repressed BEAS-2B cells transfected with a cAMP-response element in BEAS-2B cells and human primary bronchial epithelial cells by reporter but differed in efficacy (indacaterol $ formoterol . -
BCL-2 Inhibitors for Chronic Lymphocytic Leukemia
L al of euk rn em u i o a J Robak, J Leuk 2015, 3:3 Journal of Leukemia DOI: 10.4172/2329-6917.1000e114 ISSN: 2329-6917 Editorial Open access BCL-2 inhibitors for Chronic Lymphocytic Leukemia Tadeusz Robak* Department of Hematology, Medical University of Lodz, 93-510 Lodz, ul, Ciolkowskiego 2, Poland *Corresponding author: Tadeusz Robak, Department of Hematology, Medical University of Lodz, Copernicus Memorial Hospital, 93-510 Lodz, Ul. Ciolkowskiego 2, Poland, Tel: +48 42 6895191; E-mail: [email protected] Rec date: August 10, 2015; Acc date: August 12, 2015; Pub date: August 24, 2015 Copyright: © 2015 Robak T. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Editorial cyclophosphamide and rituximab (FCR) or bendamustin-rituximab (BR) regimens in refractory CLL are ongoing (NCT00868413). B-cell chronic lymphocytic leukemia (CLL) is the most common adult leukemia in Europe and North America, with an annual Venetoclax ( GDC-0199, ABT-199, RG7601; Genentech, South San incidence of three to five cases per 100,000 [1]. The approval of Francisco, CA), is a first-in-class, orally bioavailable BCL-2 family rituximab-based immunochemotherapy represented a substantial protein inhibitor that binds with high affinity to BCL-2 and with lower therapeutic advance in CLL [2]. However, currently available therapies affinity to the other BCL-2 family proteins Bcl-xL, Bcl-w and Mcl-1 are only partially efficient, and there is an obvious need to develop [14]. -
SL10302R-FITC.Pdf
SunLong Biotech Co.,LTD Tel: 0086-571- 56623320 Fax:0086-571- 56623318 E-mail:[email protected] www.sunlongbiotech.com Rabbit Anti-Hrk/FITC Conjugated antibody SL10302R-FITC Product Name: Anti-Hrk/FITC Chinese Name: FITC标记的BCL2相互作用蛋白质抗体 Activator of apoptosis harakiri; Activator of apoptosis Hrk; BCL2 interacting protein; BH3 interacting domain protein 3; BID3; DP5; Harakiri BCL2 interacting protein; Alias: Human brain 3UTR of mRNA for neuronal death protein partial sequence; Neuronal death protein DP5; HRK_HUMAN. Organism Species: Rabbit Clonality: Polyclonal React Species: Human,Mouse,Rat,Dog,Cow, ICC=1:50-200IF=1:50-200 Applications: not yet tested in other applications. optimal dilutions/concentrations should be determined by the end user. Molecular weight: 10kDa Form: Lyophilized or Liquid Concentration: 1mg/ml immunogen: KLH conjugated synthetic peptide derived from human Activator of apoptosis harakiri Lsotype: IgG Purification: affinitywww.sunlongbiotech.com purified by Protein A Storage Buffer: 0.01M TBS(pH7.4) with 1% BSA, 0.03% Proclin300 and 50% Glycerol. Store at -20 °C for one year. Avoid repeated freeze/thaw cycles. The lyophilized antibody is stable at room temperature for at least one month and for greater than a year Storage: when kept at -20°C. When reconstituted in sterile pH 7.4 0.01M PBS or diluent of antibody the antibody is stable for at least two weeks at 2-4 °C. background: This gene encodes a member of the BCL-2 protein family. Members of this family are involved in activating or inhibiting apoptosis. The encoded protein localizes to Product Detail: intracellular membranes. This protein promotes apoptosis by interacting with the apoptotic inhibitors BCL-2 and BCL-X(L) via its BH3 domain. -
2P2idb : Une Base De Données Dediée a La Druggabilité Des
Aix-Marseille Université CRCM, Inserm UMR 1068, CNRS UMR 7258 --------- a Centre de Recherche en Cancérologie de Marseille --------- Thèse de Doctorat Bioinformatique, Biochimie Structurale et Génomique 2P2I DB : UNE BASE DE DONNÉES DEDIÉE A LA DRUGGABILITÉ DES INTERACTIONS PROTÉINE-PROTÉINE Présentée par Raphaël BOURGEAS Sous la direction du Dr. Philippe ROCHE Devant le jury composé de : Pr. Pedro Coutinho - Président du Jury Dr. Maria Miteva - Rapporteur Dr. Françoise Ochsenbein - Rapporteur Dr. Philippe Roche - Directeur de thèse Soutenance le 20 décembre 2012 TABLE DES MATIERES TABLE DES MATIERES ............................................................................................. 5 REMERCIEMENTS ...................................................................................................... 8 LISTE DES ABREVIATIONS .................................................................................. 10 AVANT-PROPOS ...................................................................................................... 11 LISTE DES PUBLICATIONS ................................................................................... 13 INTRODUCTION ...................................................................................................... 15 PREAMBULE ............................................................................................................................. 15 I.1 LES PROTEINES , CIBLES MOLECULAIRES THERAPEUTIQUES ............................................. 15 I.2 LE XX EME SIECLE : L’ERE DES ENZYMES -
Phenotype-Based Drug Screening Reveals Association Between Venetoclax Response and Differentiation Stage in Acute Myeloid Leukemia
Acute Myeloid Leukemia SUPPLEMENTARY APPENDIX Phenotype-based drug screening reveals association between venetoclax response and differentiation stage in acute myeloid leukemia Heikki Kuusanmäki, 1,2 Aino-Maija Leppä, 1 Petri Pölönen, 3 Mika Kontro, 2 Olli Dufva, 2 Debashish Deb, 1 Bhagwan Yadav, 2 Oscar Brück, 2 Ashwini Kumar, 1 Hele Everaus, 4 Bjørn T. Gjertsen, 5 Merja Heinäniemi, 3 Kimmo Porkka, 2 Satu Mustjoki 2,6 and Caroline A. Heckman 1 1Institute for Molecular Medicine Finland, Helsinki Institute of Life Science, University of Helsinki, Helsinki; 2Hematology Research Unit, Helsinki University Hospital Comprehensive Cancer Center, Helsinki; 3Institute of Biomedicine, School of Medicine, University of Eastern Finland, Kuopio, Finland; 4Department of Hematology and Oncology, University of Tartu, Tartu, Estonia; 5Centre for Cancer Biomarkers, De - partment of Clinical Science, University of Bergen, Bergen, Norway and 6Translational Immunology Research Program and Department of Clinical Chemistry and Hematology, University of Helsinki, Helsinki, Finland ©2020 Ferrata Storti Foundation. This is an open-access paper. doi:10.3324/haematol. 2018.214882 Received: December 17, 2018. Accepted: July 8, 2019. Pre-published: July 11, 2019. Correspondence: CAROLINE A. HECKMAN - [email protected] HEIKKI KUUSANMÄKI - [email protected] Supplemental Material Phenotype-based drug screening reveals an association between venetoclax response and differentiation stage in acute myeloid leukemia Authors: Heikki Kuusanmäki1, 2, Aino-Maija -
Selective Targeting of Antiapoptotic BCL-2 Proteins in Cancer
Received: 21 July 2017 Revised: 5 May 2018 Accepted: 12 May 2018 DOI: 10.1002/med.21516 REVIEW ARTICLE Selective targeting of antiapoptotic BCL-2 proteins in cancer Ahmet Can Timucin1,2 Huveyda Basaga2 Ozgur Kutuk3 1Faculty of Engineering and Natural Sciences, Department of Chemical and Biological Engineering, Uskudar University, Uskudar, Istanbul, Turkey 2Faculty of Engineering and Natural Sciences, Molecular Biology, Genetics and Bioengineering Program, Sabanci University, Tuzla, Istanbul, Turkey 3Department of Medical Genetics, Adana Medical and Research Center, School of Medicine, Baskent University, Yuregir, Adana, Turkey Correspondence Ahmet Can Timucin, Faculty of Engineering and Abstract Natural Sciences, Department of Chemical and Circumvention of apoptotic machinery is one of the distinctive prop- Biological Engineering, Uskudar University, erties of carcinogenesis. Extensively established key effectors of Altunizade Mahallesi, Haluk Turksoy Sk. No:14, 34662 Uskudar, Istanbul, Turkey. such apoptotic bypass mechanisms, the antiapoptotic BCL-2 (apop- Email: [email protected]/ can- tosis regulator BCL-2) proteins, determine the response of cancer [email protected] cells to chemotherapeutics. Within this background, research and development of antiapoptotic BCL-2 inhibitors were considered to have a tremendous amount of potential toward the discovery of novel pharmacological modulators in cancer. In this review, mile- stone achievements in the development of selective antiapoptotic BCL-2 proteins inhibitors for BCL-2, BCL-XL (BCL-2-like protein 1), and MCL-1 (induced myeloid leukemia cell differentiation protein MCL-1) were summarized and their future implications were dis- cussed. In the first section, the design and development of BCL- 2/BCL-XL dual inhibitor navitoclax, as well as the recent advances and clinical experience with selective BCL-2 inhibitor venetoclax, were synopsized. -
Identifying the Druggable Interactome of EWS-FLI1 Reveals MCL-1 Dependent Differential Sensitivities of Ewing Sarcoma Cells to Apoptosis Inducers
www.oncotarget.com Oncotarget, 2018, Vol. 9, (No. 57), pp: 31018-31031 Research Paper Identifying the druggable interactome of EWS-FLI1 reveals MCL-1 dependent differential sensitivities of Ewing sarcoma cells to apoptosis inducers Kalliopi Tsafou1,7,*, Anna Maria Katschnig3,*, Branka Radic-Sarikas2,3,*, Cornelia Noëlle Mutz3, Kristiina Iljin5, Raphaela Schwentner3, Maximilian O. Kauer3, Karin Mühlbacher3, Dave N.T. Aryee3,4, David Westergaard1, Saija Haapa-Paananen5, Vidal Fey5, Giulio Superti-Furga2, Jeffrey Toretsky6, Søren Brunak1 and Heinrich Kovar3,4 1Disease Systems Biology, Novo Nordisk Foundation Center for Protein Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark 2CeMM Research Center for Molecular Medicine of the Austrian Academy of Sciences, Vienna, Austria 3Children’s Cancer Research Institute, St. Anna Kinderkrebsforschung, Vienna, Austria 4Department of Pediatrics, Medical University of Vienna, Vienna, Austria 5Medical Biotechnology, VTT Technical Research Centre of Finland, Espoo, Finland 6Department of Oncology, Georgetown University, Medical Center, Washington, DC, USA 7Current address: Broad Institute of MIT and Harvard, Cambridge, MA, USA *These authors contributed equally to this work Correspondence to: Heinrich Kovar, email: [email protected] Keywords: high-throughput compound screening; Ewing sarcoma; drug-target network; apoptosis; BCL-2 inhibitors Received: March 07, 2018 Accepted: June 22, 2018 Published: July 24, 2018 Copyright: Tsafou et al. This is an open-access article distributed under the terms of the Creative Commons Attribution License 3.0 (CC BY 3.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. ABSTRACT Ewing sarcoma (EwS) is an aggressive pediatric bone cancer in need of more effective therapies than currently available. -
Differential Gene Expression in Brain and Liver Tissue of Wistar Rats After
Article Differential Gene Expression in Brain and Liver Tissue of Wistar Rats after Rapid Eye Movement Sleep Deprivation Atul Pandey 1,2,* , Ryan Oliver 2 and Santosh K Kar 1,3,* 1 School of Biotechnology, Jawaharlal Nehru University, New Delhi 110067, India 2 Department of Ecology, Evolution, and Behavior, The Alexander Silberman Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem 91904, Israel; [email protected] 3 Nano Herb Research Laboratory, Kalinga Institute of Industrial Technology (KIIT) Technology Bio Incubator, Campus-11, KIIT Deemed to be University, Bhubaneswar, Odisha 751024, India * Correspondence: [email protected] (A.P.); santoshkariis@rediffmail.com (S.K.K.); Tel.: +972-547301848 (A.P.); +91-9937085111 (S.K.K.) Received: 10 September 2020; Accepted: 21 October 2020; Published: 23 October 2020 Abstract: Sleep is essential for the survival of most living beings. Numerous researchers have identified a series of genes that are thought to regulate “sleep-state” or the “deprived state”. As sleep has a significant effect on physiology, we believe that lack of total sleep, or particularly rapid eye movement (REM) sleep, for a prolonged period would have a profound impact on various body tissues. Therefore, using the microarray method, we sought to determine which genes and processes are affected in the brain and liver of rats following nine days of REM sleep deprivation. Our findings showed that REM sleep deprivation affected a total of 652 genes in the brain and 426 genes in the liver. Only 23 genes were affected commonly, 10 oppositely, and 13 similarly across brain and liver tissue.