(Non-Toxic Red Tide) in Malacca River, Malaysia
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Cryptophyte Farming by Symbiotic Ciliate Host Detected in Situ
Cryptophyte farming by symbiotic ciliate host detected in situ Dajun Qiua, Liangmin Huanga, and Senjie Linb,1 aChinese Academy of Sciences Key Laboratory of Tropical Marine Bio-Resources and Ecology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou 510301, China; and bDepartment of Marine Sciences, University of Connecticut, Groton, CT 06340 Edited by David M. Karl, University of Hawaii, Honolulu, HI, and approved September 8, 2016 (received for review July 28, 2016) Protist–alga symbiosis is widespread in the ocean, but its character- as the causative species of the bloom, with no detectable crypto- istics and function in situ remain largely unexplored. Here we report phytes and hardly any other organisms present in the bloom water − the symbiosis of the ciliate Mesodinium rubrum with cryptophyte (Fig. 1B). At 1.03 × 106 cells L 1, M. rubrum abundance in the bloom cells during a red-tide bloom in Long Island Sound. In contrast to was over 100-fold higher than the annual peak in Long Island Sound the current notion that Mesodinium retains cryptophyte chloroplasts (15). Each Mesodinium cell harbored 20 to 30 cryptophyte cells (n = or organelles, our multiapproach analyses reveal that in this bloom 16), which packed the peripheral region of the M. rubrum cells (Fig. the endosymbiotic Teleaulax amphioxeia cells were intact and 1E), with complete cell structures, including cell membranes, nuclei, expressing genes of membrane transporters, nucleus-to-cytoplasm and chloroplasts (Fig. 1C). Taking advantage of the large cell size of RNA transporters, and all major metabolic pathways. Among the Mesodinium spp. (width, 20 to 23 μm; length, 25 to 26 μm), we most highly expressed were ammonium transporters in both organ- picked M. -
Protocols for Monitoring Harmful Algal Blooms for Sustainable Aquaculture and Coastal Fisheries in Chile (Supplement Data)
Protocols for monitoring Harmful Algal Blooms for sustainable aquaculture and coastal fisheries in Chile (Supplement data) Provided by Kyoko Yarimizu, et al. Table S1. Phytoplankton Naming Dictionary: This dictionary was constructed from the species observed in Chilean coast water in the past combined with the IOC list. Each name was verified with the list provided by IFOP and online dictionaries, AlgaeBase (https://www.algaebase.org/) and WoRMS (http://www.marinespecies.org/). The list is subjected to be updated. Phylum Class Order Family Genus Species Ochrophyta Bacillariophyceae Achnanthales Achnanthaceae Achnanthes Achnanthes longipes Bacillariophyta Coscinodiscophyceae Coscinodiscales Heliopeltaceae Actinoptychus Actinoptychus spp. Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Akashiwo Akashiwo sanguinea Dinoflagellata Dinophyceae Gymnodiniales Gymnodiniaceae Amphidinium Amphidinium spp. Ochrophyta Bacillariophyceae Naviculales Amphipleuraceae Amphiprora Amphiprora spp. Bacillariophyta Bacillariophyceae Thalassiophysales Catenulaceae Amphora Amphora spp. Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Anabaenopsis Anabaenopsis milleri Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema Anagnostidinema amphibium Anagnostidinema Cyanobacteria Cyanophyceae Oscillatoriales Coleofasciculaceae Anagnostidinema lemmermannii Cyanobacteria Cyanophyceae Oscillatoriales Microcoleaceae Annamia Annamia toxica Cyanobacteria Cyanophyceae Nostocales Aphanizomenonaceae Aphanizomenon Aphanizomenon flos-aquae -
Metagenomic Characterization of Unicellular Eukaryotes in the Urban Thessaloniki Bay
Metagenomic characterization of unicellular eukaryotes in the urban Thessaloniki Bay George Tsipas SCHOOL OF ECONOMICS, BUSINESS ADMINISTRATION & LEGAL STUDIES A thesis submitted for the degree of Master of Science (MSc) in Bioeconomy Law, Regulation and Management May, 2019 Thessaloniki – Greece George Tsipas ’’Metagenomic characterization of unicellular eukaryotes in the urban Thessaloniki Bay’’ Student Name: George Tsipas SID: 268186037282 Supervisor: Prof. Dr. Savvas Genitsaris I hereby declare that the work submitted is mine and that where I have made use of another’s work, I have attributed the source(s) according to the Regulations set in the Student’s Handbook. May, 2019 Thessaloniki - Greece Page 2 of 63 George Tsipas ’’Metagenomic characterization of unicellular eukaryotes in the urban Thessaloniki Bay’’ 1. Abstract The present research investigates through metagenomics sequencing the unicellular protistan communities in Thermaikos Gulf. This research analyzes the diversity, composition and abundance in this marine environment. Water samples were collected monthly from April 2017 to February 2018 in the port of Thessaloniki (Harbor site, 40o 37’ 55 N, 22o 56’ 09 E). The extraction of DNA was completed as well as the sequencing was performed, before the downstream read processing and the taxonomic classification that was assigned using PR2 database. A total of 1248 Operational Taxonomic Units (OTUs) were detected but only 700 unicellular eukaryotes were analyzed, excluding unclassified OTUs, Metazoa and Streptophyta. In this research-based study the most abundant and diverse taxonomic groups were Dinoflagellata and Protalveolata. Specifically, the most abundant groups of all samples are Dinoflagellata with 190 OTUs (27.70%), Protalveolata with 139 OTUs (20.26%) Ochrophyta with 73 OTUs (10.64%), Cercozoa with 67 OTUs (9.77%) and Ciliophora with 64 OTUs (9.33%). -
Mixotrophic Protists Among Marine Ciliates and Dinoflagellates: Distribution, Physiology and Ecology
FACULTY OF SCIENCE UNIVERSITY OF COPENHAGEN PhD thesis Woraporn Tarangkoon Mixotrophic Protists among Marine Ciliates and Dinoflagellates: Distribution, Physiology and Ecology Academic advisor: Associate Professor Per Juel Hansen Submitted: 29/04/10 Contents List of publications 3 Preface 4 Summary 6 Sammenfating (Danish summary) 8 สรุป (Thai summary) 10 The sections and objectives of the thesis 12 Introduction 14 1) Mixotrophy among marine planktonic protists 14 1.1) The role of light, food concentration and nutrients for 17 the growth of marine mixotrophic planktonic protists 1.2) Importance of marine mixotrophic protists in the 20 planktonic food web 2) Marine symbiont-bearing dinoflagellates 24 2.1) Occurrence of symbionts in the order Dinophysiales 24 2.2) The spatial distribution of symbiont-bearing dinoflagellates in 27 marine waters 2.3) The role of symbionts and phagotrophy in dinoflagellates with symbionts 28 3) Symbiosis and mixotrophy in the marine ciliate genus Mesodinium 30 3.1) Occurrence of symbiosis in Mesodinium spp. 30 3.2) The distribution of marine Mesodinium spp. 30 3.3) The role of symbionts and phagotrophy in marine Mesodinium rubrum 33 and Mesodinium pulex Conclusion and future perspectives 36 References 38 Paper I Paper II Paper III Appendix-Paper IV Appendix-I Lists of publications The thesis consists of the following papers, referred to in the synthesis by their roman numerals. Co-author statements are attached to the thesis (Appendix-I). Paper I Tarangkoon W, Hansen G Hansen PJ (2010) Spatial distribution of symbiont-bearing dinoflagellates in the Indian Ocean in relation to oceanographic regimes. Aquat Microb Ecol 58:197-213. -
Chapter 6.2-Assessment of Harmful Algae Bloom
Maryland’s Coastal Bays: Ecosystem Health Assessment Chapter 6.2 Chapter 6.2 Assessment of harmful algae bloom species in the Maryland Coastal Bays Catherine Wazniak Maryland Department of Natural Resources, Tidewater Ecosystem Assessment, Annapolis, MD 21401 Abstract Thirteen potentially harmful algae taxa have been identified in the Maryland Coastal Bays: Aureococcus anophagefferens (brown tide), Pfiesteria piscicida and P. shumwayae, Chloromorum/ Chattonella spp., Heterosigma akashiwo, Fibrocapsa japonica, Prorocentrum minimum, Dinophysis spp., Amphidinium spp., Pseudo-nitzchia spp., Karlodinium micrum and two macroalgae genera (Gracilaria, Chaetomorpha). Presence of potentially toxic species is richest in the polluted tributaries of St. Martin River and Newport Bay. Approximately 5% of the phytoplankton species identified for Maryland’s Coastal Bays represent potentially harmful algal bloom (HAB) species. The HABs are recognized for their potentially toxic properties and, in some cases, their ability to produce large blooms negatively affecting light and dissolved oxygen resources. Brown tide (Aureococcus anophagefferens) has been the most widespread and prolific HAB species in the area in recent years, producing growth impacts to juvenile clams in test studies and potential impacts to sea grass distribution and growth (see Chapter 7.1). Macroalgal fluctuations may be evidence of a system balancing on the edge of a eutrophic (nutrient- enriched) state (see chapter 4). No evidence of toxic activity has been detected among the Coastal Bays phytoplankton. However, species such as Pseudo-nitzschia seriata, Prorocentrum minimum, Pfiesteria piscicida, Dinophysis acuminata and Karlodinium micrum have produced positive toxic bioassays or generated detectable toxins in Chesapeake Bay. Pfiesteria piscicida was retrospectively considered as the likely causative organism in a large historical fish kill on the Indian River, Delaware. -
Pigment Composition in Four Dinophysis Species (Dinophyceae
Running head: Dinophysis pigment composition 1 Pigment composition in three Dinophysis species (Dinophyceae) 2 and the associated cultures of Mesodinium rubrum and Teleaulax amphioxeia 3 4 Pilar Rial 1, José Luis Garrido 2, David Jaén 3, Francisco Rodríguez 1* 5 1Instituto Español de Oceanografía. Subida a Radio Faro, 50. 36200 Vigo, Spain. 6 2Instituto de Investigaciones Marinas, Consejo Superior de Investigaciones Científicas 7 C/ Eduardo Cabello 6. 36208 Vigo, Spain. 8 3Laboratorio de Control de Calidad de los Recursos Pesqueros, Agapa, Consejería de Agricultura, Pesca y Medio 9 Ambiente, Junta de Andalucía, Ctra Punta Umbría-Cartaya Km. 12 21459 Huelva, Spain. 10 *CORRESPONDING AUTHOR: [email protected] 11 12 Despite the discussion around the nature of plastids in Dinophysis, a comparison of pigment 13 signatures in the three-culture system (Dinophysis, the ciliate Mesodinium rubrum and the 14 cryptophyte Teleaulax amphioxeia) has never been reported. We observed similar pigment 15 composition, but quantitative differences, in four Dinophysis species (D. acuminata, D. acuta, D. 16 caudata and D. tripos), Mesodinium and Teleaulax. Dinophysis contained 59-221 fold higher chl a 17 per cell than T. amphioxeia (depending on the light conditions and species). To explain this result, 18 several reasons (e.g. more chloroplasts than previously appreciated and synthesis of new pigments) 19 were are suggested. 20 KEYWORDS: Dinophysis, Mesodinium, Teleaulax, pigments, HPLC. 21 22 INTRODUCTION 23 Photosynthetic Dinophysis species contain plastids of cryptophycean origin (Schnepf and 24 Elbrächter, 1999), but there continues a major controversy around their nature, whether there exist 25 are only kleptoplastids or any permanent ones (García-Cuetos et al., 2010; Park et al., 2010; Kim et 26 al., 2012a). -
Biosketch CV.Umces
BIOGRAPHICAL SKETCH - DIANE K. STOECKER University of Maryland Center for Environmental Science, Horn Point Laboratory P.O. Box 775 Cambridge, MD 21613-0775 Tel: 410 221-8407 [email protected] Professional Preparation: University of New Hampshire, Botany, BS l969 University of Hawaii, Microbiology, MS l970 State University of New York at Stony Brook, Ecology & Evolution, Ph.D. 1979 Woods Hole Oceanographic Institution, Biological Oceanography, Postdoctoral Scholar l979-l980 Appointments: Professor, University of Maryland Center for Environmental Science 1995-present Associate Professor, Center for Environmental & Estuarine Science, Univ. of Maryland System, 1991-1995 Associate Scientist, Woods Hole Oceanographic Institution, 1984-1991 Assistant Scientist, Woods Hole Oceanographic Institution, l980-1984 Publications –Last three years: Stoecker DK, Long A, Suttles SE, Sanford LP. 2006. Effect of small-scale shear on grazing and growth of the dinoflagellate Pfiesteria piscicida. Harmful Algae 5: 407-418 Stoecker DK, Tillman U, Granéli E. 2006. Chaper 18. Phagotrophic Harmful Algae. Pp. 177-187 in Granéli E and Turner J (eds) Ecology of Harmful Algae, Springer-Verlag, Berlin. Adolf JE, Stoecker DK, Harding LW. 2006. The balance of autotrophy and heterotrophy during mixotrophic growth of Karlodinium micrum (Dinophyceae). J Plankton Res 28: 737-751 Hood, RR, Zhang X, Glibert PM, Roman MR, Stoecker, DK. 2006. Modeling the influence of nutrients, turbulence and grazing on Pfiesteria population dynamics. Harmful Algae 5: 459-479 Johnson MD, Tengs T, Oldach D, Stoecker DK. 2006. Sequestration, performance and functional control of cryptophyte plastids in the ciliate Myrionecta rubra (Ciliophora). J Phycol 42: 1235-1246 Johnson MD, Oldach D, Delwiche CF, Stoecker DK. -
Morphological Studies of the Dinoflagellate Karenia Papilionacea in Culture
MORPHOLOGICAL STUDIES OF THE DINOFLAGELLATE KARENIA PAPILIONACEA IN CULTURE Michelle R. Stuart A Thesis Submitted to the University of North Carolina Wilmington in Partial Fulfillment of the Requirements for the Degree of Master of Science Department of Biology and Marine Biology University of North Carolina Wilmington 2011 Approved by Advisory Committee Alison R. Taylor Richard M. Dillaman Carmelo R. Tomas Chair Accepted by __________________________ Dean, Graduate School This thesis has been prepared in the style and format consistent with the journal Journal of Phycology ii TABLE OF CONTENTS ABSTRACT ................................................................................................................................... iv ACKNOWLEDGMENTS .............................................................................................................. v DEDICATION ............................................................................................................................... vi LIST OF TABLES ........................................................................................................................ vii LIST OF FIGURES ..................................................................................................................... viii INTRODUCTION .......................................................................................................................... 1 MATERIALS AND METHODS .................................................................................................... 5 RESULTS -
Disease of Aquatic Organisms 80:241
DISEASES OF AQUATIC ORGANISMS Vol. 80: 241–258, 2008 Published August 7 Dis Aquat Org COMBINED AUTHOR AND TITLE INDEX (Volumes 71 to 80, 2006–2008) A (2006) Persistence of Piscirickettsia salmonis and detection of serum antibodies to the bacterium in white seabass Atrac- Aarflot L, see Olsen AB et al. (2006) 72:9–17 toscion nobilis following experimental exposure. 73:131–139 Abreu PC, see Eiras JC et al. (2007) 77:255–258 Arunrut N, see Kiatpathomchai W et al. (2007) 79:183–190 Acevedo C, see Silva-Rubio A et al. (2007) 79:27–35 Arzul I, see Carrasco N et al. (2007) 79:65–73 Adams A, see McGurk C et al. (2006) 73:159–169 Arzul I, see Corbeil S et al. (2006) 71:75–80 Adkison MA, see Arkush KD et al. (2006) 73:131–139 Arzul I, see Corbeil S et al. (2006) 71:81–85 Aeby GS, see Work TM et al. (2007) 78:255–264 Ashton KJ, see Kriger KM et al. (2006) 71:149–154 Aguirre WE, see Félix F et al. (2006) 75:259–264 Ashton KJ, see Kriger KM et al. (2006) 73:257–260 Aguirre-Macedo L, see Gullian-Klanian M et al. (2007) 79: Atkinson SD, see Bartholomew JL et al. (2007) 78:137–146 237–247 Aubard G, see Quillet E et al. (2007) 76:7–16 Aiken HM, see Hayward CJ et al. (2007) 79:57–63 Audemard C, Carnegie RB, Burreson EM (2008) Shellfish tis- Aishima N, see Maeno Y et al. (2006) 71:169–173 sues evaluated for Perkinsus spp. -
The Polypeptides COX2A and COX2B Are Essential Components of the Mitochondrial Cytochrome C Oxidase of Toxoplasma Gondii
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Available online at www.sciencedirect.com Biochimica et Biophysica Acta 1777 (2008) 202–210 www.elsevier.com/locate/bbabio The polypeptides COX2A and COX2B are essential components of the mitochondrial cytochrome c oxidase of Toxoplasma gondii Lorena Morales-Sainz a,1, Adelma Escobar-Ramírez a,1, Valentín Cruz-Torres a, Adrián Reyes-Prieto a, Miriam Vázquez-Acevedo a, Reyna Lara-Martínez b, ⁎ Luis Felipe Jiménez-García b, Diego González-Halphen a, a Departamento de Genética Molecular, Instituto de Fisiología Celular, Universidad Nacional Autónoma de México, Mexico b Departamento de Biología Celular, Facultad de Ciencias, Universidad Nacional Autónoma de México, Mexico Received 21 August 2007; received in revised form 6 October 2007; accepted 18 October 2007 Available online 5 November 2007 Abstract Two genes encoding cytochrome c oxidase subunits, Cox2a and Cox2b, are present in the nuclear genomes of apicomplexan parasites and show sequence similarity to corresponding genes in chlorophycean algae. We explored the presence of COX2A and COX2B subunits in the cytochrome c oxidase of Toxoplasma gondii. Antibodies were raised against a synthetic peptide containing a 14-residue fragment of the COX2A polypeptide and against a hexa-histidine-tagged recombinant COX2B protein. Two distinct immunochemical stainings localized the COX2A and COX2B proteins in the parasite's mitochondria. A mitochondria-enriched fraction exhibited cyanide-sensitive oxygen uptake in the presence of succinate. T. gondii mitochondria were solubilized and subjected to Blue Native Electrophoresis followed by second dimension electrophoresis. Selected protein spots from the 2D gels were subjected to mass spectrometry analysis and polypeptides of mitochondrial complexes III, IV and V were identified. -
Associations Between Mesodinium Rubrum and Cryptophyte Algae in the Columbia River Estuary
Vol. 68: 117–130, 2013 AQUATIC MICROBIAL ECOLOGY Published online January 29 doi: 10.3354/ame01598 Aquat Microb Ecol Associations between Mesodinium rubrum and cryptophyte algae in the Columbia River estuary Tawnya D. Peterson1,2,*, Rachel L. Golda1,2, Michael L. Garcia1,2, Binglin Li1,2, Michelle A. Maier1,2, Joseph A. Needoba1,2, Peter Zuber1,2 1Institute of Environmental Health, Division of Environmental and Biomolecular Systems, Oregon Health & Science University, 20000 NW Walker Rd., Beaverton, Oregon 97006, USA 2Science and Technology Center for Coastal Margin Observation and Prediction, 20000 NW Walker Rd., Beaverton, Oregon 97006, USA ABSTRACT: Recurring blooms of the photosynthetic ciliate Mesodinium rubrum (= Myrionecta rubra) are observed each summer in the Columbia River estuary. Although cultured isolates of M. rubrum have been shown to consume cryptophyte prey during growth, the feeding behavior of M. rubrum in the field is poorly known. In the present study, a 3 mo time series of observations from a locale of putative bloom formation (Ilwaco harbor in Baker Bay, WA) showed that crypto- phytes were present at relatively high abundance prior to and during M. rubrum blooms and declined with M. rubrum abundance. During 3 years of observation (summers of 2009, 2010, and 2011), we observed M. rubrum cells bearing numerous cryptophytes attached to the cirri through- out the estuary, especially during the bloom initiation phase and particularly in the peripheral bays. We performed a laboratory investigation in 2011 in which cryptophyte prey were introduced to high-density red-water samples in aquarium tanks. Within 2 h, individual M. rubrum cells collected multiple cryptophytes on their cirri, likely as a precursor to ingestion. -
Scrippsiella Trochoidea (F.Stein) A.R.Loebl
MOLECULAR DIVERSITY AND PHYLOGENY OF THE CALCAREOUS DINOPHYTES (THORACOSPHAERACEAE, PERIDINIALES) Dissertation zur Erlangung des Doktorgrades der Naturwissenschaften (Dr. rer. nat.) der Fakultät für Biologie der Ludwig-Maximilians-Universität München zur Begutachtung vorgelegt von Sylvia Söhner München, im Februar 2013 Erster Gutachter: PD Dr. Marc Gottschling Zweiter Gutachter: Prof. Dr. Susanne Renner Tag der mündlichen Prüfung: 06. Juni 2013 “IF THERE IS LIFE ON MARS, IT MAY BE DISAPPOINTINGLY ORDINARY COMPARED TO SOME BIZARRE EARTHLINGS.” Geoff McFadden 1999, NATURE 1 !"#$%&'(&)'*!%*!+! +"!,-"!'-.&/%)$"-"!0'* 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 2& ")3*'4$%/5%6%*!+1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 7! 8,#$0)"!0'*+&9&6"*,+)-08!+ 111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 :! 5%*%-"$&0*!-'/,)!0'* 11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111 ;! "#$!%"&'(!)*+&,!-!"#$!'./+,#(0$1$!2! './+,#(0$1$!-!3+*,#+4+).014!1/'!3+4$0&41*!041%%.5.01".+/! 67! './+,#(0$1$!-!/&"*.".+/!1/'!4.5$%"(4$! 68! ./!5+0&%!-!"#$!"#+*10+%,#1$*10$1$! 69! "#+*10+%,#1$*10$1$!-!5+%%.4!1/'!$:"1/"!'.;$*%."(! 6<! 3+4$0&41*!,#(4+)$/(!-!0#144$/)$!1/'!0#1/0$! 6=! 1.3%!+5!"#$!"#$%.%! 62! /0+),++0'* 1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111<=!