The Accutof™-DART® 4G: the Ambient Ionization Toolbox™
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Multiplatform Investigation of Plasma and Tissue Lipid Signatures of Breast Cancer Using Mass Spectrometry Tools
International Journal of Molecular Sciences Article Multiplatform Investigation of Plasma and Tissue Lipid Signatures of Breast Cancer Using Mass Spectrometry Tools 1, 2, 2 3 Alex Ap. Rosini Silva y, Marcella R. Cardoso y , Luciana Montes Rezende , John Q. Lin , Fernando Guimaraes 2 , Geisilene R. Paiva Silva 4, Michael Murgu 5, Denise Gonçalves Priolli 1, Marcos N. Eberlin 6, Alessandra Tata 7, Livia S. Eberlin 3 , Sophie F. M. Derchain 2 and Andreia M. Porcari 1,* 1 Postgraduate Program of Health Sciences, São Francisco University, Bragança Paulista SP 12916-900, Brazil; [email protected] (A.A.R.S.); [email protected] (D.G.P.) 2 Department of Gynecological and Breast Oncology, Women’s Hospital (CAISM), Faculty of Medical Sciences, State University of Campinas (UNICAMP), Campinas SP 13083-881, Brazil; [email protected] (M.R.C.); [email protected] (L.M.R.); [email protected] (F.G.); [email protected] (S.F.M.D.) 3 Department of Chemistry, The University of Texas at Austin, Austin, TX 78712, USA; [email protected] (J.Q.L.); [email protected] (L.S.E.) 4 Laboratory of Molecular and Investigative Pathology—LAPE, Women’s Hospital (CAISM), Faculty of Medical Sciences, State University of Campinas (UNICAMP), Campinas SP 13083-881, Brazil; [email protected] 5 Waters Corporation, São Paulo, SP 13083-970, Brazil; [email protected] 6 School of Engineering, Mackenzie Presbyterian University, São Paulo SP 01302-907, Brazil; [email protected] 7 Laboratorio di Chimica Sperimentale, Istituto Zooprofilattico Sperimentale delle Venezie, Viale Fiume 78, 36100 Vicenza, Italy; [email protected] * Correspondence: [email protected]; Tel.: +55-11-2454-8047 These authors contributed equally to this work. -
Electron Ionization
Chapter 6 Chapter 6 Electron Ionization I. Introduction ......................................................................................................317 II. Ionization Process............................................................................................317 III. Strategy for Data Interpretation......................................................................321 1. Assumptions 2. The Ionization Process IV. Types of Fragmentation Pathways.................................................................328 1. Sigma-Bond Cleavage 2. Homolytic or Radical-Site-Driven Cleavage 3. Heterolytic or Charge-Site-Driven Cleavage 4. Rearrangements A. Hydrogen-Shift Rearrangements B. Hydride-Shift Rearrangements V. Representative Fragmentations (Spectra) of Classes of Compounds.......... 344 1. Hydrocarbons A. Saturated Hydrocarbons 1) Straight-Chain Hydrocarbons 2) Branched Hydrocarbons 3) Cyclic Hydrocarbons B. Unsaturated C. Aromatic 2. Alkyl Halides 3. Oxygen-Containing Compounds A. Aliphatic Alcohols B. Aliphatic Ethers C. Aromatic Alcohols D. Cyclic Ethers E. Ketones and Aldehydes F. Aliphatic Acids and Esters G. Aromatic Acids and Esters 4. Nitrogen-Containing Compounds A. Aliphatic Amines B. Aromatic Compounds Containing Atoms of Nitrogen C. Heterocyclic Nitrogen-Containing Compounds D. Nitro Compounds E. Concluding Remarks on the Mass Spectra of Nitrogen-Containing Compounds 5. Multiple Heteroatoms or Heteroatoms and a Double Bond 6. Trimethylsilyl Derivative 7. Determining the Location of Double Bonds VI. Library -
Modern Mass Spectrometry
Modern Mass Spectrometry MacMillan Group Meeting 2005 Sandra Lee Key References: E. Uggerud, S. Petrie, D. K. Bohme, F. Turecek, D. Schröder, H. Schwarz, D. Plattner, T. Wyttenbach, M. T. Bowers, P. B. Armentrout, S. A. Truger, T. Junker, G. Suizdak, Mark Brönstrup. Topics in Current Chemistry: Modern Mass Spectroscopy, pp. 1-302, 225. Springer-Verlag, Berlin, 2003. Current Topics in Organic Chemistry 2003, 15, 1503-1624 1 The Basics of Mass Spectroscopy ! Purpose Mass spectrometers use the difference in mass-to-charge ratio (m/z) of ionized atoms or molecules to separate them. Therefore, mass spectroscopy allows quantitation of atoms or molecules and provides structural information by the identification of distinctive fragmentation patterns. The general operation of a mass spectrometer is: "1. " create gas-phase ions "2. " separate the ions in space or time based on their mass-to-charge ratio "3. " measure the quantity of ions of each mass-to-charge ratio Ionization sources ! Instrumentation Chemical Ionisation (CI) Atmospheric Pressure CI!(APCI) Electron Impact!(EI) Electrospray Ionization!(ESI) SORTING DETECTION IONIZATION OF IONS OF IONS Fast Atom Bombardment (FAB) Field Desorption/Field Ionisation (FD/FI) Matrix Assisted Laser Desorption gaseous mass ion Ionisation!(MALDI) ion source analyzer transducer Thermospray Ionisation (TI) Analyzers quadrupoles vacuum signal Time-of-Flight (TOF) pump processor magnetic sectors 10-5– 10-8 torr Fourier transform and quadrupole ion traps inlet Detectors mass electron multiplier spectrum Faraday cup Ionization Sources: Classical Methods ! Electron Impact Ionization A beam of electrons passes through a gas-phase sample and collides with neutral analyte molcules (M) to produce a positively charged ion or a fragment ion. -
Portable Mass Spectrometry
Food Analytical Methods https://doi.org/10.1007/s12161-019-01666-6 Potential of Recent Ambient Ionization Techniques for Future Food Contaminant Analysis Using (Trans)Portable Mass Spectrometry Marco H. Blokland1 & Arjen Gerssen1 & Paul W. Zoontjes1 & Janusz Pawliszyn2 & Michel W.F. Nielen1,3 Received: 3 June 2019 /Accepted: 31 October 2019 # The Author(s) 2019 Abstract In food analysis, a trend towards on-site testing of quality and safety parameters is emerging. So far, on-site testing has been mainly explored by miniaturized optical spectroscopy and ligand-binding assay approaches such as lateral flow immunoassays and biosensors. However, for the analysis of multiple parameters at regulatory levels, mass spectrometry (MS) is the method of choice in food testing laboratories. Thanks to recent developments in ambient ionization and upcoming miniaturization of mass analyzers, (trans)portable mass spectrometry may be added to the toolkit for on-site testing and eventually compete with multiplex immunoassays in mixture analysis. In this study, we preliminary evaluated a selection of recent ambient ionization techniques for their potential in simplified testing of selected food contaminants such as pesticides, veterinary drugs, and natural toxins, aiming for a minimum in sample preparation while maintaining acceptable sensitivity and robustness. Matrix-assisted inlet ionization (MAI), handheld desorption atmospheric pressure chemical ionization (DAPCI), transmission-mode direct analysis in real time (TM-DART), and coated blade spray (CBS) were coupled to both benchtop Orbitrap and compact quad- rupole single-stage mass analyzers, while CBS was also briefly studied on a benchtop triple-quadrupole MS. From the results, it can be concluded that for solid and liquid sample transmission configurations provide the highest sensitivity while upon addition ofastationaryphase,suchasinCBS,evenlowμg/L levels in urine samples can be achieved provided the additional selectivity of tandem mass spectrometry is exploited. -
An Organic Chemist's Guide to Electrospray Mass Spectrometric
molecules Review An Organic Chemist’s Guide to Electrospray Mass Spectrometric Structure Elucidation Arnold Steckel 1 and Gitta Schlosser 2,* 1 Hevesy György PhD School of Chemistry, ELTE Eötvös Loránd University, Pázmány Péter sétány 1/A, 1117 Budapest, Hungary; [email protected] 2 Department of Analytical Chemistry, ELTE Eötvös Loránd University, Pázmány Péter sétány 1/A, 1117 Budapest, Hungary * Correspondence: [email protected] Received: 16 January 2019; Accepted: 8 February 2019; Published: 10 February 2019 Abstract: Tandem mass spectrometry is an important tool for structure elucidation of natural and synthetic organic products. Fragmentation of odd electron ions (OE+) generated by electron ionization (EI) was extensively studied in the last few decades, however there are only a few systematic reviews available concerning the fragmentation of even-electron ions (EE+/EE−) produced by the currently most common ionization techniques, electrospray ionization (ESI) and atmospheric pressure chemical ionization (APCI). This review summarizes the most important features of tandem mass spectra generated by collision-induced dissociation fragmentation and presents didactic examples for the unexperienced users. Keywords: tandem mass spectrometry; MS/MS fragmentation; collision-induced dissociation; CID; ESI; structure elucidation 1. Introduction Electron ionization (EI), a hard ionization technique, is the method of choice for analyses of small (<1000 Da), nonpolar, volatile compounds. As its name implies, the technique involves ionization by electrons with ~70 eV energy. This energy is high enough to yield very reproducible mass spectra with a large number of fragments. However, these spectra frequently lack the radical type molecular ions (M+) due to the high internal energy transferred to the precursors [1]. -
Methods of Ion Generation
Chem. Rev. 2001, 101, 361−375 361 Methods of Ion Generation Marvin L. Vestal PE Biosystems, Framingham, Massachusetts 01701 Received May 24, 2000 Contents I. Introduction 361 II. Atomic Ions 362 A. Thermal Ionization 362 B. Spark Source 362 C. Plasma Sources 362 D. Glow Discharge 362 E. Inductively Coupled Plasma (ICP) 363 III. Molecular Ions from Volatile Samples. 364 A. Electron Ionization (EI) 364 B. Chemical Ionization (CI) 365 C. Photoionization (PI) 367 D. Field Ionization (FI) 367 IV. Molecular Ions from Nonvolatile Samples 367 Marvin L. Vestal received his B.S. and M.S. degrees, 1958 and 1960, A. Spray Techniques 367 respectively, in Engineering Sciences from Purdue Univesity, Layfayette, IN. In 1975 he received his Ph.D. degree in Chemical Physics from the B. Electrospray 367 University of Utah, Salt Lake City. From 1958 to 1960 he was a Scientist C. Desorption from Surfaces 369 at Johnston Laboratories, Inc., in Layfayette, IN. From 1960 to 1967 he D. High-Energy Particle Impact 369 became Senior Scientist at Johnston Laboratories, Inc., in Baltimore, MD. E. Low-Energy Particle Impact 370 From 1960 to 1962 he was a Graduate Student in the Department of Physics at John Hopkins University. From 1967 to 1970 he was Vice F. Low-Energy Impact with Liquid Surfaces 371 President at Scientific Research Instruments, Corp. in Baltimore, MD. From G. Flow FAB 371 1970 to 1975 he was a Graduate Student and Research Instructor at the H. Laser Ionization−MALDI 371 University of Utah, Salt Lake City. From 1976 to 1981 he became I. -
1 Introduction of Mass Spectrometry and Ambient Ionization Techniques
1 1 Introduction of Mass Spectrometry and Ambient Ionization Techniques Yiyang Dong, Jiahui Liu, and Tianyang Guo College of Life Science & Technology, Beijing University of Chemical Technology, No. 15 Beisanhuan East Road, Chaoyang District, Beijing, 100029, China 1.1 Evolution of Analytical Chemistry and Its Challenges in the Twenty-First Century The Chemical Revolution began in the eighteenth century, with the work of French chemist Antoine Lavoisier (1743–1794) representing a fundamental watershed that separated the “modern chemistry” era from the “protochemistry” era (Figure 1.1). However, analytical chemistry, a subdiscipline of chemistry, is an ancient science and its metrological tools, basic applications, and analytical processes can be dated back to early recorded history [1]. In chronological spans covering ancient times, the middle ages, the era of the nineteenth century, and the three chemical revolutionary periods, analytical chemistry has successfully evolved from the verge of the nineteenth century to modern and contemporary times, characterized by its versatile traits and unprecedented challenges in the twenty-first century. Historically, analytical chemistry can be termed as the mother of chemistry, as the nature and the composition of materials are always needed to be iden- tified first for specific utilizations subsequently; therefore, the development of analytical chemistry has always been ahead of general chemistry [2]. During pre-Hellenistic times when chemistry did not exist as a science, various ana- lytical processes, for example, qualitative touchstone method and quantitative fire-assay or cupellation scheme have been in existence as routine quality control measures for the purpose of noble goods authentication and anti-counterfeiting practices. Because of the unavailability of archeological clues for origin tracing, the chemical balance and the weights, as stated in the earliest documents ever found, was supposed to have been used only by the Gods [3]. -
Electrification Ionization: Fundamentals and Applications
Louisiana State University LSU Digital Commons LSU Doctoral Dissertations Graduate School 11-12-2019 Electrification Ionization: undamentalsF and Applications Bijay Kumar Banstola Louisiana State University and Agricultural and Mechanical College Follow this and additional works at: https://digitalcommons.lsu.edu/gradschool_dissertations Part of the Analytical Chemistry Commons Recommended Citation Banstola, Bijay Kumar, "Electrification Ionization: undamentalsF and Applications" (2019). LSU Doctoral Dissertations. 5103. https://digitalcommons.lsu.edu/gradschool_dissertations/5103 This Dissertation is brought to you for free and open access by the Graduate School at LSU Digital Commons. It has been accepted for inclusion in LSU Doctoral Dissertations by an authorized graduate school editor of LSU Digital Commons. For more information, please [email protected]. ELECTRIFICATION IONIZATION: FUNDAMENTALS AND APPLICATIONS A Dissertation Submitted to the Graduate Faculty of the Louisiana State University and Agricultural and Mechanical College in partial fulfillment of the requirements for the degree of Doctor of Philosophy in The Department of Chemistry by Bijay Kumar Banstola B. Sc., Northwestern State University of Louisiana, 2011 December 2019 This dissertation is dedicated to my parents: Tikaram and Shova Banstola my wife: Laxmi Kandel ii ACKNOWLEDGEMENTS I thank my advisor Professor Kermit K. Murray, for his continuous support and guidance throughout my Ph.D. program. Without his unwavering guidance and continuous help and encouragement, I could not have completed this program. I am also thankful to my committee members, Professor Isiah M. Warner, Professor Kenneth Lopata, and Professor Shengli Chen. I thank Dr. Fabrizio Donnarumma for his assistance and valuable insights to overcome the hurdles throughout my program. I appreciate Miss Connie David and Dr. -
Construction of a Versatile High Precision Ambient Ionization Source for Direct Analysis and Imaging
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Construction of a Versatile High Precision Ambient Ionization Source for Direct Analysis and Imaging Jason S. Sampson, Adam M. Hawkridge, and David C. Muddiman W. M. Keck FT-ICR Mass Spectrometry Laboratory, Department of Chemistry, North Carolina State University, Raleigh, North Carolina, USA The design and construction of a high precision ambient ionization source matrix-assisted laser desorption electrospray ionization (MALDESI) are described in full detail, including a complete parts list. The computer controlled high precision motion control system and high repetition rate Explorer laser are demonstrated during MALDESI-FT-ICR analysis of peptides and proteins ranging from 1 to 17 kDa. The high stability ionization source platform described herein demonstrates both the advantages of the new MALDESI source and versatility for application to numerous desorption and ionization techniques. (J Am Soc Mass Spectrom 2008, 19, 1527–1534) © 2008 American Society for Mass Spectrometry he introduction and development of hybridMS/MS am- analysis where peak widths (i.e., analysis bient ionization sources such as laser desorptiontimes) are about 10 to 30 s. Tatmospheric pressure ionization (LDAPI)[1, 2], The advancement and acceptance of MALDESI and fused droplet electrospray ionization/extraction elec-related hybrid ionization techniques are critically de- trospray (FD-ESI, EESI)[3, 4], direct analysis in realpendent on the widespread dissemination of detailed time (DART)[5] , desorption electrospray ionizationsource designs such that results can be reproduced and (DESI) [6], electrospray assisted laser desorption ioniza-improved in a variety of laboratories. -
Classification of Ion Sources
Classification of Ion Sources R. Scrivens CERN, Geneva, Switzerland Abstract In this chapter, the anatomy of an ion source is briefly described, as well as a few features of particle motion in electric and magnetic fields, and of particle dynamics and plasmas. Using this information, different types of ion sources are described, highlighting their main mode of operation. 1 Introduction The generation of ions for an ion source is based fundamentally on three main processes, which are i) electron impact ionization, ii) photo-induced ionization and iii) surface ionization. In addition to these, some other atomic and molecular processes can be the process leading to ion extraction, for example, charge exchange between ions and atoms, and molecular dissociation into atoms and ions. Ion sources have always been soundly rooted in the research arena, which has led to continual optimization of the design for each application type and results in an enormous array of ion source types (just a few of which are shown in Fig. 1). In this chapter we will journey through the main different types of ion source, dealing with the main physical processes required for each source to work. To do this, ion sources will be classified into the following general types: • electron bombardment, • d.c./pulsed plasma discharge, • radio-frequency (RF) discharge, • microwave and electron cyclotron resonance (ECR), • laser driven, • surface and • charge exchange. Several excellent books on ion sources exist, but, for the most part, Bernhard Wolf’s book Handbook of Ion Sources [1] has been used as the main source of information for this chapter. -
Ambient Mass Spectrometry for Forensic Analysis
Central Annals of Forensic Research and Analysis Bringing Excellence in Open Access Review Article *Corresponding author Huanwen Chen, Department of Applied Chemistry, East China Institute of Technology, 56 Xuefu Road, Fuzhou Ambient Mass Spectrometry for 344000, China, Submitted: 13 February 2015 Forensic Analysis Accepted: 10 August 2015 Published: 03 October 2015 1 2 1 1 2 Lijun Xie , Huian Zhao , Peng Zhou , Tenggao Zhu , Yongzi Liu ISSN: 2378-9476 and Huanwen Chen1* Copyright 1Department of Chemistry, East China Institute of Technology, China © 2015 Chen et al. 2Jiangxi Institute of Forensic Science, Nanchang, China OPEN ACCESS Abstract Keywords • Ambient ionization Ambient mass spectrometry has emerged as a significant tool to facilitate forensic • Mass spectrometry investigation considering its well-known advantages of rapid, direct, nondestructive, • Forensic analysis high-throughput detection of a broad range of raw samples, as well as its potential capability of miniaturization and automation. New mass spectrometry technologies include more versatile ionization sources, allowing the next generation of instrumentation to be more multipurpose and adaptable to the needs of the discipline. This review assesses and highlights forensic applications of ambient mass spectrometry. In addition, the instrumentation and principles of some popular and promising ambient ionization techniques are summarized. INTRODUCTION procedures. Forensic science has been developed in the twentieth century maintaining sampleThese integritydrawbacks and maketraceability. it difficult to analyze and came to be recognized by the courts and law enforcement. forensic with high efficiency and effectively, leaving problems in Forensic analysis and investigation capabilities are vital in criminal and civil cases, national security, environmental allows for direct and rapid analysis of raw sample in their native Recently, ambient mass spectrometry (ambient MS), which illicit drugs and counterfeiting of legitimate pharmaceuticals, new in sample preparation, has aroused blooming interest. -
Mass Spectrometry Imaging, an Emerging Technology in Neuropsychopharmacology
Neuropsychopharmacology REVIEWS (2014) 39, 34–49 & 2014 American College of Neuropsychopharmacology. All rights reserved 0893-133X/14 ............................................................................................................................................................... REVIEW 34 www.neuropsychopharmacology.org Mass Spectrometry Imaging, an Emerging Technology in Neuropsychopharmacology Mohammadreza Shariatgorji1, Per Svenningsson2 and Per E Andre´ n*,1 1 Department of Pharmaceutical Biosciences, Biomolecular Imaging and Proteomics, National Laboratory for Mass Spectrometry Imaging, Uppsala University, Uppsala, Sweden; 2Department of Neurology and Clinical Neuroscience, Centre for Molecular Medicine, Karolinska Institutet and Karolinska University Hospital, Stockholm, Sweden Mass spectrometry imaging is a powerful tool for directly determining the distribution of proteins, peptides, lipids, neurotransmitters, metabolites and drugs in neural tissue sections in situ. Molecule-specific imaging can be achieved using various ionization techniques that are suited to different applications but which all yield data with high mass accuracies and spatial resolutions. The ability to simultaneously obtain images showing the distributions of chemical species ranging from metal ions to macromolecules makes it possible to explore the chemical organization of a sample and to correlate the results obtained with specific anatomical features. The imaging of biomolecules has provided new insights into multiple neurological diseases,