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Phylogenetic Investigations of Sordariaceae Based on Multiple Gene Sequences and Morphology
mycological research 110 (2006) 137– 150 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycres Phylogenetic investigations of Sordariaceae based on multiple gene sequences and morphology Lei CAI*, Rajesh JEEWON, Kevin D. HYDE Centre for Research in Fungal Diversity, Department of Ecology & Biodiversity, The University of Hong Kong, Pokfulam Road, Hong Kong SAR, PR China article info abstract Article history: The family Sordariaceae incorporates a number of fungi that are excellent model organisms Received 10 May 2005 for various biological, biochemical, ecological, genetic and evolutionary studies. To deter- Received in revised form mine the evolutionary relationships within this group and their respective phylogenetic 19 August 2005 placements, multiple-gene sequences (partial nuclear 28S ribosomal DNA, nuclear ITS ribo- Accepted 29 September 2005 somal DNA and partial nuclear b-tubulin) were analysed using maximum parsimony and Corresponding Editor: H. Thorsten Bayesian analyses. Analyses of different gene datasets were performed individually and Lumbsch then combined to generate phylogenies. We report that Sordariaceae, with the exclusion Apodus and Diplogelasinospora, is a monophyletic group. Apodus and Diplogelasinospora are Keywords: related to Lasiosphaeriaceae. Multiple gene analyses suggest that the spore sheath is not Ascomycota a phylogenetically significant character to segregate Asordaria from Sordaria. Smooth- Gelasinospora spored Sordaria species (including so-called Asordaria species) constitute a natural group. Neurospora Asordaria is therefore congeneric with Sordaria. Anixiella species nested among Gelasinospora Sordaria species, providing further evidence that non-ostiolate ascomata have evolved from ostio- late ascomata on several independent occasions. This study agrees with previous studies that show heterothallic Neurospora species to be monophyletic, but that homothallic ones may have a multiple origins. -
Plant Life MagillS Encyclopedia of Science
MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE MAGILLS ENCYCLOPEDIA OF SCIENCE PLANT LIFE Volume 4 Sustainable Forestry–Zygomycetes Indexes Editor Bryan D. Ness, Ph.D. Pacific Union College, Department of Biology Project Editor Christina J. Moose Salem Press, Inc. Pasadena, California Hackensack, New Jersey Editor in Chief: Dawn P. Dawson Managing Editor: Christina J. Moose Photograph Editor: Philip Bader Manuscript Editor: Elizabeth Ferry Slocum Production Editor: Joyce I. Buchea Assistant Editor: Andrea E. Miller Page Design and Graphics: James Hutson Research Supervisor: Jeffry Jensen Layout: William Zimmerman Acquisitions Editor: Mark Rehn Illustrator: Kimberly L. Dawson Kurnizki Copyright © 2003, by Salem Press, Inc. All rights in this book are reserved. No part of this work may be used or reproduced in any manner what- soever or transmitted in any form or by any means, electronic or mechanical, including photocopy,recording, or any information storage and retrieval system, without written permission from the copyright owner except in the case of brief quotations embodied in critical articles and reviews. For information address the publisher, Salem Press, Inc., P.O. Box 50062, Pasadena, California 91115. Some of the updated and revised essays in this work originally appeared in Magill’s Survey of Science: Life Science (1991), Magill’s Survey of Science: Life Science, Supplement (1998), Natural Resources (1998), Encyclopedia of Genetics (1999), Encyclopedia of Environmental Issues (2000), World Geography (2001), and Earth Science (2001). ∞ The paper used in these volumes conforms to the American National Standard for Permanence of Paper for Printed Library Materials, Z39.48-1992 (R1997). Library of Congress Cataloging-in-Publication Data Magill’s encyclopedia of science : plant life / edited by Bryan D. -
615.954Foo3rded.Pdf
Index Acquired immunodeficiency syndrome pinnipeds (seals, sea lions, walruses), 47ll-1 (AIDS), 451-3, 474, 475 second intermediate hosts, 471 Acromelic acids, 605 Arcobacterspp., 272-3 Acute non-bacterial gastroenteritis see Arizona spp., 344 Noroviruses Ascaris suum, 476 Adenoviruses,404 Aspergillusflavus, A. parasiticus see Aeromonas spp., 342-3 Aflatoxin Aeramonas hydrophile, 342-3 Aspergillus mycotoxins (nitropropionic acid, Aflatoxin, 586--9, 609-12 territrems, sterigmatocystin), 597--8 Aspergillusjlavus, A. parasiticus, 586 Astroviruses, 402-3 biosynthesis, 587-8 carcinogenesis in humans, 588-9 Bacillary dysentery, 359-60 ebselen, 625 Bacillus cereus gastroenteritis, 563-77, hepatitis B virus and carcinogenesis, contemporary problems, 564 588-9 historical aspects, 563--4 human foods (com, cotton seeds, peanuts, outbreaks, 57ll-1 tree nuts), 588 treatment and prevention. 577 Agaricus bisporus, 606 Bacillus cereus, 56&-75 AIDS see Acquired immunodeficiency antibodies, 574-5 syndrome characteristics, 564-5 Alcaligenes[aecalis, 343--4 chemical preservatives, 572 Allyl isothiocyanates, 694 detection, 573--4 Alternaria mycotoxins, 600 growth and survival, 572 Amanita spp. toxins (amanitins, growth temperature, 568 phallotoxins, virotoxins). 602-3 isolation, 573 ibotenic acid (lBA), 604 peR test, 574 isoxazoles, 605 prevalence in foods. 571-2 muscarine (MUS), 604-5 spore antibodies, 574-5 Amnesic shellfish poisoning (domoic acid), spores, germination, 572 676,682--4 spores, heat resistance of, 572 Pseudo-nitzschia spp., 682-3 virulence -
Perithecial Ascomycetes from the 400 Million Year Old Rhynie Chert: an Example of Ancestral Polymorphism
Mycologia, 97(1), 2005, pp. 269±285. q 2005 by The Mycological Society of America, Lawrence, KS 66044-8897 Perithecial ascomycetes from the 400 million year old Rhynie chert: an example of ancestral polymorphism Editor's note: Unfortunately, the plates for this article published in the December 2004 issue of Mycologia 96(6):1403±1419 were misprinted. This contribution includes the description of a new genus and a new species. The name of a new taxon of fossil plants must be accompanied by an illustration or ®gure showing the essential characters (ICBN, Art. 38.1). This requirement was not met in the previous printing, and as a result we are publishing the entire paper again to correct the error. We apologize to the authors. T.N. Taylor1 terpreted as the anamorph of the fungus. Conidioge- Department of Ecology and Evolutionary Biology, and nesis is thallic, basipetal and probably of the holoar- Natural History Museum and Biodiversity Research thric-type; arthrospores are cube-shaped. Some peri- Center, University of Kansas, Lawrence, Kansas thecia contain mycoparasites in the form of hyphae 66045 and thick-walled spores of various sizes. The structure H. Hass and morphology of the fossil fungus is compared H. Kerp with modern ascomycetes that produce perithecial as- Forschungsstelle fuÈr PalaÈobotanik, Westfalische cocarps, and characters that de®ne the fungus are Wilhelms-UniversitaÈt MuÈnster, Germany considered in the context of ascomycete phylogeny. M. Krings Key words: anamorph, arthrospores, ascomycete, Bayerische Staatssammlung fuÈr PalaÈontologie und ascospores, conidia, fossil fungi, Lower Devonian, my- Geologie, Richard-Wagner-Straûe 10, 80333 MuÈnchen, coparasite, perithecium, Rhynie chert, teleomorph Germany R.T. -
Solanum Alkaloids and Their Pharmaceutical Roles: a Review
Journal of Analytical & Pharmaceutical Research Solanum Alkaloids and their Pharmaceutical Roles: A Review Abstract Review Article The genus Solanum is treated to be one of the hypergenus among the flowering epithets. The genus is well represented in the tropical and warmer temperate Volume 3 Issue 6 - 2016 families and is comprised of about 1500 species with at least 5000 published Solanum species are endemic to the northeastern region. 1Department of Botany, India Many Solanum species are widely used in popular medicine or as vegetables. The 2Department of Botany, Trivandrum University College, India presenceregions. About of the 20 steroidal of these alkaloid solasodine, which is potentially an important starting material for the synthesis of steroid hormones, is characteristic of *Corresponding author: Murugan K, Plant Biochemistry the genus Solanum. Soladodine, and its glocosylated forms like solamargine, and Molecular Biology Lab, Department of Botany, solosonine and other compounds of potential therapeutic values. India, Email: Keywords: Solanum; Steroidal alkaloid; Solasodine; Hypergenus; Glocosylated; Trivandrum University College, Trivandrum 695 034, Kerala, Injuries; Infections Received: | Published: October 21, 2016 December 15, 2016 Abbreviations: TGA: Total Glycoalkaloid; SGA: Steroidal range of biological activities such as antimicrobial, antirheumatics, Glycoalkaloid; SGT: Sergeant; HMG: Hydroxy Methylglutaryl; LDL: Low Density Lipoprotein; ACAT: Assistive Context Aware Further, these alkaloids are of paramount importance in drug Toolkit; HMDM: Human Monocyte Derived Macrophage; industriesanticonvulsants, as they anti-inflammatory, serve as precursors antioxidant or lead molecules and anticancer. for the synthesis of many of the steroidal drugs which have been used CE: Cholesterol Ester; CCl4: Carbon Tetrachloride; 6-OHDA: 6-hydroxydopamine; IL: Interleukin; TNF: Tumor Necrosis Factor; DPPH: Diphenyl-2-Picryl Hydrazyl; FRAP: Fluorescence treatments. -
Coprophilous Fungal Community of Wild Rabbit in a Park of a Hospital (Chile): a Taxonomic Approach
Boletín Micológico Vol. 21 : 1 - 17 2006 COPROPHILOUS FUNGAL COMMUNITY OF WILD RABBIT IN A PARK OF A HOSPITAL (CHILE): A TAXONOMIC APPROACH (Comunidades fúngicas coprófilas de conejos silvestres en un parque de un Hospital (Chile): un enfoque taxonómico) Eduardo Piontelli, L, Rodrigo Cruz, C & M. Alicia Toro .S.M. Universidad de Valparaíso, Escuela de Medicina Cátedra de micología, Casilla 92 V Valparaíso, Chile. e-mail <eduardo.piontelli@ uv.cl > Key words: Coprophilous microfungi,wild rabbit, hospital zone, Chile. Palabras clave: Microhongos coprófilos, conejos silvestres, zona de hospital, Chile ABSTRACT RESUMEN During year 2005-through 2006 a study on copro- Durante los años 2005-2006 se efectuó un estudio philous fungal communities present in wild rabbit dung de las comunidades fúngicas coprófilos en excementos de was carried out in the park of a regional hospital (V conejos silvestres en un parque de un hospital regional Region, Chile), 21 samples in seven months under two (V Región, Chile), colectándose 21 muestras en 7 meses seasonable periods (cold and warm) being collected. en 2 períodos estacionales (fríos y cálidos). Un total de Sixty species and 44 genera as a total were recorded in 60 especies y 44 géneros fueron detectados en el período the sampling period, 46 species in warm periods and 39 de muestreo, 46 especies en los períodos cálidos y 39 en in the cold ones. Major groups were arranged as follows: los fríos. La distribución de los grandes grupos fue: Zygomycota (11,6 %), Ascomycota (50 %), associated Zygomycota(11,6 %), Ascomycota (50 %), géneros mitos- mitosporic genera (36,8 %) and Basidiomycota (1,6 %). -
Plant Secondary Metabolites: an Opportunity for Circular Economy
molecules Review Plant Secondary Metabolites: An Opportunity for Circular Economy Ilaria Chiocchio , Manuela Mandrone * , Paola Tomasi, Lorenzo Marincich and Ferruccio Poli Department of Pharmacy and Biotechnology, Alma Mater Studiorum—University of Bologna, Via Irnerio 42, 40126 Bologna, Italy; [email protected] (I.C.); [email protected] (P.T.); [email protected] (L.M.); [email protected] (F.P.) * Correspondence: [email protected]; Tel.: +39-0512091294 Abstract: Moving toward a more sustainable development, a pivotal role is played by circular economy and a smarter waste management. Industrial wastes from plants offer a wide spectrum of possibilities for their valorization, still being enriched in high added-value molecules, such as secondary metabolites (SMs). The current review provides an overview of the most common SM classes (chemical structures, classification, biological activities) present in different plant waste/by- products and their potential use in various fields. A bibliographic survey was carried out, taking into account 99 research articles (from 2006 to 2020), summarizing all the information about waste type, its plant source, industrial sector of provenience, contained SMs, reported bioactivities, and proposals for its valorization. This survey highlighted that a great deal of the current publications are focused on the exploitation of plant wastes in human healthcare and food (including cosmetic, pharmaceutical, nutraceutical and food additives). However, as summarized in this review, plant SMs also possess an enormous potential for further uses. Accordingly, an increasing number of investigations on Citation: Chiocchio, I.; Mandrone, neglected plant matrices and their use in areas such as veterinary science or agriculture are expected, M.; Tomasi, P.; Marincich, L.; Poli, F. -
The Genus Podospora (Lasiosphaeriaceae, Sordariales) in Brazil
Mycosphere 6 (2): 201–215(2015) ISSN 2077 7019 www.mycosphere.org Article Mycosphere Copyright © 2015 Online Edition Doi 10.5943/mycosphere/6/2/10 The genus Podospora (Lasiosphaeriaceae, Sordariales) in Brazil Melo RFR1, Miller AN2 and Maia LC1 1Universidade Federal de Pernambuco, Departamento de Micologia, Centro de Ciências Biológicas, Avenida da Engenharia, s/n, 50740–600, Recife, Pernambuco, Brazil. [email protected] 2 Illinois Natural History Survey, University of Illinois, 1816 S. Oak St., Champaign, IL 61820 Melo RFR, Miller AN, MAIA LC 2015 – The genus Podospora (Lasiosphaeriaceae, Sordariales) in Brazil. Mycosphere 6(2), 201–215, Doi 10.5943/mycosphere/6/2/10 Abstract Coprophilous species of Podospora reported from Brazil are discussed. Thirteen species are recorded for the first time in Northeastern Brazil (Pernambuco) on herbivore dung. Podospora appendiculata, P. australis, P. decipiens, P. globosa and P. pleiospora are reported for the first time in Brazil, while P. ostlingospora and P. prethopodalis are reported for the first time from South America. Descriptions, figures and a comparative table are provided, along with an identification key to all known species of the genus in Brazil. Key words – Ascomycota – coprophilous fungi – taxonomy Introduction Podospora Ces. is one of the most common coprophilous ascomycetes genera worldwide, rarely absent in any survey of fungi on herbivore dung (Doveri, 2008). It is characterized by dark coloured, non-stromatic perithecia, with coriaceous or pseudobombardioid peridium, vestiture varying from glabrous to tomentose, unitunicate, non-amyloid, 4- to multispored asci usually lacking an apical ring and transversely uniseptate two-celled ascospores, delimitating a head cell and a hyaline pedicel, frequently equipped with distinctly shaped gelatinous caudae (Lundqvist, 1972). -
Natural Toxins
Lecture Material - Food Safety 2013/2014 Inneke Hantoro FOOD AND TOXICITY: Natural Toxins Hazards in food • Physical: glass, stone, metal, wood, etc • Chemical: - natural toxins - residues - metals - toxins formed during food processing • Microbiological: pathogenic microorganisms (bacteria, viruses, parasites, etc) Foodborne Diseases Infections Intoxications Toxicoinfection Invasive Infection Chemical Poisonous Poisonous Microbial Other Neurotoxins Enterotoxins Poisoning Plant Animal Intoxications Tissues Tissues Intestinal Systemic Other Mucosa Tissues or Organs (Muscle, Mycotoxins Algal Toxins Bacterial Liver, Joints, (Fungal Toxins Fetus, Other) Toxins) Diarrhogenic Emetic Enterotoxins Neurotoxins Other 1 Natural Toxins • They are naturally present in plants & animals. • The long term ingestion of natural toxins in commonly eaten foods the risks to human health? • Usually, natural toxins are not acutely toxic, except in a few cases in animals. • Most of the natural toxins, particularly those occurring in plant-derived foods, induce adverse effects only after chronic ingestion or by allergic reactions. Risks of toxins in food • General toxicity (instant death or illness) • Carcinogenic • Mutagenic • Teratogenic • Endocrine disrupters (hormones) • Microbial pathogens Natural Toxins in Foods • Endogenous toxins of plant origin Toxic phenolic substances: flavonoids, tannins, coumarin, safrole, and myristicin Cyanogenic glycosides Glucosinolates Acetylcholinesterase inhibitors Biogenic amines Central stimulants • Natural contaminants Mixing of edible plants with toxic plants Contamination resulting from intake of toxic substances by animals Microbial toxins 2 Endogenous toxins of plant origin Flavonoids • A class of plant pigments that are widely present in human food, are the flavonoids. • These pigments are polyhydroxy-2-phenylbenzo-γ- pyrone derivatives, occurring as aglycones, glycosides and methyl ethers. A group of yellow pigments that occurs abundantly is the flavones. -
Molecular Systematics of the Sordariales: the Order and the Family Lasiosphaeriaceae Redefined
Mycologia, 96(2), 2004, pp. 368±387. q 2004 by The Mycological Society of America, Lawrence, KS 66044-8897 Molecular systematics of the Sordariales: the order and the family Lasiosphaeriaceae rede®ned Sabine M. Huhndorf1 other families outside the Sordariales and 22 addi- Botany Department, The Field Museum, 1400 S. Lake tional genera with differing morphologies subse- Shore Drive, Chicago, Illinois 60605-2496 quently are transferred out of the order. Two new Andrew N. Miller orders, Coniochaetales and Chaetosphaeriales, are recognized for the families Coniochaetaceae and Botany Department, The Field Museum, 1400 S. Lake Shore Drive, Chicago, Illinois 60605-2496 Chaetosphaeriaceae respectively. The Boliniaceae is University of Illinois at Chicago, Department of accepted in the Boliniales, and the Nitschkiaceae is Biological Sciences, Chicago, Illinois 60607-7060 accepted in the Coronophorales. Annulatascaceae and Cephalothecaceae are placed in Sordariomyce- Fernando A. FernaÂndez tidae inc. sed., and Batistiaceae is placed in the Euas- Botany Department, The Field Museum, 1400 S. Lake Shore Drive, Chicago, Illinois 60605-2496 comycetes inc. sed. Key words: Annulatascaceae, Batistiaceae, Bolini- aceae, Catabotrydaceae, Cephalothecaceae, Ceratos- Abstract: The Sordariales is a taxonomically diverse tomataceae, Chaetomiaceae, Coniochaetaceae, Hel- group that has contained from seven to 14 families minthosphaeriaceae, LSU nrDNA, Nitschkiaceae, in recent years. The largest family is the Lasiosphaer- Sordariaceae iaceae, which has contained between 33 and 53 gen- era, depending on the chosen classi®cation. To de- termine the af®nities and taxonomic placement of INTRODUCTION the Lasiosphaeriaceae and other families in the Sor- The Sordariales is one of the most taxonomically di- dariales, taxa representing every family in the Sor- verse groups within the Class Sordariomycetes (Phy- dariales and most of the genera in the Lasiosphaeri- lum Ascomycota, Subphylum Pezizomycotina, ®de aceae were targeted for phylogenetic analysis using Eriksson et al 2001). -
Toxins and Signalling Evelyne Benoit, Françoise Goudey-Perriere, P
Toxins and Signalling Evelyne Benoit, Françoise Goudey-Perriere, P. Marchot, Denis Servent To cite this version: Evelyne Benoit, Françoise Goudey-Perriere, P. Marchot, Denis Servent. Toxins and Signalling. SFET Publications, Châtenay-Malabry, France, pp.204, 2009. hal-00738643 HAL Id: hal-00738643 https://hal.archives-ouvertes.fr/hal-00738643 Submitted on 21 May 2020 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Collection Rencontres en Toxinologie © E. JOVER et al. TTooxxiinneess eett SSiiggnnaalliissaattiioonn -- TTooxxiinnss aanndd SSiiggnnaalllliinngg © B.J. LAVENTIE et al. Comité d’édition – Editorial committee : Evelyne BENOIT, Françoise GOUDEY-PERRIERE, Pascale MARCHOT, Denis SERVENT Société Française pour l'Etude des Toxines French Society of Toxinology Illustrations de couverture – Cover pictures : En haut – Top : Les effets intracellulaires multiples des toxines botuliques et de la toxine tétanique - The multiple intracellular effects of the BoNTs and TeNT. (Copyright Emmanuel JOVER, Fréderic DOUSSAU, Etienne LONCHAMP, Laetitia WIOLAND, Jean-Luc DUPONT, Jordi MOLGÓ, Michel POPOFF, Bernard POULAIN) En bas - Bottom : Structure tridimensionnelle de l’alpha-toxine staphylocoque - Tridimensional structure of staphylococcal alpha-toxin. (Copyright Benoit-Joseph LAVENTIE, Daniel KELLER, Emmanuel JOVER, Gilles PREVOST) Collection Rencontres en Toxinologie La collection « Rencontres en Toxinologie » est publiée à l’occasion des Colloques annuels « Rencontres en Toxinologie » organisés par la Société Française pour l’Etude des Toxines (SFET). -
Review of the Inhibition of Biological Activities of Food-Related Selected Toxins by Natural Compounds
Toxins 2013, 5, 743-775; doi:10.3390/toxins5040743 OPEN ACCESS toxins ISSN 2072-6651 www.mdpi.com/journal/toxins Review Review of the Inhibition of Biological Activities of Food-Related Selected Toxins by Natural Compounds Mendel Friedman 1,* and Reuven Rasooly 2 1 Produce Safety and Microbiology Research Unit, Agricultural Research Service, USDA, Albany, CA 94710, USA 2 Foodborne Contaminants Research Unit, Agricultural Research Service, USDA, Albany, CA 94710, USA; E-Mail: [email protected] * Author to whom correspondence should be addressed; E-Mail: [email protected]; Tel.: +1-510-559-5615; Fax: +1-51-559-6162. Received: 27 March 2013; in revised form: 5 April 2013 / Accepted: 16 April 2013 / Published: 23 April 2013 Abstract: There is a need to develop food-compatible conditions to alter the structures of fungal, bacterial, and plant toxins, thus transforming toxins to nontoxic molecules. The term ‘chemical genetics’ has been used to describe this approach. This overview attempts to survey and consolidate the widely scattered literature on the inhibition by natural compounds and plant extracts of the biological (toxicological) activity of the following food-related toxins: aflatoxin B1, fumonisins, and ochratoxin A produced by fungi; cholera toxin produced by Vibrio cholerae bacteria; Shiga toxins produced by E. coli bacteria; staphylococcal enterotoxins produced by Staphylococcus aureus bacteria; ricin produced by seeds of the castor plant Ricinus communis; and the glycoalkaloid α-chaconine synthesized in potato tubers and leaves. The reduction of biological activity has been achieved by one or more of the following approaches: inhibition of the release of the toxin into the environment, especially food; an alteration of the structural integrity of the toxin molecules; changes in the optimum microenvironment, especially pH, for toxin activity; and protection against adverse effects of the toxins in cells, animals, and humans (chemoprevention).