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Organic Chemistry
Wisebridge Learning Systems Organic Chemistry Reaction Mechanisms Pocket-Book WLS www.wisebridgelearning.com © 2006 J S Wetzel LEARNING STRATEGIES CONTENTS ● The key to building intuition is to develop the habit ALKANES of asking how each particular mechanism reflects Thermal Cracking - Pyrolysis . 1 general principles. Look for the concepts behind Combustion . 1 the chemistry to make organic chemistry more co- Free Radical Halogenation. 2 herent and rewarding. ALKENES Electrophilic Addition of HX to Alkenes . 3 ● Acid Catalyzed Hydration of Alkenes . 4 Exothermic reactions tend to follow pathways Electrophilic Addition of Halogens to Alkenes . 5 where like charges can separate or where un- Halohydrin Formation . 6 like charges can come together. When reading Free Radical Addition of HX to Alkenes . 7 organic chemistry mechanisms, keep the elec- Catalytic Hydrogenation of Alkenes. 8 tronegativities of the elements and their valence Oxidation of Alkenes to Vicinal Diols. 9 electron configurations always in your mind. Try Oxidative Cleavage of Alkenes . 10 to nterpret electron movement in terms of energy Ozonolysis of Alkenes . 10 Allylic Halogenation . 11 to make the reactions easier to understand and Oxymercuration-Demercuration . 13 remember. Hydroboration of Alkenes . 14 ALKYNES ● For MCAT preparation, pay special attention to Electrophilic Addition of HX to Alkynes . 15 Hydration of Alkynes. 15 reactions where the product hinges on regio- Free Radical Addition of HX to Alkynes . 16 and stereo-selectivity and reactions involving Electrophilic Halogenation of Alkynes. 16 resonant intermediates, which are special favor- Hydroboration of Alkynes . 17 ites of the test-writers. Catalytic Hydrogenation of Alkynes. 17 Reduction of Alkynes with Alkali Metal/Ammonia . 18 Formation and Use of Acetylide Anion Nucleophiles . -
Solvent Effects on Structure and Reaction Mechanism: a Theoretical Study of [2 + 2] Polar Cycloaddition Between Ketene and Imine
J. Phys. Chem. B 1998, 102, 7877-7881 7877 Solvent Effects on Structure and Reaction Mechanism: A Theoretical Study of [2 + 2] Polar Cycloaddition between Ketene and Imine Thanh N. Truong Henry Eyring Center for Theoretical Chemistry, Department of Chemistry, UniVersity of Utah, Salt Lake City, Utah 84112 ReceiVed: March 25, 1998; In Final Form: July 17, 1998 The effects of aqueous solvent on structures and mechanism of the [2 + 2] cycloaddition between ketene and imine were investigated by using correlated MP2 and MP4 levels of ab initio molecular orbital theory in conjunction with the dielectric continuum Generalized Conductor-like Screening Model (GCOSMO) for solvation. We found that reactions in the gas phase and in aqueous solution have very different topology on the free energy surfaces but have similar characteristic motion along the reaction coordinate. First, it involves formation of a planar trans-conformation zwitterionic complex, then a rotation of the two moieties to form the cycloaddition product. Aqueous solvent significantly stabilizes the zwitterionic complex, consequently changing the topology of the free energy surface from a gas-phase single barrier (one-step) process to a double barrier (two-step) one with a stable intermediate. Electrostatic solvent-solute interaction was found to be the dominant factor in lowering the activation energy by 4.5 kcal/mol. The present calculated results are consistent with previous experimental data. Introduction Lim and Jorgensen have also carried out free energy perturbation (FEP) theory simulations with accurate force field that includes + [2 2] cycloaddition reactions are useful synthetic routes to solute polarization effects and found even much larger solvent - formation of four-membered rings. -
The Development and Application of Metal-Catalyzed Processes for Organic Synthesis
The Development and Application of Metal-Catalyzed Processes for Organic Synthesis by Edward J. Hennessy B.A. Chemistry Northwestern University, 2000 Submitted to the Department of Chemistry in Partial Fulfillment of the Requirements for the Degree of DOCTOR OF PHILOSOPHY IN ORGANIC CHEMISTRY at the Massachusetts Institute of Technology June 2005 © 2005 Massachusetts Institute of Technology All Rights Reserved Signature of Author: " - - 1_"' .Da-uirnt of Chemistry May 19, 2005 Certified by: Stephen L. Buchwald Camille Dreyfus Professor of Chemistry Thesis Supervisor Accepted by: Robert W. Field Chairman, Departmental Committee on Graduate Students ARCHIVES: This doctoral thesis has been examined by a committee of the Department of Chemistry as follows: -/ Professor Gregory C. Fu: " Ch Chair Professor Stephen L. Buchwald Thesis Supervisor Professor Timothy M. Swager: , -L i \ O 2 The Development and Application of Metal-Catalyzed Processes for Organic Synthesis by Edward J. Hennessy Submitted to the Department of Chemistry on May 19, 2005 in Partial Fulfillment of the Requirements for the Degree of Doctor of Philosophy at the Massachusetts Institute of Technology ABSTRACT Chapter 1. Copper-Catalyzed Arylation of Stabilized Carbanions A mild, general catalytic system for the synthesis of a-aryl malonates has been developed. Aryl iodides bearing a variety of functional groups can be effectively coupled to diethyl malonate in high yields using inexpensive and widely available reagents, making this a superior method to those previously described that employ copper reagents or catalysts. The functional group tolerance of the process developed makes it complementary to analogous palladium-catalyzed couplings. Importantly, a set of mild reaction conditions has been developed that minimize product decomposition, a problem that had not been addressed previously in the literature. -
Chemistry 0310 - Organic Chemistry 1 Chapter 6
Dr. Peter Wipf Chemistry 0310 - Organic Chemistry 1 Chapter 6. SN2 Reactions Nucleophilic substitution reactions occur when nucleophiles (electron-rich species) displace leaving groups on electrophiles (electron-poor species). The net result is the substitution of one group for another bonded to a carbon atom. Nucleophilicity is increased by a negative charge and an increase in the polarizability. The greater the size and the lower the electronegativity of an atom, the greater its polarizability. Leaving groups are stable species that can be detached with their bonding electrons from a molecule during reaction. Most good leaving groups are the conjugate bases of strong acids. Sulfonates (mesylates, tosylates, triflates, etc.) are popular leaving groups since they can be readily obtained from alcohols. Solvents also influence nucleophilicity. SN2 reactions are second-order reactions whose rates depend o the concentration of both the alkyl halide and the nucleophile. The transition state of the one-step SN2 process involves a trigonal bipyramidal carbon and results in an overall inversion of configuration. The order of reactivity of alkyl halides and alkyl sulfonates in SN2 reactions is CH3>1°>2°>3°. The activation energy, DG‡, determines the rate of a reaction: k = koexp(-DG‡/RT). The overall change in free energy, DG, determines the position of the thermodynamic equilibrium. A positive sign of DG is characteristic for an endergonic reaction, a negative DG is found for an exergonic process. The rate of a reaction can be measured and provides information about its mechanism. The reaction order is the sum of the exponents in the rate equation. Relative Leaving Group Abilities: Leaving Group Common Name krel AcO acetate 1 x 10-10 Cl chloride 0.0001 Br bromide 0.001 I iodide 0.01 O mesylate 1.00 H3C S O O O tosylate 0.70 H3C S O O O brosylate 2.62 Br S O O O nosylate 13 O2N S O O O fluorosulfate 29,000 F S O O O triflate 56,000 CF3 S O O O nonaflate 120,000 C4F9 S O O. -
Nucleophilic Aromatic Substitution
NUCLEOPHILIC AROMATIC SUBSTITUTION Ms. Prerana Sanas M.Pharm (Pharmceutical Chemistry) Asst.Professor, NCRD’s Sterling Institute of Pharmacy Nerul Navi Mumbai Nucleophilic aromatic substitution results in the substitution of a halogen X on a benzene ring by a nucleophile (:Nu– ). Aryl halides undergo a limited number of substitution reactions with strong nucleophiles. NAS occurs by two mechanisms i) Bimoleccular displacement (Addition –Elimination) ii) Benzyne Formation( Elimination –Addition) 7/5/2019 Ms.Prerana Sanas 2 Bimolecular displacement (Addition – Elimination) Aryl halides with strong electron-withdrawing groups (such as NO2) on the ortho or para positions react with nucleophiles to afford substitution products. For example, treatment of p-chloronitrobenzene with hydroxide (– OH) affords p-nitrophenol by replacement of Cl by OH. Nucleophilic aromatic substitution occurs with a variety of strong nucleophiles, including – OH, – OR, – NH2, – SR, and in some cases, neutral nucleophiles such as NH3 and RNH2 . 7/5/2019 Ms.Prerana Sanas 3 Mechanism…… The mechanism of these reactions has two steps: Step i) Addition of the nucleophile (:Nu– ) forms a resonance-stabilized carbanion with a new C – Nu bond—three resonance structures can be drawn. • Step [1] is rate-determining since the aromaticity of the benzene ring is lost. In Step ii) loss of the leaving group re-forms the aromatic ring. This step is fast because the aromaticity of the benzene ring is restored. 7/5/2019 Ms.Prerana Sanas 4 Factors affecting Bimolecular displacement Increasing the number of electron-withdrawing groups increases the reactivity of the aryl halide. Electron-withdrawing groups stabilize the intermediate carbanion, and by the Hammond postulate, lower the energy of the transition state that forms it. -
Recent Advances in the Direct Nucleophilic Substitution of Allylic
SHORT REVIEW ▌25 Recentshort review Advances in the Direct Nucleophilic Substitution of Allylic Alcohols through SN1-Type Reactions AlejandroSN1 Reactions of Allylic Alcohols Baeza,* Carmen Nájera* Departamento de Química Orgánica and Instituto de Síntesis Orgánica, University of Alicante, Apdo.99, 03080 Alicante, Spain Fax +34(965)903549; E-mail: [email protected]; E-mail: [email protected] Received: 03.10.2013; Accepted after revision: 06.11.2013 Abstract: Direct nucleophilic substitution reactions of allylic alco- hols are environmentally friendly, since they generate only water as a byproduct, allowing access to new allylic compounds. This reac- tion has, thus, attracted the interest of the chemical community and several strategies have been developed for its successful accom- plishment. This review gathers the latest advances in this methodol- ogy involving SN1-type reactions. 1 Introduction 2SN1-Type Direct Nucleophilic Substitution Reactions of Allylic Alcohols 2.1 Lewis Acids as Catalysts Alejandro Baeza was born in Alicante (Spain) in 1979. He studied 2.2 Brønsted Acids as Catalysts chemistry at the University of Alicante and he received his M.Sc. (2003) and Ph. D. degrees (2006) from here under the supervision of 2.3 Other Promoters Prof. José Miguel Sansano and Prof. Carmen Nájera. He was a post- 3 Conclusions and Outlook doctoral researcher in Prof. Pfaltz’s research group (2007–2010). In 2010 he returned to Alicante and joined the research group of Prof. Key words: S 1 reaction, allylic substitution, carbocations, allylic N Carmen Nájera. His main research interests focus on the development alcohols, green chemistry of new environmentally friendly methodologies, especially in asym- metric synthesis. -
Bsc Chemistry
Subject Chemistry Paper No and Title 05, ORGANIC CHEMISTRY-II (REACTION MECHANISM-I) Module No and Title 15, The Neighbouring Mechanism, Neighbouring Group Participation by π and σ Bonds Module Tag CHE_P5_M15 CHEMISTRY PAPER :5, ORGANIC CHEMISTRY-II (REACTION MECHANISM-I) MODULE: 15 , The Neighbouring Mechanism, Neighbouring Group Participation by π and σ Bonds TABLE OF CONTENTS 1. Learning Outcomes 2. Introduction 3. NGP Participation 3.1 NGP by Heteroatom Lone Pairs 3.2 NGP by alkene 3.3 NGP by Cyclopropane, Cyclobutane or a Homoallyl group 3.4 NGP by an Aromatic Ring 4. Neighbouring Group Participation on SN2 Reactions 5. Neighbouring Group Participation on SN1 Reactions 6. Neighbouring Group and Rearrangement 7. Examples 8. Summary CHEMISTRY PAPER :5, ORGANIC CHEMISTRY-II (REACTION MECHANISM-I) MODULE: 15 , The Neighbouring Mechanism, Neighbouring Group Participation by π and σ Bonds 1. Learning Outcomes After studying this module, you shall be able to Know about NGP reaction Learn reaction mechanism of NGP reaction Identify stereochemistry of NGP reaction Evaluate the factors affecting the NGP reaction Analyse Phenonium ion, NGP by alkene, and NGP by heteroatom. 2. Introduction The reaction centre (carbenium centre) has direct interaction with a lone pair of electrons of an atom or with the electrons of s- or p-bond present within the parent molecule but these are not in conjugation with the reaction centre. A distinction is sometimes made between n, s and p- participation. An increase in rate due to Neighbouring Group Participation (NGP) is known as "anchimeric assistance". "Synartetic acceleration" happens to be the special case of anchimeric assistance and applies to participation by electrons binding a substituent to a carbon atom in a β- position relative to the leaving group attached to the α-carbon atom. -
The Total Synthesis of Securinine and Other Methodology Studies
University of Windsor Scholarship at UWindsor Electronic Theses and Dissertations Theses, Dissertations, and Major Papers 2010 The total synthesis of securinine and other methodology studies Bhartesh Dhudshia University of Windsor Follow this and additional works at: https://scholar.uwindsor.ca/etd Recommended Citation Dhudshia, Bhartesh, "The total synthesis of securinine and other methodology studies" (2010). Electronic Theses and Dissertations. 8275. https://scholar.uwindsor.ca/etd/8275 This online database contains the full-text of PhD dissertations and Masters’ theses of University of Windsor students from 1954 forward. These documents are made available for personal study and research purposes only, in accordance with the Canadian Copyright Act and the Creative Commons license—CC BY-NC-ND (Attribution, Non-Commercial, No Derivative Works). Under this license, works must always be attributed to the copyright holder (original author), cannot be used for any commercial purposes, and may not be altered. Any other use would require the permission of the copyright holder. Students may inquire about withdrawing their dissertation and/or thesis from this database. For additional inquiries, please contact the repository administrator via email ([email protected]) or by telephone at 519-253-3000ext. 3208. The Total Synthesis of Securinine and Other Methodology Studies by Bhartesh Dhudshia A Dissertation Submitted to the Faculty of Graduate Studies through the Department of Chemistry and Biochemistry in Partial Fulfillment of the Requirements -
Organic Synthesis: New Vistas in the Brazilian Landscape
Anais da Academia Brasileira de Ciências (2018) 90(1 Suppl. 1): 895-941 (Annals of the Brazilian Academy of Sciences) Printed version ISSN 0001-3765 / Online version ISSN 1678-2690 http://dx.doi.org/10.1590/0001-3765201820170564 www.scielo.br/aabc | www.fb.com/aabcjournal Organic Synthesis: New Vistas in the Brazilian Landscape RONALDO A. PILLI and FRANCISCO F. DE ASSIS Instituto de Química, UNICAMP, Rua José de Castro, s/n, 13083-970 Campinas, SP, Brazil Manuscript received on September 11, 2017; accepted for publication on December 29, 2017 ABSTRACT In this overview, we present our analysis of the future of organic synthesis in Brazil, a highly innovative and strategic area of research which underpins our social and economical progress. Several different topics (automation, catalysis, green chemistry, scalability, methodological studies and total syntheses) were considered to hold promise for the future advance of chemical sciences in Brazil. In order to put it in perspective, contributions from Brazilian laboratories were selected by the citations received and importance for the field and were benchmarked against some of the most important results disclosed by authors worldwide. The picture that emerged reveals a thriving area of research, with new generations of well-trained and productive chemists engaged particularly in the areas of green chemistry and catalysis. In order to fulfill the promise of delivering more efficient and sustainable processes, an integration of the academic and industrial research agendas is to be expected. On the other hand, academic research in automation of chemical processes, a well established topic of investigation in industrial settings, has just recently began in Brazil and more academic laboratories are lining up to contribute. -
Leaving Group of Substrate Important
1 Recap... • Last two lectures we looked at substitution reactions • We found that there we two (extreme) mechanisms • SN1 H H H H H PhS R H R Br R SPh Br • And SN2 H H H H PhS + Br R Br PhS R • We looked at many of the factors that influenced which ..mechanism was operating... • Now we will turn our attention to elimination reactions 2 Elimination reactions NaOH NaOH or low Br H2O OH concentration • You have seen SN1 substitution • Reaction not sped up by altering nucleophile - it is not in RDS • In fact if we increase the amount / concentration of nucleophile we get the following... high O H + + + Br Br OH concentration H H • We observe an elimination reaction • Overall HBr is lost from the molecule • Isn't chemistry fun - these are the same conditions as substitution! • Next two lectures will look at the mechanisms for elimination • And how we control the nature of the reaction we observe... 3 Elimination, bimolecular E2 O H Br HO Br H H • E2 - Elimination bimolecular or 2nd order reaction • 2 molecules in the RDS or transition state H H H H H C H C H H C Br Br H O H C H O H C C H H H H C H C H H H • Two molecules in the rate determining step • So both the base and the substrate control the reaction • Both carbon skeleton & leaving group of substrate important In substitutions nucleophile acts as a nucleophile & attacks carbon In eliminations nucleophile acts as a base & attacks proton 4 Elimination, bimolecular E2: MO • Little confusing as need bonding & anti-bonding in same diagram! • Orbitals need to be parallel for maximum overlap -
Carbonyl Chemistry I: Additions to Carbonyl Groups
Paul Bracher Chem 30 – Section 4 Carbonyl Chemistry I: Additions to Carbonyl Groups Section Agenda 1) Lessons from Exam I, Course Feedbeck Mechanism on Web Site 2) Carbonyl Groups: Structure, Bonding, Molecular Orbitals, Geometry, Reactivity 3) Handout: In-Section Problem Set 4) Handout: In-Section Solution Set 5) Weekly Office Hours: Thursday, 3-4PM and 8-9PM, in Bauer Lobby Structure and Bonding · Carbonyl carbons are roughly sp2 hybridized Molecular Orbital Picture and planar with bond angles near 120 degrees bonding p orbital antibonding p* orbital · The C=O p bond is formed by the overlap of two unhybridized p orbitals. The bond is polarized due to the different electronegativities of carbon and oxygen. 105 o Resonance Model O O Bürgi-Dunitz angle · Another way to picture carbonyl groups is I II through an MO picture. Since the coefficient of · Resonance form II suggests that the carbon pO’s contribution is greater in pC=O, then atom is surrounded by less negative charge conservation of blending atomic orbitals into density than oxygen, rendering the carbon more molecular orbitals tells you that pC must be a electrophilic. larger contributor to the p*C=O orbital. · When reagents add to carbonyl double bonds, · The larger coefficient on oxygen in the filled the nucleophile attacks the carbon atom. orbital explains why the oxygen atom behaves as a Lewis base (it commonly complexes with · Due to the increased negative charge density Lewis acids). The larger coefficient on carbon on oxygen, Lewis acids (such as protons) in the empty antibonding orbital explains why it commonly complex with oxygen. -
Reaction Kinetics in Organic Reactions
Autumn 2004 Reaction Kinetics in Organic Reactions Why are kinetic analyses important? • Consider two classic examples in asymmetric catalysis: geraniol epoxidation 5-10% Ti(O-i-C3H7)4 O DET OH * * OH + TBHP CH2Cl2 3A mol sieve OH COOH5C2 L-(+)-DET = OH COOH5C2 * OH geraniol hydrogenation OH 0.1% Ru(II)-BINAP + H2 CH3OH P(C6H5)2 (S)-BINAP = P(C6 H5)2 • In both cases, high enantioselectivities may be achieved. However, there are fundamental differences between these two reactions which kinetics can inform us about. 1 Autumn 2004 Kinetics of Asymmetric Catalytic Reactions geraniol epoxidation: • enantioselectivity is controlled primarily by the preferred mode of initial binding of the prochiral substrate and, therefore, the relative stability of intermediate species. The transition state resembles the intermediate species. Finn and Sharpless in Asymmetric Synthesis, Morrison, J.D., ed., Academic Press: New York, 1986, v. 5, p. 247. geraniol hydrogenation: • enantioselectivity may be dictated by the relative reactivity rather than the stability of the intermediate species. The transition state may not resemble the intermediate species. for example, hydrogenation of enamides using Rh+(dipamp) studied by Landis and Halpern (JACS, 1987, 109,1746) 2 Autumn 2004 Kinetics of Asymmetric Catalytic Reactions “Asymmetric catalysis is four-dimensional chemistry. Simple stereochemical scrutiny of the substrate or reagent is not enough. The high efficiency that these reactions provide can only be achieved through a combination of both an ideal three-dimensional structure (x,y,z) and suitable kinetics (t).” R. Noyori, Asymmetric Catalysis in Organic Synthesis,Wiley-Interscience: New York, 1994, p.3. “Studying the photograph of a racehorse cannot tell you how fast it can run.” J.