The Role of HRK Gene in Human Cancer

Total Page:16

File Type:pdf, Size:1020Kb

The Role of HRK Gene in Human Cancer Oncogene (2009) 27, S105–S113 & 2009 Macmillan Publishers Limited All rights reserved 0950-9232/09 $32.00 www.nature.com/onc REVIEW The role of HRK gene in human cancer M Nakamura, K Shimada and N Konishi Department of Pathology, Nara Medical University School of Medicine, Nara, Japan Apoptosis regulators play one of the most critical roles in Especially, members of the Bcl-2 gene family play tumorigenesis, and an imbalance between cell proliferation critical roles in apoptotic regulation in cancer cells, not and apoptosis may contribute to tumor progression. HRK only in tumorigenesis, but also in chemotherapy- was itself originally identified as a proapoptotic gene induced cell death (Reed, 1995). induced by diminished levels of cytokine in hematopoietic The proapoptotic Bcl-2 family can be separated into cells and cultured neurons and repressed by the expression two subgroups. The first subgroup includes members of of death-repressor proteins. A few analyses of HRK multiple Bcl-2 homology (BH) domain proteins, such as protein expression in primary central nervous system Bax; these gene proteins contain several BH regions. lymphomas have been performed, and little is known The second subgroup includes proteins that share only about the epigenetic or post-transcriptional mechanisms the homologous BH3 domain, an amphipathic a-helical that may participate in HRK inactivation. Here we show segment that is necessary for triggering cell death the data on the 50-CpG methylation status, loss of (Chittenden et al., 1995). The BH3 domain inactivates heterozygosity on 12q13.1 and its association with HRK apoptosis, but apparently does not interact with the expression in human malignancies, including prostate proapoptoic proteins, Bak or Bax (Inohara et al., 1997). cancers, astrocytic tumors and primary central nervous Members of this newly described group of BH3-only system lymphomas. Aberrant methylation of CpG islands proteins—including HRK/DP5, Bim, Noxa, Bbc3/ within the promoter is an epigenetic event largely Puma, Bmf, Bad, Bik/Blk/Nbk and Bid—all share the responsible for the silencing of the HRK gene and biological function of promoting Bax-dependent apop- subsequent low apoptotic counts in our series of malig- tosis through mitochondrial release of cytochrome c and nancies. Inactivation of HRK apparently occurs in a initiation of downstream cell death programs (Puthala- substantial proportion of all tumor phenotypes and, as a kath and Strasser, 2002). Among these factors, a novel potential proapoptotic gene, HRK may contribute to the regulator of cell death, Human Hrk, and its mouse development and progression of many human cancers. homolog (DP5) (Imaizumi et al., 1997), regulates Bcl-2 Oncogene (2009) 27, S105–S113; doi:10.1038/onc.2009.48 and Bcl-xL through selective interaction with the BH3 domain (Inohara et al., 1997). Keywords: HRK; prostate cancer; glioblastoma; primary HRK, discovered by Inohara et al. (1997), was itself central nervous system lymphoma originally identified as a proapoptotic gene located at 12q13.1 and is transcriptionally regulated in various cell types (Imaizumi et al., 1999; Sanz et al., 2000), being induced within an hour after administration of cell Introduction death stimuli (Harris and Johnson, 2001). HRK also selectively interacts with survival-promoting proteins, Apoptosis plays roles in both organ development and Bcl-2 and Bcl-xL. Common to the BH3 proteins, the tissue homeostasis. Its deregulation, together with product of HRK localizes to the membranes of defective control of proliferation, contributes to critical intracellular organelles in a pattern similar to that tumor progression (Evan and Vousden, 2001; Steinbach reported earlier for Bcl-2 and Bcl-xL. HRK is preva- et al., 2002; Debatin et al., 2003). Analyses of cell lently expressed in hematopoietic tissues and cultured turnover relating to apoptosis and proliferation provide neurons (Inohara et al., 1997; Sanz et al., 2000), but has insights into tumor doubling time, prognosis and also been shown in the pancreas, liver, lung, kidney and treatment response (Zhang et al., 1998) in that high prostate (Inohara et al., 1997; Higuchi et al., 2008). The apoptotic counts have been associated with a high role of HRK in apoptosis has been described mainly in histological grade and shortened survival in a number of hematopoietic tissues and cultured neurons; transcrip- studies (Vakkala et al., 1999). This cell death program is tion of HRK is specifically induced at the mRNA known to be activated or inactivated by a variety of and protein levels after growth factor withdrawal in genes, such as Bcl-2 and Bcl-xL, Bak and Bax. these cells, leading to cell death (Sanz et al., 2000; Harris and Johnson, 2001). Levels of HRK are high in embryonic neuronal tissues that undergo apoptosis Correspondence: Professor N Konishi, Department of Pathology, (Imaizumi et al., 1997), and in cultured neurons, its Nara Medical University School of Medicine, 840 Shijo-cho, Kashihara, Nara 634-8521, Japan. expression is increased after nerve growth factor with- E-mail: [email protected] drawal or exposure to b-amyloid (Imaizumi et al., 1999). HRK inactivation in human malignancy M Nakamura et al S106 Interestingly, b-amyloid-induced apoptosis of cultured much clinically useful information for tumor develop- neurons was shown to be mediated by E2F1 (Giovanni ment, prognosis and treatment response (Nakamura et al., 2000). et al., 1997). Some limited studies have focused on Some studies have also shown that transcription of critical regulators of apoptosis (Steinbach et al., 2002; the HRK gene is under the control of the c-Jun Debatin et al., 2003), and high apoptotic counts have N-terminal kinase pathway (Harris and Johnson, been associated with high histological grade and 2001) as well as the transcriptional repressor DREAM shortened survival (Shimada et al., 2008). Activated (Sanz et al., 2002) and that apoptosis by HRK requires regulation of mitogen-activated protein kinases and the expression of Bax (Harris and Johnson, 2001). Fas-associated death domain-containing proteins affects Sunayama et al. (2004) have shown that HRK appears cell growth, proliferation, survival and progression in to be located in the mitochondria associated with p32. prostate cancers (Shimada et al., 2006). This suggests that physical and functional interaction HRK seems to be an important component in the with p32 could have a crucial role in HRK-mediated regulation of apoptosis on tumor cells and the inactiva- apoptosis. In addition, the overexpression of Bcl-2 or tion of HRK, leading to loss of HRK expression and Bcl-xL inhibits the induction of HRK and prevents subsequent low apoptotic counts—events that may be apoptosis after growth factor withdrawal (Sanz et al., relevant to the pathogenesis of prostate cancer. 2000). As enforced coexpression of HRK and the antiapoptotic protein, Bcl-2 or Bcl-xL, inhibits the Aberrant methylation of HRK in the gene promoter and death-promoting activity of HRK (Inohara et al., exon 1. DNA methylation patterns in the promoter 1997), it appears that the balance between the steady- region can be determined by methylation-specific PCR state levels of Bcl-xL or Bcl-2 and those of HRK either (Herman et al., 1996). In addition to that of many tumor suppresses or induces apoptosis. suppressor genes, transcription of HRK might be The expression of HRK in hematopoietic progenitor regulated by the promoter that is rich in CpG cell lines can be induced not only by growth factor dinucleotides. The question, however, arises as to withdrawal but also by treatment with etoposide, a whether or not a reduced HRK expression in the tumor chemotherapeutic drug that induces apoptosis. On samples can be explained solely by promoter methyla- growth factor withdrawal or treatment with certain tion of the gene. CpG islands of HRK are relatively chemotherapeutic drugs, the repressor mechanism may large, and it is not clear whether they are coordinately be released (that is, by post-translational modification or regulated with respect to hypermethylation. To address binding to a specific factor), allowing the expression of the issue, we originally designed methylated and HRK. Thus, alterations in protein form/expression may unmethylated methylation-specific PCR primers that also be a critical feature for the survival or cell death of spanned the transcription start site and translation start cancer cells, enabling them to escape apoptosis resulting site for both promoter and exon 1 sequence (Nakamura from the DNA damage caused by chemotherapeutic et al., 2005b, 2006; Higuchi et al., 2008). Methylation of drugs and/or radiotherapy (Zhang et al., 2000). The loss the HRK promoter was detected in 0, 14, 38, 100 and of HRK expression and the underlying mechanism(s) of 25% of cancers graded as Gleason score (GS), downregulation, however, have not been widely exam- respectively (Table 1 and Figure 1). Detectable exon 1 ined in human malignancies. methylation was marginally more frequent in lower- In this text, we reviewed the 50-CpG methylation grade lesions; however, methylation of exon 1 occurred status, loss of heterozygosity (LOH) on 12q13.1 and its at the same frequency as promoter methylation in association with HRK expression in human malignan- higher-grade cancers. In comparison, none of the 30 cies, including prostate cancer, astrocytic tumor and samples of normal epithelial or stromal tissues from primary central nervous system lymphoma. areas adjacent to the tumors showed methylation in either gene region probed. HRK alteration in human malignancies Detection of HRK mRNA by reverse transcription PCR and immunohistochemistry. Although transcripts for Prostate cancer HRK were retrieved in the majority of normal controls In western countries, prostate cancer is the most and lower-grade prostate cancers, PCR products corre- common malignancy and the second leading cause of sponding to HRK were less infrequently found in high- cancer death in men (Nelson et al., 2003). Various grade cancers (Table 1 and Figure 1).
Recommended publications
  • Targeting BCL-2 in Cancer: Advances, Challenges, and Perspectives
    cancers Review Targeting BCL-2 in Cancer: Advances, Challenges, and Perspectives Shirin Hafezi 1 and Mohamed Rahmani 1,2,* 1 Research Institute of Medical & Health Sciences, University of Sharjah, P.O. Box 27272 Sharjah, United Arab Emirates; [email protected] 2 Department of Basic Medical Sciences, College of Medicine, University of Sharjah, P.O. Box 27272 Sharjah, United Arab Emirates * Correspondence: [email protected]; Tel.: +971-6505-7759 Simple Summary: Apoptosis, a programmed form of cell death, represents the main mechanism by which cells die. Such phenomenon is highly regulated by the BCL-2 family of proteins, which includes both pro-apoptotic and pro-survival proteins. The decision whether cells live or die is tightly controlled by a balance between these two classes of proteins. Notably, the pro-survival Bcl-2 proteins are frequently overexpressed in cancer cells dysregulating this balance in favor of survival and also rendering cells more resistant to therapeutic interventions. In this review, we outlined the most important steps in the development of targeting the BCL-2 survival proteins, which laid the ground for the discovery and the development of the selective BCL-2 inhibitor venetoclax as a therapeutic drug in hematological malignancies. The limitations and future directions are also discussed. Abstract: The major form of cell death in normal as well as malignant cells is apoptosis, which is a programmed process highly regulated by the BCL-2 family of proteins. This includes the antiapoptotic proteins (BCL-2, BCL-XL, MCL-1, BCLW, and BFL-1) and the proapoptotic proteins, which can be divided into two groups: the effectors (BAX, BAK, and BOK) and the BH3-only proteins Citation: Hafezi, S.; Rahmani, M.
    [Show full text]
  • Multivariate Meta-Analysis of Differential Principal Components Underlying Human Primed and Naive-Like Pluripotent States
    bioRxiv preprint doi: https://doi.org/10.1101/2020.10.20.347666; this version posted October 21, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. This article is a US Government work. It is not subject to copyright under 17 USC 105 and is also made available for use under a CC0 license. October 20, 2020 To: bioRxiv Multivariate Meta-Analysis of Differential Principal Components underlying Human Primed and Naive-like Pluripotent States Kory R. Johnson1*, Barbara S. Mallon2, Yang C. Fann1, and Kevin G. Chen2*, 1Intramural IT and Bioinformatics Program, 2NIH Stem Cell Unit, National Institute of Neurological Disorders and Stroke, National Institutes of Health, Bethesda, Maryland 20892, USA Keywords: human pluripotent stem cells; naive pluripotency, meta-analysis, principal component analysis, t-SNE, consensus clustering *Correspondence to: Dr. Kory R. Johnson ([email protected]) Dr. Kevin G. Chen ([email protected]) 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.10.20.347666; this version posted October 21, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. This article is a US Government work. It is not subject to copyright under 17 USC 105 and is also made available for use under a CC0 license. ABSTRACT The ground or naive pluripotent state of human pluripotent stem cells (hPSCs), which was initially established in mouse embryonic stem cells (mESCs), is an emerging and tentative concept. To verify this important concept in hPSCs, we performed a multivariate meta-analysis of major hPSC datasets via the combined analytic powers of percentile normalization, principal component analysis (PCA), t-distributed stochastic neighbor embedding (t-SNE), and SC3 consensus clustering.
    [Show full text]
  • Dynamics of the BH3-Only Protein Binding Interface of Bcl-Xl
    Biophysical Journal Volume 109 September 2015 1049–1057 1049 Article Dynamics of the BH3-Only Protein Binding Interface of Bcl-xL Xiaorong Liu,1 Alex Beugelsdijk,1 and Jianhan Chen1,* 1Department of Biochemistry and Molecular Biophysics, Kansas State University, Manhattan, Kansas ABSTRACT The balance and interplay between pro-death and pro-survival members of the B-cell lymphoma-2 (Bcl-2) family proteins play key roles in regulation of the mitochondrial pathway of programmed cell death. Recent NMR and biochemical studies have revealed that binding of the proapoptotic BH3-only protein PUMA induces significant unfolding of antiapoptotic Bcl-xL at the interface, which in turn disrupts the Bcl-xL/p53 interaction to activate apoptosis. However, the molecular mecha- nism of such regulated unfolding of Bcl-xL is not fully understood. Analysis of the existing Protein Data Bank structures of Bcl-xL in both bound and unbound states reveal substantial intrinsic heterogeneity at its BH3-only protein binding interface. Large-scale atomistic simulations were performed in explicit solvent for six representative structures to further investigate the intrinsic confor- mational dynamics of Bcl-xL. The results support that the BH3-only protein binding interface of Bcl-xL is much more dynamic compared to the rest of the protein, both unbound and when bound to various BH3-only proteins. Such intrinsic interfacial confor- mational dynamics likely provides a physical basis that allows Bcl-xL to respond sensitively to detailed biophysical properties of the ligand. The ability of Bcl-xL to retain or even enhance dynamics at the interface in bound states could further facilitate the regulation of its interactions with various BH3-only proteins such as through posttranslational modifications.
    [Show full text]
  • Analysis of the Indacaterol-Regulated Transcriptome in Human Airway
    Supplemental material to this article can be found at: http://jpet.aspetjournals.org/content/suppl/2018/04/13/jpet.118.249292.DC1 1521-0103/366/1/220–236$35.00 https://doi.org/10.1124/jpet.118.249292 THE JOURNAL OF PHARMACOLOGY AND EXPERIMENTAL THERAPEUTICS J Pharmacol Exp Ther 366:220–236, July 2018 Copyright ª 2018 by The American Society for Pharmacology and Experimental Therapeutics Analysis of the Indacaterol-Regulated Transcriptome in Human Airway Epithelial Cells Implicates Gene Expression Changes in the s Adverse and Therapeutic Effects of b2-Adrenoceptor Agonists Dong Yan, Omar Hamed, Taruna Joshi,1 Mahmoud M. Mostafa, Kyla C. Jamieson, Radhika Joshi, Robert Newton, and Mark A. Giembycz Departments of Physiology and Pharmacology (D.Y., O.H., T.J., K.C.J., R.J., M.A.G.) and Cell Biology and Anatomy (M.M.M., R.N.), Snyder Institute for Chronic Diseases, Cumming School of Medicine, University of Calgary, Calgary, Alberta, Canada Received March 22, 2018; accepted April 11, 2018 Downloaded from ABSTRACT The contribution of gene expression changes to the adverse and activity, and positive regulation of neutrophil chemotaxis. The therapeutic effects of b2-adrenoceptor agonists in asthma was general enriched GO term extracellular space was also associ- investigated using human airway epithelial cells as a therapeu- ated with indacaterol-induced genes, and many of those, in- tically relevant target. Operational model-fitting established that cluding CRISPLD2, DMBT1, GAS1, and SOCS3, have putative jpet.aspetjournals.org the long-acting b2-adrenoceptor agonists (LABA) indacaterol, anti-inflammatory, antibacterial, and/or antiviral activity. Numer- salmeterol, formoterol, and picumeterol were full agonists on ous indacaterol-regulated genes were also induced or repressed BEAS-2B cells transfected with a cAMP-response element in BEAS-2B cells and human primary bronchial epithelial cells by reporter but differed in efficacy (indacaterol $ formoterol .
    [Show full text]
  • SL10302R-FITC.Pdf
    SunLong Biotech Co.,LTD Tel: 0086-571- 56623320 Fax:0086-571- 56623318 E-mail:[email protected] www.sunlongbiotech.com Rabbit Anti-Hrk/FITC Conjugated antibody SL10302R-FITC Product Name: Anti-Hrk/FITC Chinese Name: FITC标记的BCL2相互作用蛋白质抗体 Activator of apoptosis harakiri; Activator of apoptosis Hrk; BCL2 interacting protein; BH3 interacting domain protein 3; BID3; DP5; Harakiri BCL2 interacting protein; Alias: Human brain 3UTR of mRNA for neuronal death protein partial sequence; Neuronal death protein DP5; HRK_HUMAN. Organism Species: Rabbit Clonality: Polyclonal React Species: Human,Mouse,Rat,Dog,Cow, ICC=1:50-200IF=1:50-200 Applications: not yet tested in other applications. optimal dilutions/concentrations should be determined by the end user. Molecular weight: 10kDa Form: Lyophilized or Liquid Concentration: 1mg/ml immunogen: KLH conjugated synthetic peptide derived from human Activator of apoptosis harakiri Lsotype: IgG Purification: affinitywww.sunlongbiotech.com purified by Protein A Storage Buffer: 0.01M TBS(pH7.4) with 1% BSA, 0.03% Proclin300 and 50% Glycerol. Store at -20 °C for one year. Avoid repeated freeze/thaw cycles. The lyophilized antibody is stable at room temperature for at least one month and for greater than a year Storage: when kept at -20°C. When reconstituted in sterile pH 7.4 0.01M PBS or diluent of antibody the antibody is stable for at least two weeks at 2-4 °C. background: This gene encodes a member of the BCL-2 protein family. Members of this family are involved in activating or inhibiting apoptosis. The encoded protein localizes to Product Detail: intracellular membranes. This protein promotes apoptosis by interacting with the apoptotic inhibitors BCL-2 and BCL-X(L) via its BH3 domain.
    [Show full text]
  • Differential Gene Expression in Brain and Liver Tissue of Wistar Rats After
    Article Differential Gene Expression in Brain and Liver Tissue of Wistar Rats after Rapid Eye Movement Sleep Deprivation Atul Pandey 1,2,* , Ryan Oliver 2 and Santosh K Kar 1,3,* 1 School of Biotechnology, Jawaharlal Nehru University, New Delhi 110067, India 2 Department of Ecology, Evolution, and Behavior, The Alexander Silberman Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem 91904, Israel; [email protected] 3 Nano Herb Research Laboratory, Kalinga Institute of Industrial Technology (KIIT) Technology Bio Incubator, Campus-11, KIIT Deemed to be University, Bhubaneswar, Odisha 751024, India * Correspondence: [email protected] (A.P.); santoshkariis@rediffmail.com (S.K.K.); Tel.: +972-547301848 (A.P.); +91-9937085111 (S.K.K.) Received: 10 September 2020; Accepted: 21 October 2020; Published: 23 October 2020 Abstract: Sleep is essential for the survival of most living beings. Numerous researchers have identified a series of genes that are thought to regulate “sleep-state” or the “deprived state”. As sleep has a significant effect on physiology, we believe that lack of total sleep, or particularly rapid eye movement (REM) sleep, for a prolonged period would have a profound impact on various body tissues. Therefore, using the microarray method, we sought to determine which genes and processes are affected in the brain and liver of rats following nine days of REM sleep deprivation. Our findings showed that REM sleep deprivation affected a total of 652 genes in the brain and 426 genes in the liver. Only 23 genes were affected commonly, 10 oppositely, and 13 similarly across brain and liver tissue.
    [Show full text]
  • Gene Section Review
    Atlas of Genetics and Cytogenetics in Oncology and Haematology OPEN ACCESS JOURNAL AT INIST-CNRS Gene Section Review HRK (harakiri, BCL2 interacting protein (contains only BH3 domain)) Jonathan Ham Molecular Haematology and Cancer Biology Unit, UCL Institute of Child Health, 30 Guilford Street, London WC1N 1EH, UK (JH) Published in Atlas Database: July 2011 Online updated version : http://AtlasGeneticsOncology.org/Genes/HRKID40865ch12q24.html DOI: 10.4267/2042/46085 This work is licensed under a Creative Commons Attribution-Noncommercial-No Derivative Works 2.0 France Licence. © 2011 Atlas of Genetics and Cytogenetics in Oncology and Haematology Identity following Nerve Growth Factor (NGF) withdrawal in sympathetic neurons, neuronally differentiated PC12 Other names: DP5; HARAKIRI; BID3 cells and dorsal root ganglion (DRG) neurons, KCl HGNC (Hugo): HRK deprivation in cerebellar granule neurons, beta amyloid treatment in cortical neurons and following axotomy of Location: 12q24.22 motor neurons in vivo (Imaizumi et al., 1997; Imaizumi Local order: According to Ensembl and the NCBI et al., 1999; Harris and Johnson, 2001; Imaizumi et al., Map Viewer, the genes flanking HRK in the plus strand 2004; Coultas et al., 2007; Ma et al., 2007; Towers et direction are: RNFT2, which is downstream of HRK al., 2009). Experiments with HRK-/- knockout mice and transcribed towards it, and FBXW8, which is have shown that HRK is not essential for normal upstream of HRK and transcribed divergently. embryonic development but does contribute to the Note: HRK / Dp5 / Bid3 is a BH3-only member of the death of DRG neurons following NGF deprivation in Bcl-2 family of apoptosis regulators.
    [Show full text]
  • Thirty Years of BCL-2: Translating Cell Death Discoveries Into Novel Cancer
    PERSPECTIVES normal physiology and cancer remains TIMELINE unclear, and is beyond the scope of this article (for a review on these topics, see Thirty years of BCL-2: translating REF. 10). This Timeline article focuses on key advances in our understanding of the function of the BCL-2 protein family in cell death discoveries into novel cell death, in the development of cancer, cancer therapies and as targets in cancer therapy. Early studies on apoptosis Alex R. D. Delbridge, Stephanie Grabow, Andreas Strasser and David L. Vaux In their 1972 paper that adopted the word ‘apoptosis’ to describe a physiological Abstract | The ‘hallmarks of cancer’ are generally accepted as a set of genetic and process of cellular suicide, Kerr and epigenetic alterations that a normal cell must accrue to transform into a fully colleagues11 recognized the presence malignant cancer. It follows that therapies designed to counter these alterations of apoptotic cells in tissue sections of miht e effective as anti-cancer strateies ver the past 3 years, research on certain human cancers. Accordingly, the BCL-2-regulated apoptotic pathway has led to the development of they proposed that increasing the rate of apoptosis of neoplastic cells relative to their small-molecule compounds, nown as BH3-mimetics, that ind to pro-survival rate of production could potentially be BCL-2 proteins to directly activate apoptosis of malignant cells. This Timeline therapeutic. However, interest in cell death article focuses on the discovery and study of BCL-2, the wider BCL-2 protein family and its role in cancer languished until the and, specifically, its roles in cancer development and therapy late 1980s, when genetic abnormalities that prevented cell death were directly linked to malignancy in humans.
    [Show full text]
  • Database and Bioinformatic Analysis of BCL-2 Family Proteins and BH3-Only Proteins Abdel Aouacheria, Vincent Navratil, Christophe Combet
    Database and Bioinformatic Analysis of BCL-2 Family Proteins and BH3-Only Proteins Abdel Aouacheria, Vincent Navratil, Christophe Combet To cite this version: Abdel Aouacheria, Vincent Navratil, Christophe Combet. Database and Bioinformatic Analysis of BCL-2 Family Proteins and BH3-Only Proteins. Gavathiotis E. BCL-2 Family Proteins. Methods in Molecular Biology, 1877, Springer Nature, pp.23-43, 2019, Methods in Molecular Biology, 978-1-4939- 8860-0. 10.1007/978-1-4939-8861-7_2. hal-02347884 HAL Id: hal-02347884 https://hal.archives-ouvertes.fr/hal-02347884 Submitted on 5 Nov 2019 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Copyright Database and bioinformatic analysis of BCL-2 family proteins and BH3-only proteins Abdel Aouacheria 1,*, Vincent Navratil 2 and Christophe Combet 3 1 ISEM, Institut des Sciences de l’Evolution de Montpellier, Université de Montpellier, UMR 5554, CNRS, IRD, EPHE, Place Eugène Bataillon, 34095 Montpellier, France 2 PRABI, Rhône Alpes Bioinformatics Center, UCBL, Lyon1, Université de Lyon, Lyon, France. 3 Centre de Recherche en Cancérologie de Lyon, UMR Inserm U1052, CNRS 5286, Université Claude Bernard Lyon 1, Centre Léon Bérard, Lyon, France.
    [Show full text]
  • Protein Phosphatase 2A B55ß Limits CD8 T Cell Lifespan Following Cytokine Withdrawal
    Protein phosphatase 2A B55ß limits CD8 T cell lifespan following cytokine withdrawal Noé Rodríguez-Rodríguez, … , Florencia Rosetti, Jose C. Crispin J Clin Invest. 2020. https://doi.org/10.1172/JCI129479. Research In-Press Preview Autoimmunity Graphical abstract Find the latest version: https://jci.me/129479/pdf Protein phosphatase 2A B55β limits CD8 T cell lifespan following cytokine withdrawal Noé Rodríguez-Rodríguez,1,2,3,4 Iris K. Madera-Salcedo,1 J. Alejandro Cisneros-Segura,1 H. Benjamín García-González,1 Sokratis A. Apostolidis,3,5 Abril Saint-Martin,1 Marcela Esquivel-Velázquez,1,6 Tran Nguyen,3 Dámaris P. Romero-Rodríguez,7 George C. Tsokos,3 Jorge Alcocer-Varela,1 Florencia Rosetti,1,* and José C. Crispín1,8,* 1 Departamento de Inmunología y Reumatología, Instituto Nacional de Ciencias Médicas y Nutrición Salvador Zubirán, Mexico City, 14080, Mexico 2 Departamento de Inmunología, Instituto de Investigaciones Biomédicas, UNAM, Mexico City, 04510, Mexico 3 Division of Rheumatology, Beth Israel Deaconess Medical Center & Harvard Medical School, Boston, MA, 02215, USA 4 Present address: Medical Research Council, Laboratory of Molecular Biology, Cambridge, CB2 0QH, UK 5 Present address: Division of Rheumatology, University of Pennsylvania, Philadelphia, PA 19104, USA. 6 Present address: Dirección de Investigación, Hospital General de México “Dr. Eduardo Liceaga”, Mexico City, 06726, Mexico 7 Flow Cytometry Core Facility, Instituto Nacional de Enfermedades Respiratorias “Ismael Cosío Villegas”, Mexico City, 14080, Mexico 8 Tecnologico de Monterrey, Escuela de Medicina y Ciencias de la Salud, Monterrey, NL, 64849, Mexico Authorship note: NRR and IKMS share the first author position in this work. NRR produced 56% and IKMS 44% of the data presented in the main figures.
    [Show full text]
  • Mechanisms of Action of Bcl-2 Family Proteins
    Downloaded from http://cshperspectives.cshlp.org/ on September 28, 2021 - Published by Cold Spring Harbor Laboratory Press Mechanisms of Action of Bcl-2 Family Proteins Aisha Shamas-Din1, Justin Kale1, Brian Leber1,2, and David W. Andrews1 1Department of Biochemistry and Biomedical Sciences, McMaster University, Hamilton, Ontario L8S4K1, Canada 2Department of Medicine, McMaster University, Hamilton, Ontario L8S4K1, Canada Correspondence: [email protected] The Bcl-2 family of proteins controls a critical step in commitment to apoptosis by regulating permeabilization of the mitochondrial outer membrane (MOM). The family is divided into three classes: multiregion proapoptotic proteins that directly permeabilize the MOM; BH3 proteins that directly or indirectly activate the pore-forming class members; and the anti- apoptotic proteins that inhibit this process at several steps. Different experimental ap- proaches have led to several models, each proposed to explain the interactions between Bcl-2 family proteins. The discovery that many of these interactions occur at or in membranes as well as in the cytoplasm, and are governed by the concentrations and relative binding affinities of the proteins, provides a new basis for rationalizing these models. Furthermore, these dynamic interactions cause conformational changes in the Bcl-2 proteins that modu- late their apoptotic function, providing additional potential modes of regulation. poptosis was formally described and named that was discovered as a partner in a reciprocal Ain 1972 as a unique morphological response chromosomal translocation in a human tumor to many different kinds of cell stress that was turned out to function not as a classic oncogene distinct from necrosis. However, despite the by driving cell division, but rather by prevent- novelty and utility of the concept, little experi- ing apoptosis.
    [Show full text]
  • Downloaded from TIGR [20,49]
    BMC Biology BioMed Central Research article Open Access The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications The Rice Chromosomes 11 and 12 Sequencing Consortia** Address: Waksman Institute, Rutgers University, Piscataway, New Jersey 08854 Email: The Rice Chromosomes 11 and 12 Sequencing Consortia** - [email protected] * Corresponding author Published: 27 September 2005 Received: 11 July 2005 Accepted: 27 September 2005 BMC Biology 2005, 3:20 doi:10.1186/1741-7007-3-20 This article is available from: http://www.biomedcentral.com/1741-7007/3/20 © 2005 Messing and The Rice Chromosomes 11 and 12 Sequencing Consortia*; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: Rice is an important staple food and, with the smallest cereal genome, serves as a reference species for studies on the evolution of cereals and other grasses. Therefore, decoding its entire genome will be a prerequisite for applied and basic research on this species and all other cereals. Results: We have determined and analyzed the complete sequences of two of its chromosomes, 11 and 12, which total 55.9 Mb (14.3% of the entire genome length), based on a set of overlapping clones. A total of 5,993 non-transposable element related genes are present on these chromosomes. Among them are 289 disease resistance-like and 28 defense-response genes, a higher proportion of these categories than on any other rice chromosome.
    [Show full text]