Vero Cell Upstream Bioprocess Development for the Production of Viral Vectors and Vaccines T ⁎ Sascha Kiesslich, Amine A
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Recombinant African Swine Fever Virus from a Field Isolate Using
Journal of Virological Methods 183 (2012) 86–89 Contents lists available at SciVerse ScienceDirect Journal of Virological Methods j ournal homepage: www.elsevier.com/locate/jviromet Short communication Novel approach for the generation of recombinant African swine fever virus from a field isolate using GFP expression and 5-bromo-2!-deoxyuridine selection a b a, Raquel Portugal , Carlos Martins , Günther M. Keil ∗ a Friedrich-Loeffler-Institut, Südufer 10, 17493 Greifswald-Insel Riems, Germany b Laboratório de Doenc¸ as Infecciosas, CIISA, Faculdade de Medicina Veterinária, Technical University of Lisbon, Lisbon, Portugal a b s t r a c t Article history: Generation of African swine fever virus (ASFV) recombinants has so far relied mainly on the manipulation Received 4 August 2011 of virus strains which had been adapted to growth in cell culture, since field isolates do not usually Received in revised form 14 March 2012 replicate efficiently in established cell lines. Using wild boar lung cells (WSL) which allow for propagation Accepted 21 March 2012 of ASFV field isolates, a novel approach for the generation of recombinant ASFV directly from field isolates Available online 4 April 2012 was developed which includes the integration into the viral thymidine kinase (TK) locus of an ASFV p72- promoter driven expression cassette for enhanced green fluorescent protein (EGFP) embedded in a 16 kbp Keywords: mini F-plasmid into the genome of the ASFV field strain NHV. This procedure enabled the monitoring of African swine fever virus recombinants recombinant virus replication by EGFP autofluorescence. Selection for the TK-negative (TK−) phenotype Field isolate of the recombinants on TK− Vero (VeroTK−) cells in the presence of 5-bromo-2!-deoxyuridine (BrdU) Green fluorescent protein + Thymidine kinase led to efficient isolation of recombinant virus due to the elimination of TK wild type virus by BrdU- BrdU selection phosporylation in infected VeroTK− cells. -
ICTV Code Assigned: 2011.001Ag Officers)
This form should be used for all taxonomic proposals. Please complete all those modules that are applicable (and then delete the unwanted sections). For guidance, see the notes written in blue and the separate document “Help with completing a taxonomic proposal” Please try to keep related proposals within a single document; you can copy the modules to create more than one genus within a new family, for example. MODULE 1: TITLE, AUTHORS, etc (to be completed by ICTV Code assigned: 2011.001aG officers) Short title: Change existing virus species names to non-Latinized binomials (e.g. 6 new species in the genus Zetavirus) Modules attached 1 2 3 4 5 (modules 1 and 9 are required) 6 7 8 9 Author(s) with e-mail address(es) of the proposer: Van Regenmortel Marc, [email protected] Burke Donald, [email protected] Calisher Charles, [email protected] Dietzgen Ralf, [email protected] Fauquet Claude, [email protected] Ghabrial Said, [email protected] Jahrling Peter, [email protected] Johnson Karl, [email protected] Holbrook Michael, [email protected] Horzinek Marian, [email protected] Keil Guenther, [email protected] Kuhn Jens, [email protected] Mahy Brian, [email protected] Martelli Giovanni, [email protected] Pringle Craig, [email protected] Rybicki Ed, [email protected] Skern Tim, [email protected] Tesh Robert, [email protected] Wahl-Jensen Victoria, [email protected] Walker Peter, [email protected] Weaver Scott, [email protected] List the ICTV study group(s) that have seen this proposal: A list of study groups and contacts is provided at http://www.ictvonline.org/subcommittees.asp . -
Validation and Annotation of Virus Sequence Submissions to Genbank Alejandro A
Schäffer et al. BMC Bioinformatics (2020) 21:211 https://doi.org/10.1186/s12859-020-3537-3 SOFTWARE Open Access VADR: validation and annotation of virus sequence submissions to GenBank Alejandro A. Schäffer1,2, Eneida L. Hatcher2, Linda Yankie2, Lara Shonkwiler2,3,J.RodneyBrister2, Ilene Karsch-Mizrachi2 and Eric P. Nawrocki2* *Correspondence: [email protected] Abstract 2National Center for Biotechnology Background: GenBank contains over 3 million viral sequences. The National Center Information, National Library of for Biotechnology Information (NCBI) previously made available a tool for validating Medicine, National Institutes of Health, Bethesda, MD, 20894 USA and annotating influenza virus sequences that is used to check submissions to Full list of author information is GenBank. Before this project, there was no analogous tool in use for non-influenza viral available at the end of the article sequence submissions. Results: We developed a system called VADR (Viral Annotation DefineR) that validates and annotates viral sequences in GenBank submissions. The annotation system is based on the analysis of the input nucleotide sequence using models built from curated RefSeqs. Hidden Markov models are used to classify sequences by determining the RefSeq they are most similar to, and feature annotation from the RefSeq is mapped based on a nucleotide alignment of the full sequence to a covariance model. Predicted proteins encoded by the sequence are validated with nucleotide-to-protein alignments using BLAST. The system identifies 43 types of “alerts” that (unlike the previous BLAST-based system) provide deterministic and rigorous feedback to researchers who submit sequences with unexpected characteristics. VADR has been integrated into GenBank’s submission processing pipeline allowing for viral submissions passing all tests to be accepted and annotated automatically, without the need for any human (GenBank indexer) intervention. -
Bats: Important Reservoir Hosts of Emerging Viruses
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Other Publications in Zoonotics and Wildlife Disease Wildlife Disease and Zoonotics 2006 Bats: Important Reservoir Hosts of Emerging Viruses Charles H. Calisher Colorado State University James E. Childs Yale University School of Medicine, [email protected] Hume E. Field Department of Primary Industries and Fisheries, Brisbane, Queensland Tony Schountz University of Northern Colorado Kathryn V. Holmes University of Colorado Health Sciences Center Follow this and additional works at: https://digitalcommons.unl.edu/zoonoticspub Part of the Veterinary Infectious Diseases Commons Calisher, Charles H.; Childs, James E.; Field, Hume E.; Schountz, Tony; and Holmes, Kathryn V., "Bats: Important Reservoir Hosts of Emerging Viruses" (2006). Other Publications in Zoonotics and Wildlife Disease. 60. https://digitalcommons.unl.edu/zoonoticspub/60 This Article is brought to you for free and open access by the Wildlife Disease and Zoonotics at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Other Publications in Zoonotics and Wildlife Disease by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. CLINICAL MICROBIOLOGY REVIEWS, July 2006, p. 531–545 Vol. 19, No. 3 0893-8512/06/$08.00ϩ0 doi:10.1128/CMR.00017-06 Copyright © 2006, American Society for Microbiology. All Rights Reserved. Bats: Important Reservoir Hosts of Emerging Viruses Charles H. Calisher,1* James E. Childs,2 Hume E. Field,3 Kathryn V. Holmes,4 -
Vero Cell Line Profile
Cell line profile Vero (ECACC catalogue no. 84113001) Cell line history The original Vero cell line was established from the kidney of an African green monkey in 1962 by Y. Yasumura and Y. Kawakita at the Chiba University in Japan1. It is currently one of the most used continuous cell lines in the world and has been cited in over 10,000 research publications. The cell line was originally described as derived from African green monkey of the genus Cercopithecus, confusingly used synonymously with the terms Grivet and Vervet monkey. This has been replaced with the genus Chlorocebus. The species designation of Vero is commonly cited as Chlorocebus aethiops. However, recent whole genome sequencing has re-designated the species as the closely related Chlorocebus sabaeus2. Key characteristics The Vero cell line is continuous and aneuploid. Continuous cell lines of mammalian origin have been an extremely valuable resource for the production of biological pharmaceuticals. Vero is susceptible to infection from a number of viruses such as SV-40, measles virus, arboviruses, rubella virus, polioviruses, influenza viruses and simian syncytial viruses3. It is also susceptible to bacterial toxins including diphtheria toxin and Shiga-like toxins. Interestingly, when the whole genome of Vero was sequenced it was found there was a 9-Mb deletion on chromosome 12, which resulted in the loss of the type 1 interferon gene cluster, in addition to the cyclin-dependent kinase inhibitor genes. The authors suggested this could be the reason for the continuous nature of the cell line and its susceptibility to a variety of pathogens2. Vero cells in the early stages (24 hours) of cell culture Applications Due to the continuous nature of the cell lines and its sensitivity to a number of different viruses, Vero has been used extensively in the fields of vaccine production and to study various types of emerging pathogens such as H5N1 influenza virus, middle-eastern respiratory syndrome (MERS) coronavirus, Zika virus and a number of haemorrhagic fever viruses. -
Virusscope – Inside a Virus Testing Lab
VirusSCOPE – Inside a virus testing lab Viruses are too small to be seen. There are different kinds of tests to find out whether someone has a virus in their body. These tests are carried out in specialized laboratories. One kind of test uses so-called antibodies. Antibodies are tiny recognition tools, which our body uses to recognize and fight viruses. Each antibody has a different shape, which makes it recognize a certain virus. In the lab, such antibodies are used to find and distinguish viruses in patients. Now, this is your task! Can you find out, which viruses are in your patients' bodies? Here’s what you’ll learn: In the lab, people find out which virus someone has by using antibodies. The shape of these antibodies matches perfectly with one specific virus. Antibodies have several parts. Material for print-out (4 pages): - Viruses (16 purple fields) - Antibodies (4 red and 4 blue parts with QR-Codes and letters) – cut these out! - Samples from 9 patients (green flasks with QR-Codes and numbers) - Laboratory report You can play this game on your own or in pairs. If you play this game in pairs, one person can find the matching parts, while the other documents your findings in the laboratory report. Alternatively, print out the materials twice and compete against each other to diagnose all patients correctly as quickly as possible! Note: The QR-Codes are not needed in this game. If you have access to a 3D-printer you can also 3D-print the parts of this game: https://www.prusaprinters.org/prints/28554-virusscope-educational-game-about-covid-19- diagnos 1st step: Assign antibodies to viruses Each antibody consists of two pieces, a „light chain“ (red) and a „heavy chain” (red). -
Emerging Issues in Virus Taxonomy Marc H.V
PERSPECTIVES Emerging Issues in Virus Taxonomy Marc H.V. van Regenmortel* and Brian W.J. Mahy† Viruses occupy a unique position in biology. Although are nonliving infectious entities that can be said, at best, to they possess some of the properties of living systems such lead a kind of borrowed life. as having a genome, they are actually nonliving infectious entities and should not be considered microorganisms. A Viruses versus Virus Particles or Virions clear distinction should be drawn between the terms virus, A virus is a general term which denotes any number of virion, and virus species. Species is the most fundamental taxonomic category used in all biological classification. In concrete objects that possess various relational properties 1991, the International Committee on Taxonomy of Viruses (for instance, its host, vector, and infectivity) that arise by (ICTV) decided that the category of virus species should be virtue of a relation with other objects. These relational used in virus classification together with the categories of properties, also called emergent properties, are characteris- genus and family. More than 50 ICTV study groups were tic of the viral biosystem as a whole and are not present in given the task of demarcating the 1,550 viral species that its constituent parts. When a virus undergoes its so-called were recognized in the 7th ICTV report, which was pub- life cycle, it takes on various forms and manifestations, for lished in 2000. We briefly describe the changes in virus instance, as a replicating nucleic acid in the host cell or classification that were introduced in that report. -
Adjuvant Activity of Vero Cell on Cellular and Humoral Immunity Responses Against E
Research iMedPub Journals Archives of Clinical Microbiology 2021 www.imedpub.com Vol.12 No.1:137 ISSN 1989-8436 Department of Microbiology, Razi Vaccine and Serum Research Institute, Shiraz Branch, Agricultue Razi Vaccine and Serum Research Institute, Shiraz Branch, Agriculture Research, Education and Extension Organization (AREEO), Shiraz, Iran Adjuvant Activity of Vero Cell on Cellular and Humoral Immunity Responses against E. coli O157:H7 Infections in Balb/c Mice Alborzi Research Center, Namazi Hospital, Shiraz, Iran 2 Department of Microbiology, Science and Research Branch, Islamic Azad University, Tehran, Iran Hajar Molaee1, Yahya Tahamtan1* and Nahid Haidari 2DepOrganizationartment of Microbio l(AREEO),ogy, Razi Vaccin Shiraz,e and Seru mIran Research Institute Shiraz Branch, Agricultural Research, Education and Extension 1Department of Microbiology, Razi Vaccine and Serum Research Institute, Shiraz Branch, Agriculture Research, Education and Extension Organization (AREEO), Shiraz, Iran Organization 2Department of Microbiology, Alborzi Research Center, Namazi Hospital, Shiraz, Iran 3 *Corresponding author: Yahya Tahamtan, Department of Microbiology, Razi Vaccine and Serum Research Institute Shiraz Branch, Agricultural Department of Microbiology, Jahrom Branch, Islamic Azad University, Jahrom, Iran Research, Education and Extension Organization (AREEO), Shiraz, Iran, E-mail: [email protected] Received date: December 18, 2020; Accepted date: January 01, 2021; Published date: January 08, 2021 Citation: Homayoon M, Tahamtan Y, Kargar M (2021) Adjuvant Activity of Vero Cell on Cellular and Humoral Immunity Responses against E. Coli O157:H7 Infections in Balb/c Mice. Arch Clin Microbiol Vol.12 No.1:137. Introduction Abstract Eenterovirulent Escherichia coli rank among the most common relevant agents of bacterial diarrhea in humans and Enterohemorrhagic Escherichia coli constitute an important several animal species. -
Characterization & Qualification of Cell Substrates & Other Biological
Guidance for Industry Characterization and Qualification of Cell Substrates and Other Biological Materials Used in the Production of Viral Vaccines for Infectious Disease Indications Additional copies of this guidance are available from the Office of Communication, Outreach and Development (OCOD) (HFM-40), 1401 Rockville Pike, Suite 200N, Rockville, MD 20852 1448, or by calling 1-800-835-4709 or 301-827-1800, or email [email protected], or from the Internet at http://www.fda.gov/BiologicsBloodVaccines/GuidanceComplianceRegulatoryInformation/Guida nces/default.htm. For questions on the content of this guidance, contact OCOD at the phone numbers listed above. U.S. Department of Health and Human Services Food and Drug Administration Center for Biologics Evaluation and Research [February 2010] Contains Nonbinding Recommendations TABLE OF CONTENTS I. INTRODUCTION.........................................................................................................................................1 II. DEFINITION.................................................................................................................................................2 III. CHARACTERIZATION AND QUALIFICATION OF CELL SUBSTRATES, VIRAL SEEDS, BIOLOGICAL RAW MATERIALS AND VACCINE INTERMEDIATES ...........................................2 A. PRODUCT-SPECIFIC PARAMETERS INFLUENCING CHARACTERIZATION AND QUALIFICATION OF CELL SUBSTRATES ...........................................................................................3 1. Vaccine Purity ............................................................................................................................................3 -
S41598-020-77835-Z.Pdf
www.nature.com/scientificreports OPEN Specifc capture and whole‑genome phylogeography of Dolphin morbillivirus Francesco Cerutti1, Federica Giorda1,2, Carla Grattarola1, Walter Mignone1, Chiara Beltramo1, Nicolas Keck3, Alessio Lorusso4, Gabriella Di Francesco4, Ludovica Di Renzo4, Giovanni Di Guardo5, Mariella Goria1, Loretta Masoero1, Pier Luigi Acutis1, Cristina Casalone1 & Simone Peletto1* Dolphin morbillivirus (DMV) is considered an emerging threat having caused several epidemics worldwide. Only few DMV genomes are publicly available. Here, we report the use of target enrichment directly from cetacean tissues to obtain novel DMV genome sequences, with sequence comparison and phylodynamic analysis. RNA from 15 tissue samples of cetaceans stranded along the Italian and French coasts (2008–2017) was purifed and processed using custom probes (by bait hybridization) for target enrichment and sequenced on Illumina MiSeq. Data were mapped against the reference genome, and the novel sequences were aligned to the available genome sequences. The alignment was then used for phylogenetic and phylogeographic analysis using MrBayes and BEAST. We herein report that target enrichment by specifc capture may be a successful strategy for whole‑genome sequencing of DMV directly from feld samples. By this strategy, 14 complete and one partially complete genomes were obtained, with reads mapping to the virus up to 98% and coverage up to 7800X. The phylogenetic tree well discriminated the Mediterranean and the NE‑Atlantic strains, circulating in the Mediterranean Sea and causing two diferent epidemics (2008–2015 and 2014–2017, respectively), with a limited time overlap of the two strains, sharing a common ancestor approximately in 1998. Cetacean morbillivirus (CeMV) is a member of the genus Morbillivirus (family Paramyxoviridae, subfamily Orthoparamyxovirinae), which includes also the Canine morbillivirus, Feline morbillivirus, Measles morbillivi- rus, Phocine morbillivirus, Rinderpest morbillivirus, and Small ruminant morbillivirus 1. -
Toxoplasma Gondii Antigens: Recovery Analysis of Tachyzoites Cultivated in Vero Cell Maintained in Serum Free Medium
View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Experimental Parasitology 130 (2012) 463–469 Contents lists available at SciVerse ScienceDirect Experimental Parasitology journal homepage: www.elsevier.com/locate/yexpr Toxoplasma gondii antigens: Recovery analysis of tachyzoites cultivated in Vero cell maintained in serum free medium Thaís Alves da Costa-Silva a, Cristina da Silva Meira a, Neuza Frazzatti-Gallina b, ⇑ Vera Lucia Pereira-Chioccola a, a Laboratorio de Parasitologia do Instituto Adolfo Lutz, São Paulo, SP, Brazil b Instituto Butantan, Seção de Raiva, São Paulo, SP, Brazil article info abstract Article history: Vero cells have been used successfully in Toxoplasma gondii maintenance. Medium supplementation for Received 7 June 2011 culture cells with fetal bovine serum is necessary for cellular growth. However, serum in these cultures Received in revised form 24 October 2011 presents disadvantages, such as the potential to induce hypersensitivity, variability of serum batches, Accepted 10 January 2012 possible presence of contaminants, and the high cost of good quality serum. Culture media formulated Available online 24 January 2012 without any animal derived components, designed for serum-free growth of cell lines have been used successfully for different virus replication. The advantages of protozoan parasite growth in cell line cul- Keywords: tures using serum-free medium remain poorly studied. Thus, this study was designed to determine Toxoplasma gondii whether T. gondii tachyzoites grown in Vero cell cultures in serum-free medium, after many passages, Vero cells Serum-free medium are able to maintain the same antigenic proprieties as those maintained in experimental mice. -
Prevalence of Herpes -, Measles Morbillivirus-, Parvovirus
Prevalence of herpes -, measles morbillivirus-, parvovirus B19 - and rubella viruses immunoglobulin G among women with chronic hepatitis B of reproductive age in Denmark A cross-sectional study Bergløv, Anne; Hallager, Sofie; Panum, Inge; Weis, Nina Published in: International Journal of Infectious Diseases DOI: 10.1016/j.ijid.2020.09.1477 Publication date: 2020 Document version Publisher's PDF, also known as Version of record Document license: CC BY-NC-ND Citation for published version (APA): Bergløv, A., Hallager, S., Panum, I., & Weis, N. (2020). Prevalence of herpes -, measles morbillivirus-, parvovirus B19 - and rubella viruses immunoglobulin G among women with chronic hepatitis B of reproductive age in Denmark: A cross-sectional study. International Journal of Infectious Diseases, 101, 269-275. https://doi.org/10.1016/j.ijid.2020.09.1477 Download date: 01. Oct. 2021 International Journal of Infectious Diseases 101 (2020) 269–275 Contents lists available at ScienceDirect International Journal of Infectious Diseases journal homepage: www.elsevier.com/locate/ijid Prevalence of herpes -, measles morbillivirus-, parvovirus B19 - and rubella viruses immunoglobulin G among women with chronic hepatitis B of reproductive age in Denmark: A cross-sectional study a a b a,c, Anne Bergløv , Sofie Hallager , Inge Panum , Nina Weis * a Department of Infectious Diseases, Copenhagen University Hospital Hvidovre, Kettegaard Alle 30, DK 2650 Hvidovre, Denmark b Department of Clinical Microbiology, Copenhagen University Hospital Hvidovre, Kettegaard