Authors: Pallavi Subhraveti Ron Caspi Peter Midford Peter D Karp An online version of this diagram is available at BioCyc.org. Biosynthetic pathways are positioned in the left of the cytoplasm, degradative pathways on the right, and reactions not assigned to any pathway are in the far right of the cytoplasm. Transporters and membrane proteins are shown on the membrane. Ingrid Keseler Periplasmic (where appropriate) and extracellular reactions and proteins may also be shown. Pathways are colored according to their cellular function. Gcf_001282665Cyc: Clostridiales bacterium mt11 Cellular Overview Connections between pathways are omitted for legibility. Anamika Kothari L-cystine L-djenkolate 3-O-L-lysyl-1-O- lanthionine phosphatidylglycerol phosphate phosphate [+ 3 more]

FliY MprF RS00840 PstB

3-O-L-lysyl-1-O- L-cystine phosphatidylglycerol L-djenkolate phosphate phosphate lanthionine [+ 3 more]

Glycolysis Amino Acid Degradation Detoxification Aminoacyl-tRNA Charging glutaminyl-tRNA gln an inactive N 4 -(β-N-acetyl- an N-terminal- a mature peptidoglycan sn-glycerol a CDP- a nascent a [protein]- a [protein]- (4R)-4-hydroxy- N,N'- an L-cysteinyl- biosynthesis via transamidation L-valine degradation I ribonucleoside a reduced KDGP a [protein]-L-lysine D-glucosaminyl) serotonin L-methionyl-L- glycolysis I (from glucose 6-phosphate) glycine cleavage L-proline degradation II L-glutamine 8-oxo-(d)GTP detoxification I SAM (meso-diaminopimelate diacylglycerol peptidoglycan L-glutamine L-glutamine 2-oxoglutarate diacetylchitobiose Pro arg L-histidine degradation I flavodoxin 3-phosphate [tRNA ] (reductive Stickland reaction) degradation I triphosphate containing) (meso-DAP -L-asparagine alanyl-[protein] glu a [glycine-cleavage reductase containing) D-glucopyranose 6-phosphate val chitin complex H protein] N 6 CDP-diacylglycerol-- bifunctional transglutaminase transglutaminase bifunctional glycine his gln dGTP GTP lytic transglycosylase N(4)-(beta-N- type I methionyl disaccharide Cys- -[(R)-lipoyl]-L-lysine pro NADH glycerol-3-phosphate 3- 4-hydroxy-2- domain-containing domain-containing 4-hydroxy-2- arginase: cleavage histidine Asp-tRNA(Asn) anaerobic domain-containing lytic transglycosylase acetylglucosaminyl) oxoglutarate aminopeptidase: deacetylase: tRNA(Pro) rocF glucose-6-phosphate glycine phosphatidyltransferase: oxoglutarate protein: protein: system ammonia- /Glu-tRNA(Gln) ribonucleoside- protein: domain-containing -L-asparaginase: aldolase/2- map chbG deacylase: : cleavage proline racemase: pgsA aldolase/2- BN2005_RS13960 BN2005_RS13960 gln an L-glutamyl- protein : hutH amidotransferase: 8-oxo-dGTP 8-oxo-GTP triphosphate BN2005_RS04355 protein: BN2005_RS13005 dehydro-3-deoxy- methionyl ybaK BN2005_RS02065 3-methyl-2- system BN2005_RS09450 dehydro-3-deoxy- transglutaminase transglutaminase chitin [tRNA Gln ] GcvH: gcvH urocanate gatB gatA gatC reductase endolytic CDP-diacylglycerol-- BN2005_RS04355 N(4)-(beta-N- phosphogluconate aminopeptidase: oxobutanoate protein 8-oxo-dGTP phosphogluconate domain-containing domain-containing disaccharide L-ornithine urea Asp-tRNA(Asn) [+ 2 isozymes] a PrdC protein with [+ 4 isozymes] activating transglycosylase glycerol-3-phosphate 3- endolytic acetylglucosaminyl) aldolase: eda BN2005_RS10550 deacetylase: Asp-tRNA(Asn) F6P GcvH: gcvH urocanate D-proline diphosphatase: aldolase: eda protein: protein: Pro /Glu-tRNA(Gln) 3-methyl-2- thiol/selenol residues glu protein: nrdG MltG: mltG phosphatidyltransferase: transglycosylase -L-asparaginase: chbG cys a tRNA amidotransferase: /Glu-tRNA(Gln) oxobutanoate [+ 2 isozymes]a [glycine-cleavage a [glycine-cleavage hydratase: BN2005_RS00400 pgsA BN2005_RS11000 BN2005_RS11000 6 MltG: mltG BN2005_RS16820 amidotransferase: 6 complex H protein] N - an N-terminal L- gatB gatA gatC class II fructose- dehydrogenase complex H protein] N BN2005_RS08335 8-oxo-GMP D-glyceraldehyde 8-oxo-dGMP an active a mature peptidoglycan 6 glyoxylate pyruvate met β gatB gatA gatC aminomethyldihydrolipoyl- D-proline reductase a flavodoxin a mature peptidoglycan pyruvate a protein with an a [protein] N - alanyl-[protein] N-acetyl- -D- [+ 4 isozymes] bisphosphatase: glpX 6-phosphofructokinase: subunit VorB: vorB -dihydrolipoyl-L-lysine 4-imidazolone- 5'-deoxyadenosine met ribonucleoside γ strand (non- CMP 1-(3-sn- 3-phosphate acetate a 5-phosphooxy- class II fructose- L-lysine (dithiol) protein with (L-alanyl- -D- a mature a nascent N 6 -(γ-glutamyl)- N-acetyl-β- [(5-hydroxy-1H- glucosaminyl- class II fructose- pfkA 5-propanoate semiquinone triphosphate phosphatidyl) ammonium L-glutamyl- bisphosphate aldolase: isobutanoyl-CoA PrdB: prdB glutamyl-meso-2,6- reducing terminus) peptidoglycan peptidoglycan L-lysine crosslink asp glucosaminylamine indol-3-yl)ethyl]- (1->4)-D- Gln DHAP bisphosphatase: glpX imidazolonepropionase: reductase -sn-glycerol [tRNA ] BN2005_RS12590 D-proline reductase diaminopimeloyl-D- with (L-alanyl- (meso-DAP L-glutamine glucosamine [+ 4 isozymes] BN2005_RS08325 alanine) tetrapeptide 3-phosphate γ-D-glutamyl- containing) with glycine (dithiol) proprotein Asp-tRNA(Asn) β-D-fructose 1,6-bisphosphate Degradation/ meso-2,6- GlcNAc terminus cleavage N-formimino- PrdA: prdA /Glu-tRNA(Gln) triose-phosphate Utilization/ diaminopimeloyl- system L-glutamate amidotransferase: isomerase: methylacrylyl-CoA Assimilation - Other D-alanine) protein gatB gatA gatC BN2005_RS12580 L-serine 5-aminopentanoate acetoacetate tetrapeptide triose-phosphate short-chain-enoyl- GcvH: gcvH degradation CoA hydratase: L-methionine degradation isomerase: glycine cleavage system (to acetyl CoA) an L-glutaminyl- BN2005_RS02070 degradation II sn-glycero-3- an N-terminal- an N-terminal- Gln BN2005_RS08990 aminomethyltransferase a peptidoglycan a nascent peptidoglycan a [bis(guanylyl (indol-3- N-β-aspartyl- [tRNA ] glu ser cob(II)inamide a purine β-aspartyl dipeptide coenzyme A MoO - 34 L-canavanine acetoacetate γ γ adenosylcobinamide 2 a cytidine tRNA charging (S)-3-hydroxy- GcvT: gcvT with (L-alanyl- -D- with (L-alanyl- -D- ATP molybdopterin) cys phospho-N- yl)pyruvate L-methionyl-L- ATP L-methionyl- L-arginine lys L-serine ribonucleoside molybdopterin Ile2 isobutanoyl-CoA met acetate CoA- glutamyl-meso-2,6- glutamyl-meso-2,6- (arachidonoyl) threonyl-[protein] glycyl-[protein] in tRNA ammonia- 5'-triphosphate cofactor D-glyceraldehyde 3-phosphate diaminopimeloyl-D- diaminopimeloyl-D- chaperone]- ethanolamine lyase, methionine beta-aspartyl- indolepyruvate beta-aspartyl- trp a tRNA Trp elongator tRNA Met met initiator tRNA Met met glu a tRNA glu subunit alpha: atoD alanine) tetrapeptide alanine) tetrapeptide L-cysteine arginase: iron-sulfur- gamma- acetoacetyl-CoA cob(I)yrinic acid bifunctional peptidase: ferredoxin type I methionyl type I methionyl peptidase: tRNA phe Phe L-threonine molybdenum cofactor rocF a tRNA type I glyceraldehyde- dependent: (2Z)-2-aminobut-lyase: megL a,c-diamide adenosylcobinamide glycerophosphodiester BN2005_RS09085 aminopeptidase: aminopeptidase: BN2005_RS09085 lysidine(34) Tyr Asn Leu Ala asp ser Cys Pro Ile Arg Thr His Val Gly (S)-3-hydroxy- glycine degradation guanylyltransferase: tyr a tRNA asn tRNA leu a tRNA a tRNA ala tRNA asp ser a tRNA cys a tRNA pro a tRNA ile a tRNA arg a tRNA thr a tRNA his a tRNA val a tRNA gly a tRNA 3-phosphate degradation II 2-enoate acetyl-CoA C- L,D-transpeptidase: adenosyltransferase: cysteine phosphodiesterase: map map synthetase lys a tRNA Lys tryptophan-- methionine--tRNA : methionine--tRNA ligase: glutamate--tRNA ligase: gln a tRNA Gln isobutanoate (reductive sdaAB sdaAA kinase/ beta-aspartyl- subunit alpha: BN2005_RS00745 beta- dehydrogenase: gap 2-aminoprop- acetyltransferase: BN2005_RS12605 BN2005_RS02050 desulfurase BN2005_RS08370 methionyl methionyl TilS: tilS tRNA ligase: trpS BN2005_RS13540 BN2005_RS13540 BN2005_RS17205 Stickland reaction) adenosylcobinamide- peptidase: BN2005_RS16625 aspartyl- phenylalanine- thr 2-enoate BN2005_RS16025 NifS: nifS aminopeptidase: aminopeptidase: L-canaline urea tyrosine--tRNA ligase: asparagine-- leucine--tRNA ligase: alanine--tRNA aspartate--tRNA serine--tRNA ligase: serS cysteine--tRNA ligase: proline--tRNA ligase: isoleucine--tRNA ligase: arginine--tRNA ligase: threonine--tRNA histidine--tRNA ligase: valine--tRNA ligase: tryptophan-- methionine--tRNA methionine--tRNA glutamate--tRNA ligase: glycine--tRNA ligase: -tRNA ligase: cob(I)yrinic acid phosphate iadA indolepyruvate adenylyl peptidase: L-threonine 3- gly L-asparagine a,c-diamide guanylyltransferase: cysteine desulfurase: BN2005_RS10550 BN2005_RS10550 a lysidine 34 BN2005_RS02035 lysine--tRNA ligase: lysS tRNA ligase: asnS BN2005_RS05945 ligase: alaS ligase: aspS serine--tRNA ligase: serS BN2005_RS11855 BN2005_RS11875 BN2005_RS11965 BN2005_RS12070 ligase: thrS BN2005_RS12150 BN2005_RS12270 tRNA ligase: trpS ligase: metG ligase: metG BN2005_RS11860 glyQ BN2005_RS05245 BN2005_RS12090 pheS 13-DPG acetyl-CoA anandamide sn-glycerol ferredoxin molybdenum iadA (S)-methylmalonate- dehydrogenase: glycine reductase: degradation I a nascent peptidoglycan Ile2 L-glutamine 2-iminobutanoate adenosyltransferase: cobU BN2005_RS04230 3-phosphate oxidoreductase cofactor in tRNA semialdehyde BN2005_RS05980 BN2005_RS09055 with L,D cross links D-ala BN2005_RS15080 a proteinogenic L-2-amino-3- 2-iminopropanoate degradation II (meso-diaminopimelate adenosyl- asp subunit alpha: iorA an N-terminal L- an N-terminal Tyr Lys Asn Leu Ala asp ser Cys Pro Ile Arg Thr His Val Trp Met Met Glu Gly Phe Gln [+ 2 isozymes] asn a [bis(guanylyl amino acid met met an L-tyrosyl-[tRNA ] an L-lysyl-[tRNA ] an L-asparaginyl-[tRNA ] an L-leucyl-[tRNA ] an L-alanyl-[tRNA ] an L-aspartyl-[tRNA ] an L-seryl-[tRNA ] an L-cysteinyl-[tRNA ] an L-prolyl-[tRNA ] an L-isoleucyl-[tRNA ] an L-arginyl-[tRNA ] an L-threonyl-[tRNA ] an L-histidyl-[tRNA ] an L-valyl-[tRNA ] an L-tryptophanyl-[tRNA ] an L-methionyl-[elongator tRNA ] an L-methionyl-[initiator tRNA ] an L-glutamyl-[tRNA ] a glycyl-[tRNA ] an L-phenylalanyl-[tRNA ] an L-glutaminyl-[tRNA ] phosphoglycerate oxobutanoate containing) cobinamide threonyl-[protein] glycyl-[protein] arg asp acetyl phosphate molybdopterin) kinase: pgk glycine C- gln asparaginase: adenosylcobinamide phosphate a purine ala triphosphate cofactor (indol-3 yl) acetyltransferase: NADPH- BN2005_RS04205 ribonucleoside acetate kinase: 2-oxobutanoate chaperone]-S- acetyl-CoA (S)-3-amino-2- hydrogencarbonate BN2005_RS09160 dependent asp 5'-diphosphate 3-phospho-D-glycerate BN2005_RS07710 sulfanyl-L-cysteine methylpropanoate pyruvate glutamate gly Amino Acid Biosynthesis Aromatic Compound Fatty Acid and Lipid Biosynthesis acetate synthase: 2,3-bisphosphoglycerate- Biosynthesis gltA a peptidoglycan dimer a peptidoglycan 3-benzyl-3,6 - a uracil 1939 an N-terminal- DNA combined 37 a ribonucleoside independent a 5,10- a uridine 34 cob(II)alamin DMAPP an adenosine oxidized Ala palmitate biosynthesis (type II fatty acid synthase) glu gly ATP with pentapeptide dimer (generic) bis(cysteinylglycine) glu a glycyl-[tRNA ] in 23S rRNA L-methionyl-L- with exogenous a protein L-lysine biosynthesis III chorismate biosynthesis I even iso-branched-chain fatty acid biosynthesis CDP-diacylglycerol phosphoglycerate C1 Compound Utilization and Assimilation methylenetetrahydrofolate in tRNA in tRNA diphosphate factor 420-1 23S rRNA L-leucine biosynthesis L-selenocysteine L-isoleucine L-glutamate biosynthesis I L-asparagine alanine biotin-carboxyl carrier stems (meso- - 6-(hydroxymethyl) adenosylcobalamin- seryl-[protein] DNA to form a ATP- biosynthesis V biosynthesis I protein assembly mutase: -diketopiperazine (uracil(1939)-C(5)) biosynthesis I (bacteria) biosynthesis II racemization D-erythrose diaminopimelate lytic transglycosylase dependent recombinationalHolliday dependent 3-methyl-2- BN2005_RS08985 formate assimilation into 5,10- -methyltransferase asp H O 4-phosphate an acetoacetyl-[acp] val a [biotin carboxyl- formate tRNA uridine-5- cob(I)yrinic acid containing) domain-containing tRNA (adenosine(37)-N6) ribonucleoside- F420-0--gamma- D-tyrosyl-tRNA(Tyr) type I methionyl junctionjunction protease oxobutanoate 2-methylbutanoate 2 3-deoxy-7- DHAP methylenetetrahydrofolate -dimethylallyltransferase deacylase: RlmD: rlmD aspartate kinase: 2-isopropylmalate sec asp ala carrier protein]-L-lysine oxidation to CO carboxymethylaminomethyl(34) a,c-diamide protein: membrane diphosphate glutamyl ligase: aminopeptidase: resolvase subunit ser a tRNA phosphoheptulonate 3-oxoacyl-[acyl- NAD(P)H- 2 BN2005_RS10080 synthase: Asp-tRNA(Asn) aspartate-- alanine 2-phospho-D-glycerate synthesis GTPase MnmE: mnmE adenosyltransferase: N-acetylmuramoyl- MiaA: miaA dipeptidase: reductase: BN2005_RS00540 BN2005_RS08075 23S rRNA map HslV: hslV synthase: aroF carrier-protein] dependent glycerol- biotin--[acetyl-CoA- formate BN2005_RS04355 resolution RuvX:of ruvX [+ 2 isozymes] BN2005_RS12955 (2S)-2- /Glu-tRNA(Gln) ammonia ligase: racemase: 3-deoxy- formate BN2005_RS15080 L-alanine BN2005_RS14130 BN2005_RS13955 (uracil(1939)-C(5)) (2S)-2- selenide reductase: fabG 3-phosphate carboxylase] ligase: formate-- tRNA uridine-5- endolytic F420-0--gamma- methionyl recombinational[+ 2 isozymes] a peptide L-aspartyl- methylbutanoyl- amidotransferase: BN2005_RS08180 alr D-arabino- formate amidase N 6 -(3-methylbut- -methyltransferase isopropylmalate serine--tRNA dehydrogenase: BN2005_RS01310 phosphopyruvate tetrahydrofolate carboxymethylaminomethyl(34) cob(I)yrinic acid transglycosylase vitamin B12- glutamyl ligase: aminopeptidase: junction 4-phosphate CoA gatB gatA gatC asn D-ala heptulosonate 3-oxoacyl-ACP Fatty Acid and Lipid Degradation dehydrogenase CwlD: cwlD 2-en-1-yl)- a tRNA Ala RlmD: rlmD selenide, ligase: serS 3-methyl-2-oxobutanoate BN2005_RS08010 a [biotin carboxyl- hydratase: eno ligase: synthesis MnmG: mnmG a,c-diamide MltG: mltG 3-benzyl-3,6 - dependent BN2005_RS10840 gly a 5- BN2005_RS10550 formation of two [+ 4 isozymes] 7-phosphate reductase adenosine 37 aspartate- water serine--tRNA 2-ketoisovalerate sn-glycerol carrier protein]-N subunit alpha: adenosyltransferase: bis(cysteinyl)- 6- gly ribonucleotide methyluracil 1939 intact strands FabG: fabG 10 BN2005_RS14715 ferredoxin 3-dehydroquinate 3-methyl-2- 3-phosphate 6 -biotinyl-L-lysine oleate β-oxidation an N - BN2005_RS17395 a peptidoglycan dimer L-alanyl-γ-D- in tRNA (hydroxymethyl) semialdehyde dikinase ligase: serS 2-oxoglutarate ammonium fatty acid β-oxidation I (generic) a 5-carboxymethylaminomethyluridine 34 BN2005_RS02050 GlcNAc-1,6- reductase: oxidized in 23S rRNA an N-terminal L-proline biosynthesis oxidoreductase: synthase: aroB oxobutanoate formyltetrahydrofolate CO a 7,8-dihydrofolate a lipid II -diketopiperazine dehydrogenase: SelD: selD a (3R)-3- glycerol-3- phosphoenolpyruvate 2 in tRNA with pentapeptide stem glutamyl-meso-2,6- anhydro-MurNAc- a 2'- BN2005_RS12030 factor 420-2 met L-seryl-[protein] 2-isopropylmaleate I (from L-glutamate) BN2005_RS16325 dehydrogenase BN2005_RS12210 hydroxybutanoyl-[acp] phosphate 1-O- oleate a (3Z)-alk-3- bifunctional 5,10- adenosylcobalamin (meso-diaminopimelate diaminopimeloyl- pentapeptide deoxyribonucleoside selenophosphate an L-seryl-[tRNA sec ] NADPH-dependent 3-dehydroquinate subunit VorB: vorB L-aspartate 4- (3S)-3-methyl-2- glycine biosynthesis I 3-hydroxyacyl- acyltransferase a [biotin carboxyl- enoyl-CoA methylenetetrahydrofolate triphosphate containing) D-alanyl-D-alanine 5'-diphosphate glu glutamate synthase: gltA phosphoenolpyruvate semialdehyde oxopentanoate type II 3- ACP isobutanoyl-CoA PlsY: plsY carrier-protein dimer]- pyruvate kinase: pyk dehydrogenase/5,10- glutamate 5- dehydroquinate FabZ: fabZ a 1-acyl-sn N 6 -biotinyl-L-lysine synthase: ppsA methenyltetrahydrofolate 4-hydroxy- (2R,3S)-3- L-seryl-tRNA(Sec) ser kinase: proB dehydratase: aroQ -glycerol 3- cyclohydrolase: a [ribosomal an N-terminal- (E)-4-hydroxy-3- tetrahydrodipicolinate isopropylmalate γ selenium glu serine quinoxaline-2- a [protein]- a [lipoyl-carrier phosphoenol a peptide with -L-glutamyl a (2E)-but-2-enoyl-[acp] phosphate oleoyl-CoA a (2E)-2- BN2005_RS05500 a sulfurated protein S12] 2-oxoglutarate diphosphate H O FAD a uracil in DNA L-methionyl-L- (R)-lipoate a reduced methylbut-2-en- 5-MTR-1-P synthase: transferase: hydroxymethyltransferase: pyruvate short-chain-enoyl- aryl-carrier protein carboxyl adenylate 2 L-threonine protein]-L-lysine superoxide dGDP pyruvate an N-terminal 5-phosphate 3-dehydroshikimate 1-acyl-sn-glycerol- enoyl-CoA [sulfur carrier] 89 rubredoxin ile uracil degradation a [carboxyl-carrier acyl-CoA a 5,10- L-aspartate cysteinyl-[protein] L-methionine 1-yl diphosphate S-methyl-5- BN2005_RS12215 BN2005_RS04665 BN2005_RS08030 a 4-methyl-3- 3-phosphate CoA hydratase: flavodoxin- (2S,4S)-4- glutamate-5- I (reductive) protein dimer]-N 6 - methenyltetrahydrofolate thioribose-1- gly shikimate oxopentanoyl-[acp] dehydrogenase: acyl-CoA BN2005_RS02070 a 2,3,4- 2-oxoglutarate FAD:protein FMN uracil-DNA lipoate-- dependent hydroxy-2,3,4,5- (2S)-2-isopropyl- semialdehyde acyltransferase: carboxybiotinyl-L-lysine inorganic phosphate an L-selenocysteinyl- uracil dehydrogenase: BN2005_RS15405 dehydrogenase: saturated (3R)-3- bifunctional 5,10- 30S ribosomal oxidoreductase: acyl carrier transferase: glycosylase: type I methionyl protein ligase: superoxide type I methionyl (E)-4-hydroxy- tetrahydrodipicolinate 3-oxosuccinate dehydrogenase: 3-oxoacyl-[acyl- BN2005_RS07050 diphosphatase: isomerase: sec aroE a 1,2-diacyl- (2E,9Z)- BN2005_RS15405 a 2,3,4- hydroxyacyl-CoA methylenetetrahydrofolate protein S12 protein: acpP aminopeptidase: reductase: pyruvate aminopeptidase: 3-methylbut- BN2005_RS16705 [tRNA ] L-homocysteine biosynthesis carrier-protein] a 2,3,4-saturated BN2005_RS11305 BN2005_RS11040 BN2005_RS04565 BN2005_RS02275 BN2005_RS11970 dihydrodipicolinate a butanoyl-[acp] sn-glycerol octadecenoyl-CoA saturated (3S)-3- dehydrogenase/5,10- methylthiotransferase acyl carrier map BN2005_RS02040 kinase: pyk map 2-enyl- S-methyl-5-mtnA L-homoserine shikimate reductase: fabG Respiration fatty acyl CoA 2-oxoglutarate uracil-DNA lipoate-- reductase: L-glutamate-5- 3-phosphate hydroxyacyl-CoA methenyltetrahydrofolate RimO: rimO protein: acpP sodium-translocating diphosphate thio-D-ribulose biosynthesis 5,6-dihydrouracil short-chain-enoyl- ferredoxin a [protein]-FMN- glycosylase: methionyl protein ligase: methionyl BN2005_RS05880 semialdehyde L-homoserine beta-ketoacyl- 3-oxoacyl-ACP phosphatidate fatty acid biosynthesis CoA hydratase: cyclohydrolase: pyrophosphatase: aminopeptidase: aminopeptidase: 2-C-methyl-D-synthase: ispG 1-phosphate 4-methyl-2- shikimate kinase: ACP synthase reductase 2-oxoisovalerate decarboxylation to isobutanoyl-CoA oxidoreductase BN2005_RS08960 AMP L-threonine BN2005_RS02280 BN2005_RS15290 an oxidized 4-hydroxy- cytidylyltransferase: initiation (type II) BN2005_RS02070 BN2005_RS05500 a [ribosomal a quinoxaline-2- BN2005_RS10550 pyruvate BN2005_RS10550 erythritol-2,4- oxopentanoate asp dihydropyrimidinase: BN2005_RS06750 II: fabF FabG: fabG an unsulfurated subunit gamma: rubredoxin tetrahydrodipicolinate hydA BN2005_RS07360 an [apo BCAA (S)-3-hydroxy-(9Z) a 5,10- 5'-deoxyadenosine met protein S12]-3- carboxyl-[aryl- dGTP cyclodiphosphate aspartate kinase: shikimate 3- acetyl-CoA a 2,3,4-saturated a 2,3,4-saturated [sulfur carrier] BN2005_RS07015 AMP an apyrimidinic uracil a [lipoyl-carrier reductase: a (3R)-3-hydroxy-4- a CDP- dehydrogenase -octadecenoyl-CoA coenzyme A methylenetetrahydrofolate methylsulfanyl- carrier protein] 6 BN2005_RS10080 a 3-oxohexanoyl-[acp] H + an N-terminal L- protein]-N -[(R BN2005_RS12220 (S)-1-pyrroline- 3-ureidopropanoate phosphate methylpentanoyl-[acp] E2 protein] N 6 fatty acyl CoA 3-oxoacyl-CoA L-aspartate 89 phosphate site in DNA [+ 2 isozymes] diacylglycerol 3-methyl-2- met cysteinyl-[protein] )-lipoyl]-L-lysine met a peptide 5-carboxylate O-acetyl-L- -lipoyl-L-lysine a reduced (S)-2,3,4,5- L-aspartyl- 3-phosphoshikimate 1- 3-oxoacyl-[acyl- 3-hydroxyacyl- oxobutanoate CO H + succinyl-CoA leu hydrogen sulfide 3-methyl-2- 2 ferredoxin [iron- tetrahydrodipicolinate pyrroline-5- 4-phosphate homoserine carboxyvinyltransferase: carrier-protein] malonyl-CoA dehydrogenase ACP dehydratase oxobutanoate a 2,3,4-saturated sulfur] cluster carboxylate aroA reductase: fabG FabZ: fabZ subunit VorB: vorB 3-oxo-(9Z)- fatty acid aspartate- L-cysteine biosynthesis I 5-enolpyruvoyl- ACP S- dehydrogenase reductase: O-acetylhomoserine octadecenoyl-CoA semialdehyde β 3-oxoacyl-ACP a (2E)-4-methylpent- CDP-diacylglycerol malonyltransferase: subunit VorB: vorB α proC -alanine shikimate 3- acetyl-CoA 34 a [DNA]-3'- a 5'-phospho- a [Co(II) proline (1S,2R)-1- lysine within an N-terminal- 5-deoxy- - aminocarboxypropyltransferase/ reductase biosynthesis II fabD a 5,10- a 2-thiouridine a 2-oxo + a [peptide] with N- a D-aspartyl- phosphoenol α ε dehydrogenase: phosphate 2-enoyl-[acp] dihydrolipoyl NAD A(H) succinate (R)-lipoate L-methionyl-L- NADH D-ribose 1- L- -amino- - cysteine synthase: ser methylenetetrahydrofolate in tRNA carboxylate hydroxyl [DNA] betaine-specific ser C-(indol-3- gcv protein H β asp pyruvate pro BN2005_RS12210 chorismate FabG: fabG terminal aspartate [tRNA ] dADP keto-pimelate L-glutamate BN2005_RS10095 dehydrogenase: an [apo BCAA an [apo BCAA dehydrogenase corrinoid protein] yl)glycerol valyl-[protein] phosphateS-methyl-5- serine O- synthase: DHAP a malonyl-[acp] biosynthesis III L-aspartate 4- a (3R)-3- lpdA dehydrogenase E2 protein] N 6 -S-[2- (7Z)-hexadecenoyl-CoA 3-phosphate thioribose-1- diaminopimelate acetyltransferase: cysE NAD(P)H- Nucleoside and Nucleotide Degradation tRNA uridine-5- 2-oxoacid:ferredoxin NAD- ADP-forming lipoate-- NAD(+) semialdehyde aroC hydroxyhexanoyl-[acp] 6 DUF4445 domain- D-tyrosyl-tRNA(Tyr) dehydrogenase: L-alanine dependent glycerol- beta-ketoacyl-ACP E2 protein] N - methylpropanoyl]dihydrolipoyl- carboxymethylaminomethyl(34) dependent succinate--CoA protein ligase: beta-aspartyl- type I methionyl diphosphatase: phosphate 2-oxoglutarate L-homocysteine O-acetyl-L-serine acyl-CoA oxidoreductase containing protein: tryptophan deacylase: BN2005_RS09600 biosynthesis III homoserine chorismate 3-hydroxyacyl- a 5-methylhexanoyl-[acp] 3-phosphate synthase III: fabH dihydrolipoyl-L-lysine L-lysine synthesis GTPase MnmE: mnmE DNA ligase ligase: sucC sucD BN2005_RS11970 peptidase: pyruvate aminopeptidase: nudC isomerase: NADPH- dehydrogenase: purine nucleobases degradation II (anaerobic) subunit beta: BN2005_RS13055 synthase BN2005_RS08075 dehydrogenase: O-acetylhomoserine ACP dehydratase dehydrogenase: superpathway of pyrimidine thymine degradation LigA: ligA BN2005_RS09085 kinase: pyk map 5-deoxy-D-mtnA meso- dependent BN2005_RS15405 tRNA uridine-5- BN2005_RS07010 DUF4445 domain- subunit lipoate-- cys BN2005_RS10085 aminocarboxypropyltransferase/ FabZ: fabZ beta-ketoacyl- BN2005_RS08010 deoxyribonucleosides degradation beta-aspartyl- methionyl reduced β- ribulose 1- diaminopimelate glutamate sn-glycerol an acetoacetyl-[acp] (2E,7Z)- carboxymethylaminomethyl(34) 2-oxoacid:ferredoxin containing protein: beta: trpB protein ligase: cysteine desulfurase: cysteine synthase: ACP synthase thymine phosphate succinyl-CoA peptidase: iadA aminopeptidase: nicotinamide D- phosphate synthase: hexadecenoyl-CoA purine 2'-deoxycytidine synthesis enzyme MnmG: mnmG oxidoreductase BN2005_RS15290 asp diaminopimelate BN2005_RS04230 L-homoserine a (2E)-hex-2-enoyl-[acp] II: fabF 3-phosphate 3-methyl-2- [DNA] NMN BN2005_RS02390 ADP tRNA D-aspartate BN2005_RS10550 AMP gltA BN2005_RS10095 ATP biosynthesis subunit gamma: D-glyceraldehyde pyruvate ribonucleotide decarboxylase: lysA glycerol-3- oxobutanoate short-chain-enoyl- AMP dATP cysteine desulfurase cysteine synthase A: cysK a 6-methyl-3- cytidine deaminase: 5,6-dihydrothymine BN2005_RS11300 3-phosphate trp a [glycine-cleavage glu phosphate 1-O- dehydrogenase CoA hydratase: a 5-aminomethyl-2- a [Co(I) proline NifS: nifS oxoheptanoyl-[acp] a 7,8-dihydrofolate A complex H protein] N 6 asp a peptide an N-terminal subunit VorB: vorB BN2005_RS02070 xanthine BN2005_RS13165 dihydropyrimidinase: thiouridine 34 in tRNA betaine-specific lys ala cys acyltransferase ADP -[(R)-lipoyl]-L-lysine met L-valyl-[protein] 3-oxoacyl-[acyl- PlsY: plsY (S)-3-hydroxy-(7Z) dehydrogenase: [+ 2 isozymes] thymidine hydA a reduced corrinoid protein] ATP synthase an acyl-CoA CO H + carrier-protein] a 1-acyl-sn acyl-[acyl- -hexadecenoyl-CoA BN2005_RS12750 2 ferredoxin [iron- a hexanoyl-[acp] subunit J: pyrimidine- 3-(carbamoylamino)- reductase: fabG -glycerol 3- carrier protein] 2'-deoxyuridine sulfur] cluster BN2005_RS12110 hypoxanthine nucleoside 2-methylpropanoate beta-ketoacyl- 3-oxoacyl-ACP phosphate thioesterase pathway Macromolecule Modification [+ 2 isozymes] 8-hydroxypurine phosphorylase: ACP synthase reductase 1-acyl-sn-glycerol- a fatty acyl-[acyl- UDP-N-acetyl-α-D-muramoyl- a [ThiI sulfur- a 1-acyl-2- an insertion a [protein]-L- an unstable Nucleoside and Nucleotide Biosynthesis ATP 3-oxo-(7Z)- BN2005_RS06930 S-methyl-5'- di-trans,octa-cis- UDP-N-acetyl-α-D-muramoyl- an (S)-2- a nucleoside a ribonucleoside an L-asparaginyl- D-sedoheptulose II: fabF FabG: fabG 3-phosphate carrier protein] tRNA-uridine 2-thiolation L-alanyl-γ-D-glutamyl-L- D-alanyl-D-alanine a uracil in tRNA carrier protein]- glu a (6S)-5- arachidonoyl- sequence glutamate-O 5 RecA filament- acyl-ACP hexadecenoyl-CoA xanthine pyrimidine- thioadenosine undecaprenyl phosphate L-alanyl-γ-D-glutamyl-L-lysine halocarboxylate triphosphate RNA formate triphosphate [tRNA Asn ] 1,7-bisphosphate acyltransferase: and selenation (bacteria) thymine lysyl-D-alanyl-D-alanine S-sulfanyl- formyltetrahydrofolate sn-glycerol element IS30 -methyl-ester DNA complex UMP biosynthesis III a 3-oxooctanoyl-[acp] a (3R)-3-hydroxy-6- BN2005_RS07050 thioesterase: dehydrogenase: nucleoside (R)-3-amino-2- degradation III DDE-type integrase/ DNA superpathway of guanosine nucleotides de novo biosynthesis II superpathway of adenosine 5-aminoimidazole ribonucleotide biosynthesis I adenine and superpathway of pyrimidine methylheptanoyl-[acp] methylpropanoate S-methyl-5'- L-cysteine 3-phosphate CTP repair pyrimidine deoxyribonucleotides de novo biosynthesis II a 1,2-diacyl- BN2005_RS09960 BN2005_RS12750 phosphorylase: UDP-N-acetylmuramoyl- HAD family transposase/ class II nucleotides de novo biosynthesis II adenosine salvage III nucleobases salvage cys thioadenosine phospho-N- DNA-directed anaerobic aminoacyl-tRNA protein 3-oxoacyl-[acyl- 3-hydroxyacyl- sn-glycerol a fatty acid BN2005_RS06930 tripeptide--D-alanyl- tRNA 4- bifunctional : recombinase: chemotaxis fructose-1,6- acetylmuramoyl- phosphatidate RNA polymerase ribonucleoside hydrolase: RecO: gln hydrogencarbonate formate PRPP uracil carrier-protein] ACP dehydratase 3-phosphate (5Z)-tetradecenoyl-CoA D- alanine ligase: thiouridine(8) folylpolyglutamate BN2005_RS14085 BN2005_RS04710 response bisphosphate IMP UTP phosphatidate cysteine desulfurase: S-methyl-5'- pentapeptide- synthase/ cytidylyltransferase: subunit alpha: triphosphate BN2005_RS02105 regulator protein- a stabilizedrecO IMP adenine uracil reductase: fabG FabZ: fabZ 6,8- BN2005_RS08950 synthase [+ 5 isozymes] an insertion[+ 14 isozymes] aldolase: fba asp amidophosphoribosyltransferase: cytidylyltransferase: BN2005_RS04230 acyl-CoA thioinosine transferase: dihydrofolate BN2005_RS07360 BN2005_RS11600 reductase: glutamate RecA filament- CTP purine-nucleoside phosphoribosyltransferase: 3-oxoacyl-ACP a (2E)-6-methylhept- dihydroxypurine UDP-N-acetylmuramoyl- ThiI: thiI sequence IS30 IMP anaerobic BN2005_RS14745 BN2005_RS07360 cysteine dehydrogenase: uracil 2-deoxy-α-D- BN2005_RS05785 synthase: [+ 2 isozymes] BN2005_RS14065 methylesterase: DNA complex phosphorylase: BN2005_RS16045 reductase 2-enoyl-[acp] S-methyl-5'- tripeptide--D-alanyl-D- with integrated D-erythrose dehydrogenase: anaerobic ribonucleoside desulfurase BN2005_RS15405 ribose 1-phosphate BN2005_RS12265 a (2R)-2- a CDP-1-acyl- asn tRNA Asn cheB DHAP 5-phospho-β- gly BN2005_RS06925 bifunctional pyr operon FabG: fabG a CDP- xanthine thioinosine alanine ligase: murF a [ThiI sulfur- a 4-thiouracil a halide anion transposon 4-phosphate guaB ribonucleoside triphosphate NifS: nifS undecaprenyl-diphospho-N- hydroxy fatty acid 2-arachidonoyl- a 2'- carbamoyl asp D-ribosylamine adenosine transcriptional regulator/uracil diacylglycerol an [L-cysteine (2E,5Z)- dehydrogenase: phosphopentomutase: phosphorylase: UMP carrier protein]- in tRNA triphosphate reductase: a (3R)-3- acetylmuramoyl-L-alanyl-γ-D- glycerol RNA deoxyribonucleoside phosphate phosphoribosyltransferase desulfurase]-S- tetradecenoyl-CoA BN2005_RS12750 BN2005_RS09685 BN2005_RS14785 α L-cysteine a (6S)-5- a [protein]-α- XMP reductase: BN2005_RS14065 hydroxyoctanoyl-[acp] glutamyl-L-lysyl- D-alanyl-D-alanine UDP-N-acetyl- -D-muramoyl-L-alanyl- 5'-triphosphate MeOH adenylo-succinate phosphoribosylamine- adenosine PyrR: pyrR γ formyltetrahydrofolate L-glutamate BN2005_RS14065 sulfanyl-L-cysteine guanine 2-deoxy-D-ribose -D-glutamyl-L-lysyl-D-alanyl-D-alanine -glycine ligase: purD deaminase: UMP 3-hydroxyacyl- a 6-methylheptanoyl-[acp] short-chain-enoyl- 5-MTR-1-P aspartate urate 5-phosphate glutamine- BN2005_RS14225 ACP dehydratase CoA hydratase: carbamoyltransferase dCTP UMP kinase: fatty acid elongation -- saturated α hydrolyzing GMP FabZ: fabZ beta-ketoacyl- (3E,5Z)-tetradeca- BN2005_RS02070 UDP-N-acetyl- -D- an (R)-2- D-sedoheptulose a [protein]-L- regulatory subunit: GAR BN2005_RS07375 deoxyribose- hydrogen selenide di-trans,octa-cis- MoO - menadione NADH H + an alkylated DNA a tripeptide H O a DNA segment Se-methyl-L- synthase: guaA a [TusA sulfur- guanine O-acetyl-L-serine muramoyl-L-alanyl-γ-D- 2 2 1-phosphate BN2005_RS12495 dCTP deaminase: pyrimidine deoxyribonucleotides de novo biosynthesis III inosine ACP synthase 3,5-dienoyl-CoA xanthine undecaprenyl phosphate GTP halocarboxylate GTP selenocysteine ATP roseoflavin methionine UDP a (2E)-oct-2-enoyl-[acp] carrier protein]-S- (S)-3-hydroxy-(5Z) deaminase: phosphate glutamyl-L-lysyl-D-alanine molybdopterin molybdopterin DDE-type integrase/ peptide- BN2005_RS11955 phosphoribosylglycinamide II: fabF an acetoacetyl-[acp] dehydrogenase: 5'-phosphate aspartate GMP AMP sulfanyl-L-cysteine -tetradecenoyl-CoA guaD aldolase: cofactor transposase/ methionine carbamoyltransferase: UDP CTP formyltransferase: purine-nucleoside an 8-methyl-3- BN2005_RS12750 deoC NADH-quinone HAD family DNA-3- peptidase class II O-acetylhomoserine phospho-N- recombinase: methionine (S)-S-oxide pyrB dUTP vitamin B12-dependent BN2005_RS14735 phosphorylase: oxononanoyl-[acp] oxidoreductase hydrolase: methyladenine T: pepT GTPase fructose-1,6- guanylate kinase: (3E,5Z)- aminocarboxypropyltransferase/ acetylmuramoyl- molybdenum cofactor BN2005_RS04710 gamma- bifunctional reductase adenylate kinase: ribonucleotide BN2005_RS06925 UTP D-glyceraldehyde guanylyltransferase: subunit NuoE: nuoE BN2005_RS14085 glycosylase: peptidase ObgE: obgE bisphosphate MsrA: msrA BN2005_RS04755 dUTP CDP FGAR 3-oxoacyl-[acyl- a [TusD sulfur- tetradecadienoate acetaldehyde cysteine synthase: pentapeptide- recombinase lyase: megL riboflavin kinase/ a protein-L- BN2005_RS11635 reductase: 3-oxo-(5Z)- 3-phosphate BN2005_RS00745 NADH-quinone [+ 5 isozymes] BN2005_RS01285 T: pepT [+ 5 isozymes] aldolase: fba N-carbamoyl- guanylate kinase: diphosphatase: CTP synthase: an octanoyl-[acp] carrier-protein] carrier protein]-S- BN2005_RS10095 transferase: RecA: recA FAD synthetase: methionine- H + RS12110 H + BN2005_RS12030 vitamin B12-dependent hypoxanthine a 3-oxoacyl-[acp] tetradecenoyl-CoA acetaldehyde oxidoreductase a DNA segment L-aspartate BN2005_RS07835 BN2005_RS07275 phosphoribosylformylglycinamidine BN2005_RS16210 reductase: fabG sulfanyl-L-cysteine cysteine synthase A: cysK BN2005_RS05785 BN2005_RS07300 (S)-S-oxide ribonucleotide 3-oxoacyl-ACP xanthine subunit NuoE: nuoE a DNA containing + in reverse ADP nucleoside triphosphate adenosylcobalamin- synthase: BN2005_RS14755 beta-ketoacyl- 3-oxoacyl-ACP dehydrogenase bis(guanylyl a (2R)-2- an alkylated phosphate H methaneselenol pyruvate D-erythrose dihydroorotase: reductase: xanthine CTP reductase a halide anion an apurinic/ a proteinogenic a dipeptide GDP orientation DHAP GDP pyrophosphohydrolase: dependent ACP synthase reductase (acetylating): undecaprenyl-diphospho-N molybdopterin) hydroxy fatty acid nucleobase roseoflavin BN2005_RS12490 ribonucleoside- BN2005_RS12030 FGAM phosphoribosyltransferase: FabG: fabG BN2005_RS03230 acetate UMP apyrimidinic site amino acid F0F1 ATP adenosylcobalamin- vitamin B12- mazG II: fabF FabG: fabG L-selenocysteine -acetylmuramoyl-L-alanyl-γ- cofactor adenine H + H + BN2005_RS08515 a [TusE sulfur (3Z)-dodec- NAD + menadiol synthase dependent dependent diphosphate reductase: adenosylcobalamin- 3-oxoacyl-[acyl- D-glutamyl-L-lysyl- D-alanine dinucleotide (S)-dihydroorotate dUMP AIR synthase: [+ 2 isozymes] a (3R)-3-hydroxy-8- 34 carrier protein]-S 3-enoyl-CoA acetyl-CoA BN2005_RS13955 dependent a 3-oxodecanoyl-[acp] beta-ketoacyl- carrier-protein] a uridine in tRNA 5-ureidoimidazole- vitamin B12- adenosylcobalamin- ribonucleoside- ribonucleotide BN2005_RS14585 xanthine and methylnonanoyl-[acp] -sulfanylcysteine diphosphate reductase: dUDP ribonucleoside- ACP synthase reductase: fabG 4-carboxylate dihydroorotate dependent dependent phosphoribosylformylglycinamidine IMP xanthosine salvage 3-oxoacyl-[acyl- an N 6 -L- an sn-glycero-3- N-acetyl-β-D- (R)-2- N-acetyl-α- a protein-L- V-type ATP diphosphate reductase: 3-hydroxyacyl- II: fabF a D-tyrosyl- + + ribonucleotide reductase: BN2005_RS12030 a 2,3,4-saturated a (3R)-3-hydroxyacyl- tRNA 2- a sulfurated 37 2-oxobutanoate F6P a peptide with a a RNA-DNA hybrid H H dehydrogenase ribonucleoside- cyclo-ligase: BN2005_RS14740 carrier-protein] threonylcarbamoyladenine phospho-N-(acyl) glucosaminyl-(1 Tyr hydroxyglutaryl- D-muramoyl- methionine- synthase BN2005_RS13955 dTMP BN2005_RS13955 ACP dehydratase fatty acyl-[acp] [acyl-carrier protein] thiouridine(34) (2E)-dodec- [sulfur carrier] ATP leader sequence [tRNA ] GTP electron GTP reductase: diphosphate adenosylcobalamin- reductase: fabG 3-hydroxyacyl- in tRNA ammonium hydrogencarbonate ethanolamine -> 4)-N-acetyl- CoA L-alanine(1-) (R)-S-oxide AIR xanthosine FabZ: fabZ synthase 2-enoyl-CoA 2-hydroxyglutaryl- anaerobic peptide- transfer subunit: BN2005_RS12030 reductase: vitamin B12- dependent dTMP kinase: dUTP dCDP ACP dehydratase purine nucleotides degradation II (aerobic) β-D-muramate 3-oxoacyl-ACP a (2E)-8-methylnon- MnmA: mnmA short-chain-enoyl- 5-aminoimidazole- 2-ketoisovalerate fructose-6- CoA dehydratase: ribonucleoside methionine BN2005_RS12480 adenosylcobalamin- BN2005_RS13955 dependent ribonucleoside- BN2005_RS03460 dUTP diphosphatase: purine-nucleoside FabZ: fabZ ammonium glycerophosphodiester D-tyrosyl-tRNA(Tyr) ribonuclease HII: N-acetylmuramoyl- Ca 2+ RS02470 Ca 2+ reductase 2-enoyl-[acp] CoA hydratase: 4-carboxylate tRNA (N(6)-L- ferredoxin phosphate signal BN2005_RS04185 triphosphate (R)-S-oxide dihydroorotate dependent vitamin B12- ribonucleotide diphosphate ATP BN2005_RS07275 superpathway of pyrimidine deoxyribonucleoside salvage phosphorylase: FabG: fabG threonylcarbamoyladenosine(37) carbamate phosphodiesterase: peptidase I: lepB beta-N- deacylase: BN2005_RS07625 L-alanine reductase anaerobic dTDP a 2-thiouridine 34 BN2005_RS02070 oxidoreductase: aldolase: fsa 2-hydroxyglutaryl- reductase: dehydrogenase: ribonucleoside- dependent reductase: reductase: nucleoside triphosphate BN2005_RS06925 AMP -C(2))- methylthiotransferase kinase: arcC BN2005_RS08370 [+ 3 isozymes] acetylhexosaminidase: BN2005_RS08075 amidase MsrB: msrB ribonucleoside dCTP xanthine a (3R)-3- in tRNA (S)-3- BN2005_RS16325 fructose-6- CoA dehydratase: BN2005_RS14065 BN2005_RS12475 diphosphate ribonucleotide BN2005_RS12030 BN2005_RS13955 pyrophosphohydrolase: 2'-deoxycytidine MtaB: mtaB nagZ CwlD: cwlD a [protein]-L- triphosphate hydroxydecanoyl-[acp] hydroxydodecanoyl-CoA [+ 2 isozymes] phosphate aldolase: BN2005_RS16065 Ca 2+ RS00230 Ca 2+ PRPP reductase: reductase: mazG xanthine tRNA uridine-5- 5'/3'- DNA a nucleoside 5'- (E)-glutaconyl- dGTP methionine orotate reductase: anaerobic a 2,3,4-saturated a trans-2-enoyl- 4-aminoimidazole BN2005_RS03715 sn-glycerol an N- dADP dTTP phosphoribosyltransferase: 3-hydroxyacyl- an 8-methylnonanoyl- carboxymethylaminomethyl(34) nucleotidase Tyr monophosphate BN2005_RS14065 BN2005_RS13955 BN2005_RS12030 ribonucleoside cytidine deaminase: fatty acyl-[acp] [acyl-carrier protein] a 2-methylsulfanyl-N 6 -L- carbamoyl a leader sequence a peptide N-acetyl-D- D-tyrosine a tRNA CoA N-acetyl-D- dUMP [acyl-carrier protein] synthesis GTPase MnmE: mnmE SurE: surE a reduced 3-phosphate acylethanolamine GlcNAc BN2005_RS13165 BN2005_RS08515 ACP dehydratase 37 5'-deoxyadenosine an unsulfurated phosphate orotate triphosphate adenine salvage threonylcarbamoyladenine met CO propanoyl-CoA H + muramate ala muramate FAD-dependent FabZ: fabZ tRNA uridine-5- [sulfur carrier] 2 ferredoxin [iron- D-glyceraldehyde 2+ 2+ phosphoribosyltransferase: reductase: [+ 2 isozymes] dCMP beta-ketoacyl- in tRNA dihydroxyacetone Cd CadA Cd thymidylate synthase: carboxymethylaminomethyl(34) 3-oxododecanoyl-CoA adenosine GMP IMP sulfur] cluster 3-phosphate BN2005_RS12470 dGDP BN2005_RS14065 XMP ACP synthase BN2005_RS11845 2'-deoxyuridine (d)CMP kinase: a (2E)-dec-2-enoyl-[acp] II: fabF synthesis enzyme MnmG: mnmG 3,5-dihydro-4H- guanine and adenine BN2005_RS07045 imidazol-4-one a 5-carboxymethylaminomethyl- adenosine 5'/3'- IMP 6 orotidine 5'- dTMP a 1o-methyl-3- N -(3-methylbut- RNase III mRNA a 2,3,4-saturated cobalt- 2251 L-fuculose (3R,5S)-3- Cd 2+ CadA Cd 2+ guanine and guanosine salvage 34 deaminase: nucleotidase dehydrogenase: an acyl-[acyl- a D-aminoacyl- an N-modified guanosine thymidine kinase: dCDP oxoundecanoyl-[acp] 2-thiouridine in tRNA a sulfurated [sulfur carrier] 2-en-1-yl)- glu a 5-formiminotetrahydrofolate processing acetate 1-phosphate hydroxy-1- phosphate guanosine salvage II dATP dTMP kinase: BN2005_RS14225 SurE: surE guaB carrier protein] fatty acyl CoA [tRNA] aminoacyl-[tRNA] precorrin-5A in 23S rRNA ATP ATP BN2005_RS09205 adenosine 37 in tRNA 23S rRNA BN2005_RS03460 adenine 3-oxoacyl-[acyl- decanoyl-CoA biotin pyrroline-5- orotidine-5'- guanosine thymidine (guanosine(2251) anaerobic deaminase: ade pyrimidine ribonucleosides salvage I carrier-protein] N-formimino- L-fuculose- carboxylatepyrroline-5- phosphate purine-nucleoside dTDP dUMP a decanoyl-[acyl-carrier protein] acyl-CoA inosine guanosine XMP acetate CoA- cobalt- -2'-O)- ribonucleoside dGTP guanosine dCTP reductase: fabG a 5-aminomethyl-2- glycine tRNA (N6-isopentenyl glutamate phosphate Mini-ribonuclease 3: D-tyrosyl-tRNA(Tyr) aminoacyl-tRNA phosphate aldolase: carboxylate decarboxylase: phosphorylase: adenine thymidine kinase: dehydrogenase: transferase precorrin 5A methyltransferase biotin--[acetyl-CoA- triphosphate cytidine thiouridine 34 in tRNA adenosine(37)-C2)- formimidoyltransferase: ftcD acyltransferase BN2005_RS11850 deacylase: hydrolase: BN2005_RS14795 reductase: pyrF BN2005_RS06925 deaminase: ade AMP BN2005_RS09205 beta-ketoacyl- 3-oxoacyl-ACP BN2005_RS15405 purine-nucleoside purine-nucleoside 5'/3'- subunit hydrolase: RlmB: rlmB carboxylase] ligase: reductase: methylthiotransferase glutamate PlsX: plsX ribonuclease III: BN2005_RS08075 BN2005_RS02105 2-O- proC CMP guanine ACP synthase reductase phosphorylase: phosphorylase: nucleotidase alpha: atoD cbiG BN2005_RS01310 BN2005_RS14065 UMP dTTP uridine kinase: cytidine deaminase: MiaB: miaB formimidoyltransferase: ftcD 2251 Hyp phosphorylation II: fabF FabG: fabG (2E)-dec-2-enoyl-CoA BN2005_RS06925 BN2005_RS06925 SurE: surE BN2005_RS07685 methylguanosine dATP guanine BN2005_RS06090 BN2005_RS13165 in 23S rRNA DHAP (S)-lactaldehyde CMP xanthine hypoxanthine a (3R)-3-hydroxy-10- a 5-methylaminomethyl- short-chain-enoyl- a 5-formiminotetrahydrofolate a 2,3,4-saturated an uncharged an N-modified an uncharged cobalt- dTMP [+ 2 isozymes] a 3-oxododecanoyl-[acp] hypoxanthine guanine xanthosine N 6 -(3-methylbut-2-en- acyl-carrier protein an acyl phosphate RNase III acetyl-CoA a D-amino acid acetaldehyde biotinyl-5'- xanthine (d)CMP kinase: phosphoribosyltransferase: CMP methylundecanoyl-[acp] 2-thiouridine 34 in tRNA CoA hydratase: 5'-deoxyadenosine an unsulfurated N-formimino- a tetrahydrofolate an mRNA fragment fatty acid tRNA amino acid tRNA precorrin-5B BN2005_RS08515 xanthine 1-yl)-2-(methylsulfanyl) met processing adenylate phosphoribosyltransferase: BN2005_RS07045 dTMP kinase: uridine 3-oxoacyl-[acyl- BN2005_RS02070 37 [sulfur carrier] L-glutamate CDP phosphoribosyltransferase: 3-hydroxyacyl- adenosine in tRNA mRNA BN2005_RS08515 [+ 2 isozymes] BN2005_RS03460 carrier-protein] (S)-3- BN2005_RS08515 uridine kinase: ACP dehydratase xanthine guanine purine-nucleoside [+ 2 isozymes] reductase: fabG hydroxydecanoyl-CoA a 5,10- dTDP BN2005_RS06090 FabZ: fabZ a 5-methylaminomethyl- 4 GMP [+ 2 isozymes] methenyltetrahydrofolate dehydrogenase: deaminase: phosphorylase: a [2-oxoglutarate- a (6S)-5- a [protein]- an O - a peptide with methyl β-D-glucoside a [protein] N- a double-stranded a [protein]-L- a negatively 3-oxoacyl-ACP a (2E)-10-methylundec- 2-(S-geranyl) BN2005_RS12750 guaD BN2005_RS06925 a sulfurated terminal-formyl- an L-cysteinyl- an unfolded UMP SAM dehydrogenase glu methylthymine DL-allothreonine a tRNA precursor an N-terminal 6-phosphate oligonucleotide proline (ω = 180) Cys supercoiled DNA GMP CTP reductase thiouridine 34 in tRNA [sulfur carrier] formyltetrahydrofolate L-cysteine [tRNA ] protein IMP 2-enoyl-[acp] E2 protein] N 6 - in DNA Xaa-L-proline L-methionine bifunctional peptidylprolyl DNA FabG: fabG bifunctional 5,10- bifunctional 5,10- dTTP octanoyl-L-lysine oligoribonuclease/ isomerase: topoisomerase 3-oxodecanoyl-CoA methylenetetrahydrofolate methylenetetrahydrofolate xanthine 6-phospho-beta- chaperonin a (3R)-3- methylated-DNA-- serine leucyl peptide PAP phosphatase BN2005_RS14165 aminoacyl-tRNA III: topB dehydrogenase/5,10- dehydrogenase/5,10- glutamate ribonuclease Z: glucosidase: GroEL: groL hydroxydodecanoyl-[acp] a 5-methylaminomethyl- methenyltetrahydrofolate methenyltetrahydrofolate xanthine lipoyl formimidoyltransferase: ftcD [protein]-cysteine S- hydroxymethyltransferase: aminopeptidase: deformylase: NrnA: peptidylprolyl hydrolase: type I DNA 2-(Se-phospho) synthase: BN2005_RS16480 BN2005_RS12660 BN2005_RS07310 3-hydroxyacyl- cyclohydrolase: cyclohydrolase: dehydrogenase: glutamate methyltransferase: BN2005_RS08030 BN2005_RS14190 def isomerase: BN2005_RS02105 topoisomerase: a protein an 10-methylundecanoyl-[acp] selenouridine 34 in tRNA lipA [+ 2 isozymes] a nucleoside 5'- ACP dehydratase BN2005_RS05500 BN2005_RS05500 BN2005_RS12750 formimidoyltransferase: ftcD BN2005_RS09130 BN2005_RS09225 topA Cofactor, Carrier, and Vitamin Biosynthesis monophosphate a [protein]-L- FabZ: fabZ octanoyl-CoA a [2-oxoglutarate a single-stranded a peptide with a relaxed DNA beta-ketoacyl- urate a proteinogenic β an N-terminal L- proline (ω = 0) an N 10 - a 5,10- 5'-deoxyadenosine dehydrogenase an unsulfurated a [protein]-S- acetaldehyde gly mature tRNA oligoribonucleotide an N-terminal -D-glucose formate cys a tRNA Cys [2Fe-2S] iron-sulfur ACP synthase acyl-CoA met a thymine in DNA amino acid MeOH methionyl-[protein] adenosylcobinamide-GDP lipoate salvage II folate transformations III (E. coli) 2-methyladeninyl adenosylcobamide phosphopantothenate biosynthesis I a (2E)-dodec-2-enoyl-[acp] a 5-methylaminomethyl- formyltetrahydrofolate methylenetetrahydrofolate 6 [sulfur carrier] N-formyl- a tetrahydrofolate methyl-L-cysteine 6-phosphate cluster biosynthesis adenosylcobalamin II: fabF dehydrogenase: E2 protein] N L-proline salvage from cobinamide I salvage from cobalamin biosynthesis from adenosylcobinamide-GDP 2-selenouridine 34 serine -lipoyl-L-lysine L-glutamate a [lipoyl-carrier a 12-methyl-3- BN2005_RS15405 3-methyl-2- a 5,10- in tRNA hydroxymethyltransferase: L-cysteine desulfurase protein]-N 6 -[(R a tetrahydrofolate oxotridecanoyl-[acp] cob(II)inamide cob(I)alamin 2-methyladenine oxobutanoate methylenetetrahydrofolate (2E)-oct-2-enoyl-CoA BN2005_RS08030 superpathway of purine deoxyribonucleosides degradation )-lipoyl]-L-lysine an L-1- an O 6 - an N-formyl-L- N-acetyl-D- cob(I)yrinic acid 3-oxoacyl-[acyl- an L-lysyl- a peptidoglycan a [protein]- a hypoxanthine D-ribulose a SpoIVB cysteine desulfurase: formate phosphatidyl- methylguanine methionylaminoacyl- glycerophosphoserine leukotriene-D4 galactosamine DNA with lesion glu ala ser a,c-diamide nicotinate-nucleotide-- 3-methyl-2-oxobutanoate carrier-protein] short-chain-enoyl- Lys L-cysteine in DNA 1-phosphate peptidase BN2005_RS04230 a dodecanoyl-[acp] ser [tRNA ] sn-glycerol 6-phosphate excinuclease adenosyltransferase: (R)-lipoate dimethylbenzimidazole hydroxymethyltransferase: reductase: fabG tRNA processing CoA hydratase: formate in DNA tRNA L-serine Precursor cysteine cob(II)alamin 2'-deoxyguanosine ABC subunit UvrA: SpoIVB BN2005_RS15080 phosphoribosyltransferase: panB 3-oxoacyl-ACP BN2005_RS02070 dehydrogenase N-acetylmuramoyl- DNA-deoxyinosine membrane L-fuculose- ammonia-lyase, desulfurase L-serine methylated-DNA-- glycerophosphodiester BN2005_RS04395 peptidase: cob(I)yrinic acid lipoate-- cobT beta-ketoacyl- acyl-ACP reductase a polycistronic (S)-3- subunit alpha: 2'-deoxyadenosine bifunctional L-alanine peptide glycosylase: dipeptidase: N-acetylglucosamine- phosphate aldolase: glutamate-- iron-sulfur- NifS: nifS cob(I)yrinic acid ammonia- [protein]-cysteine S- phosphodiesterase: spoIVB a,c-diamide protein ligase: ACP synthase thioesterase: FabG: fabG tRNA precursor hydroxyoctanoyl-CoA BN2005_RS17395 lysylphosphatidylglycerol amidase deformylase: BN2005_RS02925 BN2005_RS14130 6-phosphate excinuclease ABC: BN2005_RS14795 cysteine ligase: dependent: a,c-diamide 2-dehydropantoate lyase, methyltransferase: BN2005_RS08370 a SpoIVB an S-sulfanyl-[L- adenosyltransferase: BN2005_RS15290 2-methyladenine II: fabF BN2005_RS09960 purine-nucleoside flippase/synthetase CwlD: cwlD def deacetylase: nagA uvrC uvrA uvrB BN2005_RS00705 sdaAB sdaAA adenosyltransferase: serine a (3R)-3-hydroxy-12- CO iron-sulfur- BN2005_RS09130 peptidase lipoate-- adenosylcobinamide- ribotide phosphate 2 adenosine phosphorylase: MprF: mprF DNA without lesion cysteine desulfurase] [corrinoid BN2005_RS02050 BN2005_RS15080 2-dehydropantoate dependent: pyruvate protein ligase: a 7,8-dihydrofolate hydroxymethyltransferase:a 5-methyltetrahydrofolate GDP methyltridecanoyl-[acp] deaminase: BN2005_RS06925 sn-glycerol an apurinic site glycolaldehyde adenosyltranferase]- cob(I)yrinic acid 2-reductase: sdaAB sdaAA ditrans,octacis- a peptidoglycan ser leukotriene-E4 gly D-galactosamine DHAP γ-L-glutamyl- BN2005_RS11970 BN2005_RS08030 glycine cleavage system a 3-oxotetradecanoyl-[acp] laurate 3-hydroxyacyl- purine-nucleoside BN2005_RS14225 a [protein]-S- formate a L-methionylaminoacyl- 3-phosphate within DNA hypoxanthine acetate cob(II)inamide a,c-diamide protein GcvH: gcvH BN2005_RS15000 a tRNA precursor a tRNA precursor 3-oxooctanoyl-CoA 2-aminoprop- phosphorylase: 3-O-L-lysyl-1-O- undecaprenyldiphospho- pentapeptide a guanine in DNA tRNA 6-phosphate D-alanine adenosylcobinamide- ACP dehydratase Lys methyl-L-cysteine adenosyltransferase: [(R)- β-alanine with a 5' with a 5' 2-enoate BN2005_RS06925 purine-nucleoside phosphatidylglycerol a tRNA N-acetyl-(N- an S-sulfanyl-[cysteine lipoyl]adenylate glycine cleavage system bifunctional 5,10- GDP (R)-pantoate 3-oxoacyl-[acyl- FabZ: fabZ acetylglucosaminyl)muramate BN2005_RS02050 aminomethyltransferase a (6S)-5-formyltetrahydrofolate extension and extension and a superpathway of pyrimidine phosphorylase: desulfurase]-[disordered- lipoate-- methylenetetrahydrofolate ribazoletransferase: carrier-protein] 2'-deoxyinosine [corrinoid cob(II)alamin- GcvT: gcvT a (2E)-12-methyltridec- a long 3' trailer short 3' extension ribonucleosides degradation BN2005_RS06925 form scaffold protein ligase: dehydrogenase/5,10-5-formyltetrahydrofolate cobS reductase: fabG [corrinoid benzimidazolyl adenosylcobamide lauroyl-CoA 2-enoyl-[acp] ribonuclease a thiocarboxylated 38- a [protein] protein] complex adenosyltranferase]- methenyltetrahydrofolate hexanoyl-CoA cytidine 2-deoxy-α-D- a nascent peptidoglycan a uridine 34 an (R)-2- a D-tryptophanyl- a uridine D-ribulose adenosyltranferase] BN2005_RS11970 cyclo-ligase: biosynthesis from adenosylcobinamide-GDP 3-oxoacyl-ACP P protein methanethiol O-acetyl-L- γ [SAMP] C- glycerophosphoglycerol 3'-ketolactose acetyl-CoA propanoyl-CoA a protein (L-serine/L- pentanoate cob(I)inamide Coα-[α-(2- cytidine deaminase: 2-iminopropanoate gly with (L-alanyl- -D-glutamyl- halocarboxylate Trp 40 in tRNA 5-phosphate cyclohydrolase: BN2005_RS10835 reductase component: ribose 1-phosphate homoserine in tRNA [tRNA ] cob(I)yrinic acid lipoate-- methyladenin-9-yl)]-Co ribonuclease PH: acyl-CoA BN2005_RS13165 meso-2,6-diaminopimeloyl- terminal glycine RluA family ribulose-phosphate ATP-dependent zinc threonine) butyrate BN2005_RS05500 (R)-pantothenate FabG: fabG rnpA a,c-diamide protein ligase: a 5,10-methylenetetrahydrofolate a 5,10-methenyltetrahydrofolate β-adenosylcobamide benzimidazole BN2005_RS14560 dehydrogenase: [+ 2 isozymes] phosphopentomutase: D-alanine) tetrapeptide pseudouridine 3-epimerase: metalloprotease phosphatestage II kinase: buk a [cysteine desulfurase]- a tRNA precursor HAD family glycerophosphodiester beta- acetyl-CoA C- adenosyltransferase: cob(I)alamin- BN2005_RS15290 5'-phosphate type III pantothenate a (3R)-3- BN2005_RS15405 uridine BN2005_RS09685 O-acetylhomoserine tRNA 2- D-tyrosyl-tRNA(Tyr) synthase: BN2005_RS04005 FtsH: hflB sporulation butyrate S-sulfanyl-[disordered- nicotinate-nucleotide-- a 12-methyltridecanoyl-[acp] a tRNA with a short L,D-transpeptidase: hydrolase: phosphodiesterase: galactosidase acetyltransferase: BN2005_RS15080 [corrinoid a [glycine- bifunctional 5,10- kinase: hydroxytetradecanoyl-[acp] 2-deoxy-D-ribose aminocarboxypropyltransferase/ thiouridine(34) deacylase: BN2005_RS13855 ribulose-phosphate protein kinase: buk form scaffold dimethylbenzimidazole precursor with 3' extension (2E)-hexenoyl-CoA pyrimidine-nucleoside BN2005_RS12605 BN2005_RS14085 BN2005_RS08370 subunit BN2005_RS16025 ATP-dependent zinc adenosyltranferase] cleavage complex methylenetetrahydrofolate BN2005_RS02240 3-hydroxyacyl- pyruvate 5-phosphate cysteine synthase: synthase BN2005_RS08075 [+ 3 isozymes] 3-epimerase: E: spoIIE pentanoyl cob(I)yrinic acid 6 phosphoribosyltransferase: a 5' extension phosphorylase: alpha: ebgA 38- metalloprotease protein] complex cob(I)yrinic acid H protein] N -[(R dehydrogenase/5,10- BN2005_RS10095 MnmA: mnmA [+ 5 isozymes] a pseudouridine a [protein] Ser/Thr phosphate cysteine desulfurase: a,c-diamide Coα-[α-(2- (R)-4'- cobT ACP dehydratase beta-ketoacyl- acyl-ACP short-chain-enoyl- BN2005_RS06930 BN2005_RS07775 FtsH: hflB a,c-diamide )-lipoyl]-L-lysine molybdenum methenyltetrahydrofolate ribonuclease PH: 3-oxopentanoyl- 40 in tRNA D-xylulose BN2005_RS04230 adenosyltransferase: methyladenin-7-yl)]-Co phosphopantothenate benzimidazole FabZ: fabZ ACP synthase thioesterase: ribonuclease CoA hydratase: deoxyribose- a nascent peptidoglycan glycerol sn-glycerol 3-keto-β-D- 34 5-phosphate a peptide adenosyltransferase: cofactor sulfulylation cyclohydrolase: BN2005_RS14560 uracil phosphate a [SAMP] C- a 2-thiouridine an (S)-2- 3-phosphate Trp D-glucopyranose CoA cysteine BN2005_RS02050 β-adenosylcobamide adenosylcobinamide- ribotide II: fabF BN2005_RS09960 P protein BN2005_RS02070 acetate with (L-alanyl-γ-D-glutamyl- D-ala a halide anion D-tryptophan a tRNA galactose BN2005_RS15080 (eukaryotes) BN2005_RS05500 a (2E)-tetradec-2-enoyl-[acp] aldolase: deoC met terminal glycine in tRNA hydroxycarboxylate desulfurase MoO - GDP phosphate component: (S)-3- acetyl-CoA meso-2,6-diaminopimeloyl- adenosylcobinamide a [lipoyl-carrier 3 NifS: nifS cob(I)yrinic acid 10 rnpA glycine) tetrapeptide 6 molybdopterin an N -formyltetrahydrofolate a 14-methyl-3- hydroxyhexanoyl-CoA an S-sulfanyl-[cysteine a,c-diamide protein]-N -[(R 12-methyltridecanoate bifunctional enoyl- cofactor molybdenum adenosylcobinamide- oxopentadecanoyl-[acp] acetaldehyde D-glyceraldehyde 3-phosphate desulfurase]-S- bifunctional adenosyltransferase: )-lipoyl]-L-lysine 5,6-dihydrouracil CoA hydratase/ cofactor sulfurase: tetrahydrofolate biosynthesis GDP a [methyl-(Co(III) β an [RNA]-3'- 2''-O-acetyl- a [lipoyl-carrier sulfanyl-[disordered- adenosylcobinamide BN2005_RS02050 coenzyme A biosynthesis 3-oxoacyl-[acyl- stearate biosynthesis phosphate acetaldehyde a [protein]- a DNA methyl an (S)-2- sn-glycero-3- -D-fructofuranose D-ribose 5- Mo(O) (S)-BN2005_RS00805 ribazoletransferase: 5-methoxybenzimidazole NaMN coenzyme M adenosylcobinamide RNA 6 kinase/ 2 I (prokaryotic) dihydropyrimidinase: tetramethylammonium- L-cysteine phosphotriester phosphoethanolamine 1-phosphate ribonucleoside- ADP-ribose protein]-N -[(R) a protein phosphate form scaffold adenosylcob(III) molybdopterin (7,8-dihydropterin- cobS a myristoyl-[acp] carrier-protein] II (bacteria and plants) an uncharged acetyltransferase: dehydrogenase halocarboxylate Na + RS08960 Na + adenosylcobinamide- 3-oxohexanoyl-CoA specific corrinoid protein] bifunctional 2',3'- -dihydrolipoyl]- ribose 5- protein] complex alamin-[corrinoid (R)-4'- 6-yl)methyl reductase: fabG hydA BN2005_RS12040 (acetylating): phosphate cofactor 4-aminobenzoate tRNA adenosylcobinamide cyclophosphate L-lysine Clp protease ClpP: phosphate adenosyltranferase] phosphopantothenate diphosphate Coα-[α- beta-ketoacyl- 3-oxoacyl-ACP BN2005_RS03230 purine ribonucleosides degradation nicotinate-nucleotide-- methylated-DNA-- glycerophosphodiester class II fructose- RNA 2',3'-cyclic O-acetyl-ADP- dihydrolipoyl guanylyltransferase: bifunctional a palmitoyl-[acp] acetyl-CoA C- 3-ureidopropanoate methylcobamide- HAD family kinase/ ribonuclease PH: BN2005_RS14375 isomerase cob(I)yrinic acid (benzimidazolyl)]-Co ACP synthase reductase beta-ketoacyl- acetyl phosphate dimethylbenzimidazole [protein]-cysteine S- phosphodiesterase: 1,6-bisphosphate phosphodiesterase: ribose deacetylase: dehydrogenase: cobU phosphopantothenoylcysteine acetyltransferase: -CoM hydrolase: adenosylcobinamide- BN2005_RS14560 [+ 2 isozymes] B: rpiB a,c-diamide β-adenosylcobamide II: fabF FabG: fabG ACP synthase acetyl-CoA phosphoribosyltransferase: methyltransferase: BN2005_RS08370 aldolase: fba thpR BN2005_RS08200 lpdA D-ribulose a [cysteine decarboxylase/ BN2005_RS16025 methyltransferase: BN2005_RS14085 phosphate an [RNA]-3'- a [lipoyl-carrier adenosyl-cobinamide adenosyltransferase: 5'-phosphate II: fabF acetate kinase: adenosine cobT BN2005_RS09130 6 a peptide 5-phosphate desulfurase]-(S- phosphopantothenate-- a (3R)-3-hydroxy-14- lipoprotein posttranslational BN2005_RS13075 [+ 5 isozymes] guanylyltransferase: ribunucleoside- protein]-N -[(R sulfanyl) -[disordered- phosphate BN2005_RS15080 7,8- a 3-oxohexadecanoyl-[acp] a 3-oxooctadecanoyl-[acp] butanoyl-CoA BN2005_RS07710 2 methylpentadecanoyl-[acp] modification cobU a nucleoside 2'-phosphate ADP-D-ribose )-lipoyl]-L-lysine (R)-4'- cysteine ligase CoaBC: coaBC dihydropteroate adenosine ethanolamine sn-glycerol RNA DHAP D-glyceraldehyde acetate form scaffold bifunctional cob(I)yrinic acid thiamine diphosphate salvage II acyl-CoA β-alanine a [Co(I) a [protein]-S- adenosyl-cobinamide diphosphate phosphopantothenoyl- α α 3-oxoacyl-[acyl- 3-hydroxyacyl- 3-oxoacyl-[acyl- a [prolipoprotein]- acetate deaminase: 5-methoxybenzimidazole nicotinate methyl-CoM [DNA] an (S)-2- 3-phosphate protein] complex a,c-diamide bifunctional Co -[ - dehydrogenase: tetramethylammonium- a halide anion phosphate adenosylcobinamide L-cysteine carrier-protein] ACP dehydratase carrier-protein] L-cysteine BN2005_RS14225 ribotide phosphate methyl-L-cysteine hydroxycarboxylate kinase/ adenosyltransferase: 4-amino-2-methyl-5- folylpolyglutamate (benzimidazolyl)]-Co BN2005_RS15405 specific corrinoid protein] bifunctional bis(guanylyl molybdopterin) β reductase: fabG FabZ: fabZ reductase: fabG adenosylcobinamide- BN2005_RS02050 pyrimidinemethanol synthase/ -adenosylcobamide prolipoprotein phosphopantothenoylcysteine cofactor sulfurylation dihydrofolate 3-oxoacyl-ACP a (2E)-14-methylpentadec- 3-oxoacyl-ACP diacylglyceryl crotonyl-CoA xanthosine adenosine inosine guanosine a [cysteine desulfurase]- phosphate bifunctional decarboxylase/ adeninyl adenosylcobamide biosynthesis XXLG xyloglucan 3''-O-acetyl- adenosylcobalamin reductase reductase 4-methyl-2- a single- + guanylyltransferase: hydroxymethylpyrimidine synthase: 2-enoyl-[acp] transferase: UTP and CTP dephosphorylation I 5-hydroxybenzimidazole NaMN isobutanal acetate pentanoyl-CoA A NADPH H an adenine in DNA chorismate [scaffold protein- phosphopantothenate-- cys BN2005_RS12265 from adenosylcobinamide-GDP FabG: fabG FabG: fabG BN2005_RS05755 short-chain-enoyl- oxopentanoate oligosaccharide stranded RNA D-lysine ADP-ribose GTP repressor LexA (2Fe-2S)] complex cobU kinase/ cysteine ligase CoaBC: coaBC CoA hydratase: DNA adenine phosphomethylpyrimidine a (3R)-3- a [prolipoprotein]- purine-nucleoside purine-nucleoside purine-nucleoside purine-nucleoside D-lysine 5,6- adenosylcobinamide- 7,8-dihydrofolate a (3R)-3- BN2005_RS02070 UTP methylase: transcriptional chorismate kinase: thiD cysteine desulfurase: 5-methylbenzimidazolyl adenosylcobamide hydroxyhexadecanoyl-[acp] S-1,2-diacyl-sn- phosphorylase: phosphorylase: phosphorylase: phosphorylase: nicotinate-nucleotide-- 2-ketoisovalerate beta- acetaldehyde polyribonucleotide acetate CoA- NADPH aminomutase O-acetyl-ADP- GDP 4'-phosphopantetheine monoglutamate adenine hydroxyoctadecanoyl-[acp] BN2005_RS02990 diguanylate cyclase: repressor mutase: aroH BN2005_RS04230 biosynthesis from adenosylcobinamide-GDP glyceryl-L-cysteine (S)-3- BN2005_RS06925 BN2005_RS06925 BN2005_RS06925 BN2005_RS06925 dimethylbenzimidazole ferredoxin galactosidase dehydrogenase nucleotidyltransferase: transferase dehydrogenase subunit alpha: ribose deacetylase: 3-hydroxyacyl- 3-hydroxyacyl- CTP synthase: DNA adenine BN2005_RS08355 LexA: lexA a [co-chaperone]- HMP-P pantetheine- cysteine a 14-methylpentadecanoyl-[acp] hydroxybutanoyl-CoA phosphoribosyltransferase: oxidoreductase: subunit (acetylating): BN2005_RS07290 subunit NamA: namA BN2005_RS03815 BN2005_RS08200 nicotinate-nucleotide-- 5-methylbenzimidazole ACP dehydratase ACP dehydratase signal BN2005_RS16210 methylase: (2R,5S)-2,5- cleaved prephenate [scaffold protein- phosphate desulfurase α-D-ribose- cobT BN2005_RS16325 alpha: ebgA BN2005_RS03230 alpha: atoD c-di-GMP bifunctional 5-(2-hydroxyethyl) dimethylbenzimidazole FabZ: fabZ FabZ: fabZ peptidase UDP BN2005_RS02995 diaminohexanoate repressor LexA (2Fe-2S)] complex adenylyltransferase: NifS: nifS acyl-ACP 1-phosphate 6 -4-methylthiazole a 7,8-dihydrofolate phosphoribosyltransferase: nicotinate-nucleotide-- CTP a single- an N -methyladenine ADP-D-ribose hydroxymethylpyrimidine coaD an [L-cysteine thioesterase: II: lspA pyrimidine deoxyribonucleotides Aromatic Compound XXXG xyloglucan a nucleoside A(H2) NADP + acetate kinase/ cobT dimethylbenzimidazole a (2E)-hexadec-2-enoyl-[acp] a (2E)-octadec-2-enoyl-[acp] phosphopentomutase: 3-methylbutanoyl- a reduced D-galactopyranose stranded RNA in DNA hydroxyethylthiazole desulfurase]-S- BN2005_RS09960 acetoacetyl-CoA dephosphorylation Degradation 5-hydroxybenzimidazole nicotinate CO H + oligosaccharide isobutanoyl-CoA NADH H + diphosphate acetyl-CoA pentanoate 3'-dephospho- phosphoribosyltransferase: an (S-diacyl- BN2005_RS09685 2 ferredoxin [iron- phosphomethylpyrimidine kinase: thiM sulfanyl-L-cysteine a lipoprotein nucleoside triphosphate ribotide phosphate CoA a [chaperone-ATP]- molybdopterin biosynthesis CoA adenine ribotide cobT sn-glyceryl) UMP sulfur] cluster kinase: thiD cysteine desulfurase: 14-methylpentadecanoate signal peptide acetyl-CoA C- CDP pyrophosphohydrolase: D-ribose 5- gallate degradation [co-chaperone]- 4-methyl-5-(2- dephospho- adenosylcobinamide- phosphate -L-cysteinyl- BN2005_RS04230 adenosylcobinamide- 5-methylbenzimidazole acetyltransferase: 5'/3'- mazG phosphate III (anaerobic) [scaffold protein- HMP-PP phosphooxyethyl) CoA kinase: bis(guanylyl a tetrahydrofolate GDP [apolipoprotein] cysteine ribotide phosphate BN2005_RS16025 nucleotidase dCTP dCMP a ring-opened 7- 2503 XLLG xyloglucan 34 a DNA containing (2Fe-2S)] complex cys thiazole GDP adenine a [protein]-S- a uridine a mismatched BN2005_RS04350 desulfurase molybdopterin) a palmitoyl-[acp] a stearoyl-[acp] SurE: surE gallate methylguanine oligosaccharide an apurinic/ uroporphyrinogen-I A ammonium H O DHAP roseoflavin precorrin-6B GTP adenosylcobinamide- in 23S rRNA sulfanyl-L-cysteine in tRNA a type IV prepilin 2 DNA base pair a protein NifS: nifS cofactor acetyl-CoA CMP in DNA apyrimidinic site uroporphyrinogen DNA mismatch NAD(P)H- bifunctional cysteine desulfurase: ATP thiamine phosphate coenzyme A GDP adenosylcobinamide- a peptide uridine dUTP diphosphatase: precorrin-6A a [bis(guanylyl acyl-ACP acyl-ACP an N-acyl-(S- Secondary Metabolite Degradation decarboxylase: repair protein MutL: dependent glycerol- riboflavin kinase/ BN2005_RS04230 synthase: ribazoletransferase: GDP 5'/3'- BN2005_RS07275 23S rRNA beta- tRNA 2- endopeptidase reductase: GTP 3',8- molybdopterin) thioesterase: thioesterase: diacyl-sn-glyceryl) pyrogallol BN2005_RS13065 hydroxylamine BN2005_RS05905 3-phosphate FAD synthetase: a [chaperone- cysteine BN2005_RS01745 cobS ribazoletransferase: nucleotidase nucleoside triphosphate formamidopyrimidine- (adenine(2503)-C(2) galactosidase thiouridine(34) endonuclease La: lon cobK an [2Fe-2S] cyclase cofactor [bis-MGD cofactor BN2005_RS09960 BN2005_RS09960 -L-cysteinyl- anhydromuropeptides recycling I prepilin peptidase: reductase: hcp [+ 2 isozymes] dehydrogenase: BN2005_RS07300 ADP]-[disordered- desulfurase cobS SurE: surE pyrophosphohydrolase: DNA glycosylase: )-methyltransferase subunit synthase III: nth uroporphyrinogen a properly cluster protein MoaA: moaA chaperone]-S- chaperone]- α α [lipoprotein] BN2005_RS06680 BN2005_RS08010 roseoflavin precorrin-6A form scaffold NifS: nifS (8S)-3',8-cyclo-7,8- thiamine Co -[ -(adenin-9-yl)]- stearate mazG BN2005_RS08620 RlmN: rlmN alpha: ebgA MnmA: mnmA decarboxylase: matched a peptide sulfanyl-L-cysteine bis-MGD β α α palmitate cytidine GlcNAc-1,6- sn-glycerol 5'-phosphate protein] complex an [L-cysteine a carboxy-adenylated dihydroguanosine phosphate Co -adenosylcobamide Co -[ -(5- dUTP dUMP BN2005_RS02365 DNA base pair methylbenzimidazolyl)]- anhMurNAc- 3-phosphate desulfurase]-S- [small subunit of 5'-triphosphate adenosylcobalamin biosynthesis from adenosylcobinamide-GDP I 5'-phosphate a [DNA]- 2,6-diamino-4- XXXG xyloglucan a 3'-terminal a 5'-phospho- coproporphyrinogen I hydroxylamine β L-Ala-γ-D-Glu- phloroglucinol a 5'-phospho- 2503 34 a cleaved type sulfanyl-L-cysteine molybdopterin synthase] Co -adenosylcobamide nucleotide- hydroxy-5-(N-methyl) 4-oxo-2-pentenal a 2-methyladenine D-galactopyranose a [protein]- a 2-thiouridine unsaturated sugar [DNA] a peptide cyclic pyranopterin DAP-D-Ala [DNA] 5'-deoxyadenosine met oligosaccharide IV prepilin 5'-phosphate lipoate salvage I queuosine 5-hydroxy-CTP 5-hydroxy-CMP 3'-phosphate formamidopyrimidine in 23S rRNA L-cysteine in tRNA an [Fe-S cluster monophosphate 5,6-dimethylbenzimidazole sulfo-bis(guanylyl Amine and Polyamine Degradation palmitoyl-CoA stearoyl-CoA biosynthesis I (de novo) biosynthesis synthase thiamine molybdopterin) folate polyglutamylation Coα-[α-(adenin-7-yl)]- N-acetylmuramoyl- MoaC: moaC diphosphate nicotinate-nucleotide-- chaperone]-ATP cofactor Coβ-adenosylcobamide (R)-lipoate preQ L-alanine a thiocarboxylated dimethylbenzimidazole Coα-[α-(5- 0 superpathway of N-acetylglucosamine, dihydrophloroglucinol a 7,8-dihydro- 3-methyl-2- XLXG xyloglucan D-cellobiose 527 a supercoiled UTP cyclic pyranopterin lipoate-- amidase a [DNA]-3'- an N-acylated- an acyl-CoA H O chitin a guanine a [protein]- a double [small subunit of a tetrahydrofolate N-acetylmannosamine and N- 8-oxoguanine oligosaccharide 2 phosphate phosphoribosyltransferase: methylbenzimidazolyl)]- protein ligase: CwlD: cwlD oxobutanoate 6'-phosphate hydroxyl in 16S rRNA duplex DNA L-arginine anaerobic stranded DNA molybdopterin synthase] β acetylneuraminate degradation in DNA D-amino acid 16S rRNA UvrD-helicase cobT Co -adenosylcobamide BN2005_RS15290 Tetrapyrrole Biosynthesis protein ribonucleoside preQ N-acetylneuraminate β γ (guanine(527)-N(7) domain-containing DNA: serine bifunctional formate-- 1 N-acetyl- -D- L-alanyl- -D- beta- beta-N- arginine kinase: triphosphate thiamine diphosphate α-ribazole 5'-phosphate molybdenum lipoate-- 2-ketoisovalerate 6-phospho-beta- exodeoxyribonuclease acyl-CoA hydrolase: )-methyltransferase protein: gyrA gyrB adenosylcobinamide-GDP hydroxymethyltransferase: folylpolyglutamate tetrahydrofolate N-acetylneuraminate glucosamine-1,6- glutamyl-meso-2,6- 3-hydroxy-5- formamidopyrimidine- galactosidase acetylhexosaminidase: BN2005_RS11920 reductase: biosynthesis III cofactor biosynthesis protein ligase: heme b biosynthesis II tRNA ferredoxin glucosidase: III: xth D-aminoacylase: BN2005_RS11035 RsmG: rsmG BN2005_RS13755 a [protein]- BN2005_RS08030 synthase/ ligase: lyase: anhydro-N-acetyl- diaminopimeloyl- oxohexanoate DNA glycosylase: subunit nagZ an N 7 - BN2005_RS14065 a negatively (Staphylococcus) NAD salvage pathway III BN2005_RS11970 (oxygen-independent) guanosine(34) oxidoreductase: BN2005_RS12660 BN2005_RS16905 N ω -phospho- molybdopterin lipoate biosynthesis dihydrofolate BN2005_RS14715 [(R)- N-acetyl-D-BN2005_RS12215 β-D-muramate D-alanine BN2005_RS08620 alpha: ebgA methylguanine 527 [+ 2 isozymes] supercoiled DNA (to nicotinamide riboside) adenosylcobinamide-GDP molybdopterin transglycosylase acetate CoA- BN2005_RS16325 [+ 2 isozymes] a single L-arginine dUTP HMP-PP and incorporation II a 5,10- synthase: molybdate lipoyl]adenylate Carbohydrate Biosynthesis mannosamine beta-N- a 2'- N-acetyl-D- in 16S rRNA thiamine phosphate ribazoletransferase: cobS uroporphyrinogen-III Tgt: tgt transferase a [DNA]-3'- chitin stranded DNA methylenetetrahydrofolate BN2005_RS12265 an N 10 - lipoate-- Cell Structure Biosynthesis acetylhexosaminidase: a [DNA]- XXXG xyloglucan deoxyribonucleoside a carboxylate glucosamine synthase: NADP + uroporphyrinogen a 7-aminomethyl-7- subunit a 5'-phospho- 7,8-dihydro- a reduced hydroxyl a carboxylate octanoate bis(guanylyl molybdenum 4-oxo-2-pentenal + D-galactopyranose D-glucopyranose a D-amino acid bifunctional formyltetrahydrofolate protein ligase: decarboxylase: deazaguanosine 34 nagZ L-alanyl-γ-D- nucleotide- CO isobutanoyl-CoA H oligosaccharide D-glucopyranose 5'-monophosphate BN2005_RS01745 lipoate-- gluconeogenesis I alpha: atoD [DNA] 8-oxoguanine 2 ferredoxin [iron- cofactor) biosynthesis adenosylcobalamin 5'-phosphate BN2005_RS15290 PRPP biosynthesis 1,6-anhydro-N- 3'-phosphate 6-phosphate thiamine protein ligase: folylpolyglutamate a tetrahydrofolate bifunctional molybdopterin peptidoglycan biosynthesis I BN2005_RS13065 in tRNA N-acetyl-D- glutamyl-meso- 3-hydroxy-5- sulfur] cluster MoO - lipoate-- acetyl-β-muramate phosphate + 2 synthase/ folylpolyglutamate adenine (meso-diaminopimelate containing) uroporphyrinogen tRNA preQ1(34) S- mannosamine diaminopimelate NAD BN2005_RS15290 molybdopterin molybdate (S)-malate D-ribose 5- oxohexanoyl-CoA molybdopterin dihydrofolate synthase/ dinucleotide protein ligase: UDP-N-acetyl- decarboxylase: adenosylmethionine 6-phosphate lipoate-- cofactor phosphate UDP-N-acetyl- decaprenyl-diphospho-N- α 966 UDP-N-acetyl- synthase: dihydrofolate BN2005_RS11970 α ribose-phosphate ribosyltransferase- N-acetylmannosamine- 5-methoxy-6- (S)-methylmalonyl- -maltose 6'- a ribonucleoside a guanine a [protein]- CTP phosphoenol NAD(+) protein ligase: -D-glucosamine BN2005_RS02365 α-D-glucosamine NaMN pyruvate coenzyme A (S)-2- a [protein] Ser/Thr α-D-glucosamine BN2005_RS12265 synthase: molybdopterin a [lipoyl-carrier coproporphyrinogen III pyrophosphokinase: prs isomerase QueA: queA 6-phosphate acetylmuramoyl-pentapeptide methylbenzimidazole CoA phosphate glu triphosphate in 16S rRNA L-histidine anaerobic pyruvate diphosphatase: 6 UDP-N-acetylglucosamine N-acetyl-D- aminobutanoate UDP-N- a [lipoyl-carrierBN2005_RS11970 molybdenum cofactor adenosylcobalamin protein]-N -[(R HPr kinase/ anaerobic 16S rRNA histidine kinase: nudC a 5,10- BN2005_RS12265 molybdotransferase ribose-phosphate an epoxyqueuosine 34 2-epimerase: muramate 6- mannitol degradation I (S)-3- ribonucleoside thiamine protein] N 6 - guanylyltransferase: )-lipoyl]-L-lysine 1-carboxyvinyltransferase: undecaprenyldiphospho- phosphorylase: ribonucleoside (guanine(966)-N(2) acetylglucosamine pyruvate 10 MoeA: oxygen-independent diphosphokinase: prs BN2005_RS13885 hydroxybutanoyl-CoA methylmalonyl-CoA BN2005_RS13495 triphosphate octanoyl-L-lysine BN2005_RS00745 methylenetetrahydrofolate an N - murA in tRNA phosphate muramoylpentapeptide beta-N- nicotinate-nucleotide-- maltose-6'- CoA pyrophosphatase: BN2005_RS10740 )-methyltransferase 2-epimerase (non- kinase: pyk thiamine NMN BN2005_RS00770 coproporphyrinogen oxaloacetate PRPP N-acetyl-D- D-mannitol short-chain-enoyl- carboxyltransferase: glutamate-- triphosphate [+ 4 isozymes] reductase: lipoyl formyltetrahydrofolate UDP-N-acetylglucosamine tRNA N-acetylmuramic acetylglucosaminyltransferase: dimethylbenzimidazole phosphate BN2005_RS02015 RsmD: rsmD hydrolyzing): a [protein]- diphosphokinase: III oxidase: pyruvate glucosamine 1-phosphate CoA hydratase: cysteine ligase: anti-sigma F factor: reductase: an N 2 - BN2005_RS14065 5'/3'- synthase: bis(molybdenum 1-carboxyvinyltransferase: epoxyqueuosine(34) acid 6- mannitol-1- phosphoribosyltransferase: BN2005_RS02215 glucosidase: BN2005_RS16035 pyruvate MoO - BN2005_RS05115 6-phosphate murG BN2005_RS00705 BN2005_RS05510 BN2005_RS14065 966 α N-phospho- BN2005_RS07765 NAD salvage pathway II (PNC IV cycle) 2 phosphoenolpyruvate reductase QueG: queG phosphate phosphate 5- BN2005_RS02070 cobT BN2005_RS16295 a 2'- methylguanine UDP-N-acetyl- - dCTP nucleotidase lipA cofactor) molybdopterin tetrahydrofolate salvage from murA N-acetylglucosamine- a [protein] (L-serine/L- L-histidine coproporphyrinogen 34 etherase: murQ deoxyribonucleoside in 16S rRNA D-mannosamine thiamine SurE: surE a [lipoyl-carrier molybdenum cofactor glutathione lipoate biosynthesis flavin salvage 5,10-methenyltetrahydrofolate UDP-N-acetyl-α- carboxykinase (ATP) phosphoenolpyruvate a queuosine dehydrogenase: crotonyl-CoA threonine) phosphate 6 cofactor dehydrogenase 6-phosphate decaprenyl-pyrophosphoryl- oxaloacetate propanoyl-CoA 3',5'-ADP 4'-phosphopantetheine γ 5'-triphosphate diphosphate β protein]-N -[(R) + biosynthesis : BN2005_RS16475 BN2005_RS14070 UDP 5-methoxy-6- -L-glutamyl-(S)- 1-( -D guanylyltransferase: NAD and incorporation I cytidylyl molybdenum D-glucosamine- synthase: ppsA in tRNA deacetylase: nagA N-acetylmuramic D-glucopyranose thioredoxin -dihydrolipoyl]- a 5,10- HemZ: hemZ (N-acetylglucosamine)-N- methylbenzimidazole nicotinate D-glucopyranose 2-aminobutanoate ribofuranosyl) BN2005_RS00745 NAD(+) riboflavin cofactor sulfurylation enolpyruvate D-glucosamine acid 6- mannitol-1- butanoyl-CoA 6-phosphate pathway L-lysine methenyltetrahydrofolate phosphoenol acetylmuramyl-(pentapeptide) ribotide phosphate nicotinamide bis(guanylyl diphosphatase: nudC cys glu an octanoyl-[acp] bifunctional bifunctional 5,10- UDP-N- protoporphyrinogen IX 6-phosphate phosphate phosphate 5- dehydrogenase cytidylyl molybdenum pyruvate + an oxidized molybdopterin) riboflavin kinase/ methylenetetrahydrofolate acetylmuramate etherase: murQ dehydrogenase: (NAD , ferredoxin): cofactor cofactor (trioxo) N-acetyl-D- BN2005_RS15395 thiamine diphosphate thioredoxin FAD synthetase: dehydrogenase/5,10- dehydrogenase: phosphopyruvate UDP-N-acetyl-D- 5-oxo-L-proline metabolism BN2005_RS03985 a [glycine-cleavage a mature peptidoglycan a 2'- a (1->4)- a [release factor]- a supercoiled NAD(+) synthase: nadE glutamate-- a [lipoyl-carrier choline glucosamine (n) phylloquinone NAD(P)H H + glycine betaine a O- an L-aspartyl- a uridine in tRNA biosynthesis 6 BN2005_RS07300 methenyltetrahydrofolate murB hydratase: eno F6P a sulfurated [sulfur carrier] SAM complex H protein] (meso-DAP containing) deoxyribonucleoside met α-D-glucan protein] N - glucosamine biosynthesis I butanoyl-CoA [DNA] L-glutamine [tRNA Asn ] duplex DNA NAD(+) synthase: nadE cysteine ligase: a [protein] with a [protein] with α-D-glucosamine degradation III 6-phosphate N 6 -octanoyl-L-lysine 5'-triphosphate sialoglycoprotein DNA II (Bacillus) thiamine diphosphate octanoyl-L-lysine FMN an [MCD cofactor chaperone]-MCD cyclohydrolase: ala UDP-N-acetyl- 2-phospho- peptide chain Asp-tRNA(Asn) tRNA nicotinate adenine dinucleotide NMN BN2005_RS00705 BN2005_RS05500 α protoporphyrin IX D-glucopyranose an N-terminal an N-terminal 6-phosphate N-acetylglucosamine- release factor O-sialoglycoprotein dihydrouridine helicase thioredoxin- biosynthesis I (E. coli) lipoyl 10 -D-muramate D-glycerate acetate CoA- lytic transglycosylase /Glu-tRNA(Gln) HMP-PP bifunctional cysteine desulfurase: an N - 6-phosphate L-glutamine L-glutamate choline 6-phosphate NAD(P)H:quinone alpha-glucosidase: endopeptidase: PcrA: pcrA thiamine phosphate disulfide synthase: glucose-6-phosphate glucosamine- transferase domain-containing DNA polymerase IV: betaine reductase: methionine N(5)-glutamine amidotransferase: synthase γ-L-glutamyl- riboflavin kinase/ BN2005_RS04230 formyltetrahydrofolate 2,3-bisphosphoglycerate- choline deacetylase: nagA lipoyl oxidoreductase: BN2005_RS16440 BN2005_RS06835 synthase: reductase: HMP-PP lipA UDP-N- glu isomerase: 6-phosphate subunit protein: BN2005_RS04355 BN2005_RS04465 BN2005_RS02305 gamma- methyltransferase: gatB gatA gatC DusB: dusB [+ 3 isozymes] thiamine phosphate L-cysteine FAD synthetase: phosphoribosylglycinamide independent trimethylamine- D-glucosamine synthase: lipA wrbA an L-asparaginyl- a 5,6-dihydrouridine a single BN2005_RS01745 trxB a [lipoyl-carrier cysteine desulfurase acetylmuramate-- BN2005_RS02065 deaminase: alpha: atoD [+ 8 isozymes] lyase: megL prmC a peptide nicotinate-nucleotide BN2005_RS07300 formyltransferase: phosphoglycerate lyase: cutC endolytic transglycosylase 5 Asn in tRNA stranded DNA thiamine synthase: protein]-N 6 -[(R) NifS: nifS L-alanine ligase: F6P nagB 6-phosphate a [release factor]-N [tRNA ] adenylyltransferase: glutamate racemase: protoheme mutase: a [protein] with trimethylamine MltG: mltG a (1->4)- phosphate BN2005_RS01745 -dihydrolipoyl]- a [cytidylyl molybdenum cofactor BN2005_RS14735 BN2005_RS02085 phosphoglucosamine acetyl-CoA a [glycine-cleavage α D-glucopyranose -methyl-L-glutamine BN2005_RS04625 FAD BN2005_RS08985 an N-terminal 5- NAD(P) + phylloquinol acetyl phosphate trimethylamine -D-glucan thiamine S-adenosyl- BN2005_RS03785 glutamine-- F6P 6 an unsulfurated a reduced L-lysine chaperone]-cytidylyl molybdenum a tetrahydrofolate mutase: 5'-deoxyadenosine met complex H protein] N [DNA] 2-oxobutanoate methanethiol phosphate L-methionine NaMN UDP-N-acetyl- 3-phospho- fructose-6- oxo-L-proline γ bifunctional enoyl- [sulfur carrier] a mature peptidoglycan GlcNAc-1,6-anhMurNAc- bis(guanylyl tungstenpterin) thioredoxin glutathione cofactor (sulfo-dioxo) -L-glutamyl BN2005_RS11275 -[(R)-lipoyl]-L-lysine (n) biosynthesis α-D-muramoyl- D-glt D-glycerate phosphate glutathione CoA hydratase/ (meso-DAP containing) L-Ala-γ-D-Glu-DAP-D-Ala cofactor biosynthesis pyroglutamyl- 5-phosphate α-D-glucosamine L-alanine transaminase phosphate thiamine phosphoglycerate peptidase 1-phosphate met guanylyl molybdenum (isomerizing) acetyltransferase: diphosphate kinase: pgk MoO - a 2'- an N-terminal L- 1402 37 34 methionine cofactor biosynthesis I: pcp Alcohol Degradation a [pyruvate dehydrogenase E2 2 + UDP a cytidine guanine an adenine GTP thiamine Secondary Metabolite Biosynthesis UDP-N- : glmS bifunctional UDP-N- BN2005_RS12040 NAD(P)H a plastoquinone H a ribonucleoside a single an L-glutamyl- bis(tungstenpterin) a sulfurated [sulfur carrier] SAM 6 cys molybdopterin deoxyribonucleoside alanyl-[S18 protein Phe Gln thr diphosphate adenosyltransferase: MoO - thiamine diphosphate acetylmuramoyl- acetylglucosamine protein] N -octanoyl-L-lysine [DNA] triphosphate stranded DNA adenosylcobalamin- in 16S rRNA in tRNA [tRNA ] in tRNA cofactor 2 NADP biosynthesis D-glucosamine cofactor 5'-triphosphate of 30S ribosome] 16S rRNA tRNA tRNA BN2005_RS15845 molybdopterin salvage III 13-DPG (S)-propane-1,2-diol degradation diphosphorylase/ acetyl phosphate ribosomal protein Asp-tRNA(Asn) methylerythritol phosphate pathway I L-alanine--D- 6-phosphate 5-oxo-L-proline glycerol and glycerophosphodiester degradation glycerol degradation V dependent ribonucleoside- (cytidine(1402)-2'-O) (guanosine(37)-N1) L-threonine 3- adenosine(34) methionine cofactor molybdenum cofactor glutamate ligase: glucosamine-1- NAD(P)H:quinone diphosphate reductase: S18-alanine N- /Glu-tRNA(Gln) molybdenum cofactor + triose-phosphate dehydrogenase: adenosyltransferase: thiamine NAD type I phosphoglucosamine (S)-propane- phosphate N- acetate kinase: molybdenum DNA polymerase IV: DNA primase: acetyltransferase: -methyltransferase: -methyltransferase amidotransferase: deaminase guanylyltransferase: guanylyltransferase: D-glyceraldehyde BN2005_RS05790 isomerase: oxidoreductase: BN2005_RS13955 BN2005_RS05980 thiamine NAD(+)/ pyruvate glyceraldehyde- mutase: glycerol glycerol lipoyl synthase: lipA cofactor sulfurase: BN2005_RS04465 rimI rsmI 1 TrmD: trmD gatB gatA gatC TadA: tadA BN2005_RS01610 guanylyl BN2005_RS00745 3-phosphate 1,2-diol acetyltransferase BN2005_RS07710 wrbA BN2005_RS05265 vitamin B12-dependent an N-terminal N-acetyl- a 2'-O- an N - a hypoxanthine BN2005_RS00745 NADH kinase: BN2005_RS12580 3-phosphate BN2005_RS11275 1402 37 an L-glutaminyl- aminoacetone SAM molybdenum diphosphokinase: UDP-N-acetyl- glycerol GlmU: glmU BN2005_RS00805 [+ 8 isozymes] L-alanyl-[S18 protein methylcytidine methylguanine 34 propanediol/glycerol ribonucleotide reductase: Gln in tRNAs BN2005_RS08440 meso- α Phe [tRNA ] cofactor BN2005_RS07765 α-D-muramoyl-L- triose-phosphate dehydrogenase: -D-glucosamine dehydrogenase: N-acetyl-α-D- acetate of 30S ribosome] in 16S rRNA in tRNA thiamine + diaminopimelate glu family dehydratase BN2005_RS12030 bis(guanylyl NADP isomerase: gap 1-phosphate BN2005_RS05910 + ssDNA/pppN(pN) diphosphate alanyl-D-glutamate medium: glucosamine 5'-deoxyadenosine a [pyruvate dehydrogenase Mo(O)(S)- a plastoquinol NAD(P) tungstenpterin) cofactor BN2005_RS08990 dihydroxyacetone met 6 an unsulfurated [sulfur carrier] [DNA] hybrid dUDP D-glyceraldehyde bifunctional UDP-N- a glycerophosphodiester 1-phosphate E2 protein] N -lipoyl-L-lysine molybdopterin n -1 1-deoxy-D-xylulose DHAP BN2005_RS15125 glycerol ala UDP-N- 3-phosphate acetylglucosamine BN2005_RS15130 bifunctional UDP-N- cofactor 5-phosphate acetylmuramoyl- diphosphorylase/ BN2005_RS15135 glycerophosphodiester glycerol acetylglucosamine L-alanyl-D- glucosamine-1- 6 37 diphosphorylase/ Metabolic Regulator D-ala N -L-threonylcarbamoyladenosine phosphodiesterase: kinase α undecaprenyl-diphospho-N D-glyceraldehyde D-sedoheptulose a 2,3,4-saturated 1402 37 37 34 Amine and Polyamine glutamate--2, 6- phosphate N- 1-propanal DHAP UDP-N-acetyl- -D-glucosamine an inactive [choline a medium-chain H O dCDP a diphthine-[translation a cytidine a guanine adenine precorrin-3B an adenosine -modified tRNA biosynthesis glucosamine-1- γ SAM 1,2-diacyl-sn- 2 val Arg2 Biosynthesis Biosynthesis diaminopimelate acetyltransferase BN2005_RS08370 GlpK: glpK -acetylmuramoyl-L-alanyl- - trimethylamine-lyase] 3-phosphate 7-phosphate fatty acyl-CoA in 16S rRNA in tRNA in tRNA in [tRNA ] D-alanine--D- phosphate N- glycerol 3-phosphate CTP adenosylcobalamin- elongation factor 2] 16S rRNA tRNA 1tRNA1(Val) tRNA MEP ligase: GlmU: glmU D-glutamyl-L-lysyl- D-alanine precorrin-3B C(17)- ppGpp metabolism spermidine biosynthesis I alanine ligase: class II fructose- acetyltransferase dependent ribonucleoside- diphthine-- (cytosine(1402)-N(4) (guanosine(37)-N1) (adenine(37)-N6)- adenosine(34) BN2005_RS05780 bisphosphate N-acetyl-α-D- ATP sn-glycerol Carboxylate Degradation undecaprenyldiphospho- transketolase: diphosphate reductase: ammonia ligase: methyltransferase: BN2005_RS08945 thr GlmU: glmU choline TMA- phosphatidate acyl-CoA hydrolase: )-methyltransferase -methyltransferase methyltransferase: deaminase 2-C-methyl-D- aldolase: glucosamine 3-phosphate muramoylpentapeptide beta-N- BN2005_RS13145 BN2005_RS13955 BN2005_RS01775 cobJ D-alanine--D- glycerol degradation II UDP-N-acetyl- BN2005_RS11035 4 RsmH: rsmH 1 TrmD: trmD 6 BN2005_RS03490 TadA: tadA pppGpp erythritol 4-phosphate acetylglucosaminyltransferase: lyase-activating cytidylyltransferase: a diphthamide- an N - an N - an N - 34 SAM UDP-N-acetyl- BN2005_RS12590 1-phosphate propanoyl-CoA propan-1-ol α L-lysine fermentation [+ 4 isozymes] vitamin B12-dependent precorrin-4 an inosine alanine ligase: -D-glucosamine 1402 37 37 cytidylyltransferase: α murG enzyme: cutD BN2005_RS07360 [translation methylcytidine methylguanine methyladenine Arg2 -D-muramoyl- [+ 4 isozymes] bifunctional UDP-N- threonylcarbamoyl- to acetate and butanoate ribonucleotide reductase: in [tRNA ] ispD L-alanyl-γ-D- BN2005_RS01100 phosphate glycerol UDP-N-acetylglucosamine elongation factor 2] in 16S rRNA in tRNA in tRNA val adenosylmethionine acetylglucosamine AMP synthase: D-ribose 5- D-xylulose BN2005_RS12030 1 bifunctional (p)ppGpp 4-(cytidine 5'- glutamyl-meso-2,6- propanoyltransferase: glycerol 1-carboxyvinyltransferase: ditrans,octacis-undecaprenyldiphospho- UDP a medium chain fatty acid synthetase/guanosine- decarboxylase: speD D-alanyl-D-alanine diphosphorylase/ BN2005_RS16060 DHAP murA lys N-acetyl-(N-acetylglucosaminyl)muramoyl- an activated [choline 5'-deoxyadenosine phosphate 5-phosphate a CDP-2,3,4-saturated- CDP diphospho)-2-C- diaminopimelate pduL dehydrogenase: met diacylglycerol 3',5'-bis(diphosphate) 3'- methyl-D-erythritol glucosamine-1- BN2005_RS05910 UDP-N-acetylglucosamine L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine trimethylamine-lyase] putrescine dAdoMet phosphate N- (L-threonylcarbamoyl) [+ 2 isozymes] lysine 2,3- pyrophosphohydrolase: 4-(cytidine 5'- UDP-N- dihydroxyacetone 1-carboxyvinyltransferase: β-D-fructose 1,6- acetyltransferase adenylate propanoyl aminomutase: BN2005_RS08080 diphospho)- acetylmuramoyl- murA bisphosphate GlmU: glmU tRNA (adenosine(37)-N6)- phosphate ablA α-D- an N-acetyl-β- a [2-oxoglutarate α 1498 2-C-methyl-D- tripeptide--D-alanyl- α a [formate C a pentaglycine cross- a 5S rRNA a [protein]- - a uracil class II fructose- threonylcarbamoyltransferase UDP-N-acetyl- - a reduced flavodoxin SAM a protein with Se-methyl-Se-L-methionine glucopyranose D-hexosaminide dehydrogenase E2 protein] a holo [PedD acyl- methylglyoxal N5-CAIR erythritol kinase: D- alanine ligase: α UDP-N-acetyl- acetate kinase: β acetyltransferase]-glycine bridge of peptidoglycan precursor L-glutamate in 16S rRNA bisphosphatase: UDP- -D- α complex: tsaD tsaB tsaE D-glucosamine- L- -lysine LPXTG motif 1-phosphate dTTP N 6 -dihydrolipoyl-L-lysine carrier protein] protein-glutamate O- 16S rRNA 5-(carboxyamino) GTP ppGpp BN2005_RS03675 BN2005_RS08950 -D-glucosamine BN2005_RS07710 galactose an N 6 -L- DHAP enolpyruvate dihydrolipoyl ACP S- glyoxalase: spermidine 2-phospho-4-(cytidine glpX [+ 2 isozymes] D-lysine 5,6- beta-N- methyltransferase (uracil(1498)-N(3))- imidazole UDP-N- biosynthesis 37 UDP-N- pyruvate formate dehydrogenase: malonyltransferase: BN2005_RS06635 5'-diphospho)-2-C- class II fructose- threonylcarbamoyladenine aminomutase class A sortase: ribonuclease glucose-1-phosphate acetylhexosaminidase: CheR: methyltransferase: ribonucleotide acetylmuramoyl- UDP-α-D-glucose in tRNA acetylmuramate lyase-activating M5: rnmV methionine gamma- lpdA fabD BN2005_RS07060 BN2005_RS05145 mutase: purE bifunctional (p)ppGpp methyl-D-erythritol bisphosphatase: propanoate subunit alpha: BN2005_RS10995 thymidylyltransferase: nagZ a [2-oxoglutarate a malonyl- a [protein]-L- an N 3 - tripeptide--D- UDP-glucose dehydrogenase: protein: pflA lyase: megL (R)-lactate synthetase/guanosine- 2-C-methyl-D- glpX BN2005_RS03815 BN2005_RS05985 dehydrogenase E2 [PedD acyl- glutamate-O 5 methyluracil 1498 CAIR alanyl-D- alanine 4-epimerase murB 6 3',5'-bis(diphosphate) 3'- Polyprenyl Biosynthesis erythritol 2,4- (3S,5S)-3,5- a protein with LPXT an N-acetyl-β- protein] N -lipoyl-L-lysine carrier protein] -methyl-ester in 16S rRNA ligase: murF F6P GalE: galE UDP-N-acetyl- a [formate C acetyltransferase]- a peptide with an a double-stranded pyrophosphohydrolase: cyclodiphosphate α diaminohexanoate 5'-deoxyadenosine carboxyl end attached a mature 5S-rRNA α an alcohol D-hexosamine UDP- -D-galactose pyruvate fermentation Fermentation α-D-muramate a flavodoxin semiquinone glycin -2-yl radical met N-terminal glycine oligonucleotide 2-oxobutanoate dimethyl selenide dTDP- -D-glucose BN2005_RS08080 di-trans,poly-cis synthase: glucose-6-phosphate to a pentaglycine cross- BN2005_RS11880 UDP-N-acetyl- to butanoate -undecaprenyl α-D-muramoyl- isomerase: bridge of peptidoglycan phosphate biosynthesis 2-C-methyl-D-erythritol- L-alanyl-γ-D- BN2005_RS02065 pyruvate GDP UDP-N-acetyl- (S)-5-amino-3- (2E,6E)-farnesyl 2,4-cyclodiphosphate D-glucopyranose 10 IPP glutamyl-meso-2,6- di-trans,octa-cis oxohexanoate UDP-N-acetyl-α-D-glucosamine undecaprenyl-diphospho-N-acetylmuramoyl-L- an L-methionyl- an N - RNase R degradation α-D-muramoyl- γ a β-D-galactoside p-nitrophenyl-β-D-galactoside propanoyl-CoA H O [DNA] a holo [PedN acyl- DHAP CAIR diphosphate diaminopimeloyl- -undecaprenyl 6-phosphate alanyl- -D-glutamyl-L-lysyl- D-alanyl-D-alanine Met 2 L-homoserine a protein flavodoxin- L-alanyl-γ-D- [initiator tRNA ] formyltetrahydrofolate substrate RNA carrier protein] dependent D-alanyl-D-alanine phosphate DNA polymerase IV: methylglyoxal 5-(carboxyamino) acetyl-CoA glutamyl-meso-2,6- 3-keto-5- undecaprenyldiphospho- ACP S- homoserine O- isoprenyl (E)-4-hydroxy- BN2005_RS04465 GPR endopeptidase: synthase: imidazole diaminopimelate aminohexanoate muramoylpentapeptide beta-N- beta-galactosidase beta-galactosidase malonyltransferase: succinyltransferase: transferase: 3-methylbut- phospho-N- acetyl-CoA C- acetylglucosaminyltransferase: methionyl-tRNA ribonuclease acyl-CoA hydrolase: [+ 2 isozymes] BN2005_RS05090 BN2005_RS14170 ribonucleotide Carbohydrate Degradation cleavage protein: subunit alpha: ebgA subunit alpha: ebgA fabD metA BN2005_RS07365 2-enyl- acetylmuramoyl- acetyltransferase: murG formyltransferase: R: rnr BN2005_RS11035 a 2'- a malonyl[PedN mutase: purE BN2005_RS16180 O-succinyl-L- methylglyoxal diphosphate pentapeptide- BN2005_RS16025 BN2005_RS07810 deoxyribonucleoside acyl-carrier a peptide AIR di-trans,octa-cis homoserine synthase: ispG transferase: D-galactose degradation I (Leloir pathway) (S)-3- a non galactosylated 5'-monophosphate protein] -undecaprenyl acetoacetyl-CoA glycogen degradation II chitobiose degradation D-mannose degradation ditrans,octacis-undecaprenyldiphospho-N- D-galactopyranose a nucleoside 5'- D-galactopyranose 4-nitrophenol (E)-4-hydroxy-3- BN2005_RS05785 aminobutanoyl- acetoacetate UDP an N-formyl- galactose acceptor a diribonucleotide propanoate diphosphate β-D- acetyl-(N-acetyl-β-D-glucosaminyl)muramoyl-L- monophosphate methylbut-2-en- CoA L-methionyl- a tetrahydrofolate undecaprenyl- galactopyranose a glycogen N,N'-diacetylchitobiose D-mannopyranose alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine 1-yl diphosphate undecaprenyldiphospho- 3-aminobutyryl-CoA met diphosphatase 6'-phosphate 6-phosphate [initiator tRNA ] N-acetylmuramoyl-L- chitin mannose-6- ammonia-lyase: UppP: uppP bifunctional 4- alanyl-γ-D-glutamyl-meso (S)-3- glycogen/starch/ disaccharide di-trans,octa-cis phosphate BN2005_RS16185 hydroxy-3-methylbut- hydroxybutanoyl- alpha-glucan a purine base an [HPr]- phosphoenol 1518 -2,6-diaminopimeloyl- α-D- deacetylase: chbG isomerase: D-glucopyranose maltopentaose nicotinate PRPP adenine / (+)-7-epi- H O acetoacetyl-CoA a holo [BryP acyl- L-histidinol a dipeptide (R)-methylmalonyl- precorrin-8x -undecaprenyl 2-enyl diphosphate CoA phosphorylase: 1519 2 D-alanyl-D-alanine galactopyranose chitin crotonyl-CoA lesion in DNA L-histidine pyruvate adenine in 16S rRNA jasmonoyl-CoA phosphate CoA phosphate reductase/ short-chain-enoyl- glgP BN2005_RS16285 16S rRNA carrier protein] undecaprenyldiphospho- disaccharide F6P 3-hydroxybutyryl- histidinol-phosphate membrane methylmalonyl- precorrin-8X 30S ribosomal CoA hydratase: butanoyl-CoA pyruvate fermentation (adenine(1518)-N(6)/ ACP S- bifunctional 4- muramoylpentapeptide beta-N- galactokinase: an α-limit dextrin deacetylase: chbG formamidopyrimidine- phosphoenolpyruvate- 4-alpha- nicotinate CoA dehydrogenase: transaminase: dipeptidase: CoA methylmutase: protein S1: BN2005_RS02070 N-monoacetylchitobiose dehydrogenase to acetate IV adenine(1519)-N(6))- acyl-CoA hydrolase: malonyltransferase: hydroxy-3-methylbut- acetylglucosaminyltransferase: BN2005_RS01920 DNA glycosylase: -protein glucanotransferase: phosphoribosyltransferase: BN2005_RS02075 BN2005_RS11940 BN2005_RS14130 epimerase: mce cbiC BN2005_RS07055 4-alpha- 6'-phosphate (NAD + , ferredoxin): dimethyltransferase BN2005_RS11035 (S)-3- fabD 3-(imidazol-4- 2-enyl diphosphate murG crotonyl-CoA α-D-galactose pyruvate BN2005_RS08620 phosphotransferase: ptsP malQ BN2005_RS02700 a malonyl- a proteinogenic (S)-methylmalonyl- lipid II (meso UDP-α-D-glucose glucanotransferase: 6-phospho-beta- BN2005_RS15395 RsmA: rsmA hydroxybutanoyl- yl)-2-oxopropyl hydrogenobyrinate reductase/ 1-phosphate N 6 -dimethyladenine 1518 [BryP acyl- amino acid CoA 30S ribosomal diaminopimelate malQ glucosidase: 6 1519 CoA phosphate IPP butanoyl-CoA butanoyl-CoA a [DNA]- an [HPr protein]- /N -dimethyladenine (+)-7-epi- carrier protein] protein S1: containing) a debranched BN2005_RS12660 formate C- a 5'-phospho- a modified maltose maltotetraose dehydrogenase nucleotide- 4-oxo-2-pentenal N π -phospho- pyruvate NaMN in 16S rRNA jasmonate BN2005_RS07055 + α-limit dextrin acetyltransferase: [DNA] nucleobase (NAD , ferredoxin): [+ 2 isozymes] 3'-phosphate L-histidine type 2 isopentenyl- BN2005_RS15395 N-acetyl-D-glucosamine acetate CoA- pflB diphosphate UDP- glycogen/starch/ 6-phosphate transferase formate C- butanoyl-CoA Delta-isomerase: glucose 4- alpha-glucan subunit acetyltransferase: a single D-xylulose D-erythrose D-firefly a cytosine 967 D-xylose D-glucopyranose maltohexaose maltohexaose H O a holo [BryU acyl- a cytosine in DNA precorrin-6B precorrin-2 NADH BN2005_RS01305 epimerase phosphorylase: alpha: atoD BN2005_RS03725 asp stranded DNA 5-phosphate 4-phosphate luciferyl-CoA 2 in 16S rRNA phosphate D-glucopyranose degradation I CAIR carrier protein] GalE: galE glgP 16S rRNA DNA cytosine precorrin-6Y C5,15- precorrin-2 C(20)- NAD(+)/ butyryltransferase: ptb ACP S- 4-alpha- (cytosine(967)-C(5) methyltransferase: methyltransferase methyltransferase: NADH kinase: DMAPP α D-xylose acetoacetyl-CoA butanoate exodeoxyribonuclease transketolase: alpha-glucosidase: malonyltransferase: butanoyl -D- acetyl-CoA formate glucanotransferase: acyl-CoA hydrolase: )-methyltransferase dcm (decarboxylating) cobI BN2005_RS08440 phosphoribosylaminoimidazolesuccinocarboxamide VII: BN2005_RS06840 BN2005_RS13145 BN2005_RS16440 fabD phosphate glucopyranose acetyl-CoA C- malQ BN2005_RS11035 RsmB: rsmB [+ 3 isozymes] : cbiT cbiE bifunctional enoyl- xseB 967 a malonyl- α-D- 1-phosphate synthase: BN2005_RS00660 [+ 4 isozymes] a 5-methylcytosine a 5-methylcytosine precorrin-3A NADPH pyruvate fermentation UDP-α-D- fructose degradation D-xylulose acetyltransferase: CoA hydratase/ [BryU acyl- precorrin-8x butyrate glucopyranose in 16S rRNA in DNA to ethanol I galactose BN2005_RS16025 phosphate carrier protein] kinase: buk 1-phosphate phospho- β-D-fructofuranose a single-stranded maltopentaose maltose D-glyceraldehyde D-glucopyranose maltopentaose sugar mutase: xylulokinase: acetyltransferase: a ribonucleoside F6P D-firefly luciferin butyrate 1-phosphate xylB acetyl-CoA SAICAR 5'-monophosphate oligodeoxyribonucleotide 3-phosphate kinase: buk pyruvate phospho- BN2005_RS08825 1-phosphofructokinase: BN2005_RS12040 sugar mutase: pfkB D-xylulose bifunctional enoyl- butanoate D-glucopyranose 5-phosphate acetyl phosphate BN2005_RS08825 1-phosphofructokinase: CoA hydratase/ 10 a [pyruvate dehydrogenase formate C- an N - a 2-deoxy-D- a 3,5,7,9,11,13,15- α 6-phosphate pfkB phosphate AICAR a nucleobase D-glucopyranose a maltodextrin maltotriose a glucan maltoheptaose 6 meso- (E)-caffeoyl-CoA -D-lyxopyranose pyruvate 7,8-dihydropterin acetyltransferase: D-glucopyranose β-D-fructose 1,6- formyltetrahydrofolate ribosyl-base hepta-oxo- E2 protein] N - acetyltransferase: acetate kinase: diaminopimelate D-lyxose/D- pflB 6-phosphate bisphosphate hexadecanoyl-[PKS-acp] dihydrolipoyl-L-lysine electron transfer pyruvate guanine BN2005_RS12040 BN2005_RS07710 dihydrolipoyl diaminopimelate flavoprotein mannose family formate C- bifunctional nucleoside 2- 4-alpha- 4-alpha- aldo/keto reductase: carboxylase: deaminase: alpha-glucosidase: dehydrogenase: dehydrogenase: subunit alpha: sugar isomerase: acetyltransferase: acetate phosphoribosylaminoimidazolecarboxamide deoxyribosyltransferase: glucanotransferase: glucanotransferase: BN2005_RS11555 BN2005_RS12940 guaD acetyl phosphate BN2005_RS16440 lpdA BN2005_RS09600 BN2005_RS15395 BN2005_RS16115 BN2005_RS03725 formyltransferase/IMP cyclohydrolase: purH BN2005_RS06620 malQ malQ 9-hydroxy-3,5,7,11,13,15- 7,8- a [pyruvate dehydrogenase (S)-2,3,4,5- D-xylulose oxaloacetate 6 hydrocaffeoyl-CoA dihydrolumazine acetate kinase: hexaoxohexadecanoyl- E2 protein] N -lipoyl-L-lysine tetrahydrodipicolinate [PKS-acp] acetyl-CoA formate BN2005_RS07710 a 2-deoxy-D- a maltodextrin maltose a glucan D-glucopyranose D-glucopyranose maltohexaose FAICAR a tetrahydrofolate a nucleobase ribosyl-base acetaldehyde acetate dehydrogenase (acetylating): a [histone]-N 6 - a plant soluble N,N',N''- (1R,6R)-6-hydroxy-2- 4-hydroxy-3- (R)-10- (2S)- cytidine NAD + D-glucopyranose maltotriose hydantoin citrate BN2005_RS03230 acetyl-L-lysine IMP heteroglycan triacetylchitotriose succinylcyclohexa-2,4- octaprenylbenzoate Hydroxystearate ethylmalonyl-CoA diene-1-carboxylate UbiD family methylmalonyl- uridine kinase: acetaldehyde dihydropyrimidinase: aconitate hydratase: oleate hydratase: bifunctional 4-alpha- beta-N- o-succinylbenzoate decarboxylase: CoA BN2005_RS06090 NAD-dependent alpha-glucosidase: hydA BN2005_RS12950 BN2005_RS14875 phosphoribosylaminoimidazolecarboxamide glucanotransferase: acetylhexosaminidase: synthase: menC BN2005_RS17135 epimerase: mce deacylase: BN2005_RS16440 CMP formyltransferase/IMP cyclohydrolase: purH malQ nagZ (2R)- BN2005_RS12195 N-carbamoylglycine D-threo-isocitrate 2-octaprenylphenol oleate FAICAR 2-succinylbenzoate ethylmalonyl-CoA ethanol a plant soluble N,N'- N-acetyl-D- 2''-O-acetyl- maltose D-glucopyranose maltose NADPH repair (eukaryotes) ADP-ribose a [histone]-L-lysine nicotinamide heteroglycan diacetylchitobiose glucosamine

NADPH a [protein]-N 6 - a 5-carboxymethylaminomethyluridine 34 a long-linear 3-phospho- a uridine 55 adenosyl-cob(III) a double uridine NAD + D-glucopyranose maltotetraose α-D-glucopyranose maltopentaose 2,3- precorrin-4 Leu α-D-glucan acetyl-L-lysine in tRNA diaminopropanoate D-glycerate in tRNA yrinate a,c-diamide stranded DNA tRNA (uridine(34)/cytosine(34)/5- phosphoglycerate tRNA cobyric acid DNA/RNA precorrin-4 C(11)- uridine kinase: BN2005_RS06090 NAD-dependent carboxymethylaminomethyluridine(34) 4-alpha- 4-alpha- alpha-glucosidase: diaminopropionate dehydrogenase: pseudouridine(55) synthase: nuclease methyltransferase: -2'-O)- methyltransferase TrmL: trmL glucanotransferase: glucanotransferase: ammonia-lyase: dpaL BN2005_RS14635 synthase TruB: truB BN2005_RS13345 SfsA: sfsA cobM (R)-NADPHX NAD(P)H-hydrate deacylase: BN2005_RS16440 UMP epimerase: BN2005_RS12195 a 5-carboxymethylaminomethyl- malQ malQ a pseudouridine 55 34 Leu pyruvate 3-phosphooxypyruvate adenosylcobyrate a 5'-phosphooligonucleotide precorrin-5 BN2005_RS12975 2'-O-methyluridine in tRNA in tRNA 2''-O-acetyl- a short 1,4- D-glucopyranose maltotetraose (S)-NADPHX maltose maltotriose α ADP-ribose nicotinamide a [protein]-L-lysine -D-glucan NADH repair (eukaryotes) NAD(P)H-hydrate dehydratase: 6 BN2005_RS10955 an N -L- 1915 N,N'- NADH 3-methyl-2- 5,10-methylene- 34 a pseudouridine a single D-gluconate L-ribulose 5- CTP a cytidine in tRNA 37 an α-limit dextrin maltose ethylene glycol oxobutanoate tetrahydromethanopterin threonylcarbamoyladenine diacetylchitobiose 6-phosphate phosphate NADPH in 23S rRNA stranded DNA tRNA (uridine(34)/cytosine(34)/5- in tRNA 23S rRNA beta-N- 4-alpha- NADP-dependent diol dehydratase ribulose phosphate dCTP deaminase: tRNA deoxyribonuclease alpha-glucosidase: 3-methyl-2-oxobutanoate carboxymethylaminomethyluridine(34) (pseudouridine(1915)- acetylhexosaminidase: glucanotransferase: phosphogluconate small subunit: epimerase: BN2005_RS11955 threonylcarbamoyladenosine IV: BN2005_RS09175 BN2005_RS16440 hydroxymethyltransferase: -2'-O)- methyltransferase TrmL: trmL N(3))-methyltransferase nagZ malQ dehydrogenase: gndA BN2005_RS15125 BN2005_RS12545 dehydratase: BN2005_RS08055 α UTP 34 6 RlmH: rlmH N-acetyl-D- a -limit dextrin panB a 2'-O-methylcytidine a cyclic N -L- an N 3 - D-ribulose D-xylulose (R)-NADHX a 5'-phosphooligonucleotide glucosamine with short branches D-glucopyranose acetaldehyde in tRNA threonylcarbamoyladenosine methylpseudouridine 1915 5-phosphate 5-phosphate NAD(P)H-hydrate 37 in tRNA in 23S rRNA epimerase: 2-dehydropantoate THMPT (S)-NADHX BN2005_RS12975 NAD(P)H-hydrate dehydratase: BN2005_RS10955

NADH

D-cellobiose lipid II (meso D-fructose queuosine queuosine 6'- diaminopimelate 1-phosphate phosphate containing)

FtsW RS03115 RS11580 RS03755 CelB

lipid II (meso queuosine queuosine D-fructose D-cellobiose diaminopimelate containing) This diagram was automatically generated by SRI International Pathway Tools version 25.0, authors S. Paley and P.D. Karp.