Recombinant African Swine Fever Virus from a Field Isolate Using

Total Page:16

File Type:pdf, Size:1020Kb

Recombinant African Swine Fever Virus from a Field Isolate Using Journal of Virological Methods 183 (2012) 86–89 Contents lists available at SciVerse ScienceDirect Journal of Virological Methods j ournal homepage: www.elsevier.com/locate/jviromet Short communication Novel approach for the generation of recombinant African swine fever virus from a field isolate using GFP expression and 5-bromo-2!-deoxyuridine selection a b a, Raquel Portugal , Carlos Martins , Günther M. Keil ∗ a Friedrich-Loeffler-Institut, Südufer 10, 17493 Greifswald-Insel Riems, Germany b Laboratório de Doenc¸ as Infecciosas, CIISA, Faculdade de Medicina Veterinária, Technical University of Lisbon, Lisbon, Portugal a b s t r a c t Article history: Generation of African swine fever virus (ASFV) recombinants has so far relied mainly on the manipulation Received 4 August 2011 of virus strains which had been adapted to growth in cell culture, since field isolates do not usually Received in revised form 14 March 2012 replicate efficiently in established cell lines. Using wild boar lung cells (WSL) which allow for propagation Accepted 21 March 2012 of ASFV field isolates, a novel approach for the generation of recombinant ASFV directly from field isolates Available online 4 April 2012 was developed which includes the integration into the viral thymidine kinase (TK) locus of an ASFV p72- promoter driven expression cassette for enhanced green fluorescent protein (EGFP) embedded in a 16 kbp Keywords: mini F-plasmid into the genome of the ASFV field strain NHV. This procedure enabled the monitoring of African swine fever virus recombinants recombinant virus replication by EGFP autofluorescence. Selection for the TK-negative (TK−) phenotype Field isolate of the recombinants on TK− Vero (VeroTK−) cells in the presence of 5-bromo-2!-deoxyuridine (BrdU) Green fluorescent protein + Thymidine kinase led to efficient isolation of recombinant virus due to the elimination of TK wild type virus by BrdU- BrdU selection phosporylation in infected VeroTK− cells. The recombinant NHV-dTK-GFP produced titres of both cell- associated and secreted viral progeny in WSL cells similar to parental NHV indicating that insertion of large heterologous sequences into the viral TK locus and EGFP expression do not impair viral replication in these cells. In summary, a novel method has been developed for generation of ASFV recombinants directly from field isolates, providing an efficacious method for further manipulations of wild-type virus genomes. © 2012 Elsevier B.V. All rights reserved. African swine fever virus (ASFV), or as proposed recently African remain largely unknown which underlines the need to develop swine fever asfivirus (Van Regenmortel et al., 2010) is classified as strategies to facilitate the study and manipulation of this complex the sole member of the family Asfarviridae, genus Asfivirus (Dixon virus. et al., 2005). The size of the double stranded DNA genome varies Generation of ASFV recombinants has relied mainly on the between 170 and 190 kbp, depending on the virus isolate. The mutagenesis of cell-culture adapted viruses since field isolates – African swine fever virus (ASFV) infects all members of the Suidae with the exception of COS-1 cells (Hurtado et al., 2010) – do not family. In domestic pigs and wild boars it causes African swine fever grow well in cultured cells. On the other hand, working with pri- (ASF), a highly contagious hemorrhagic disease with high mortality mary swine macrophages, the natural host cells of ASFV, has proven rates for which no efficacious vaccine is available (for review see to be difficult. In this report the use of a new cell line derived from Tulman et al., 2009). Therefore it constitutes a major threat for pig wild boar lung cells (WSL, provided by the Collection of Cell Lines husbandry worldwide, highlighted particularly by the recent intro- in Veterinary Medicine, FLI Insel Riems, Germany) is described, duction of ASFV into Caucasian countries (Rowlands et al., 2008; which is suitable for efficient propagation of several ASFV field Costard et al., 2009; Rahimi et al., 2010) and its ongoing spread in isolates (unpublished results), in a novel approach for generation the affected area. of recombinant ASFV directly from the field isolate NHV, a non- The ASFV genome contains approximately 150 open read- fatal, non-haemadsorbing ASFV strain, isolated from a pig infected ing frames (ORFs) coding for proteins with functions at both chronically (Vigário et al., 1974) which provided the basis for a use- the cellular and the viral replication and morphogenesis levels ful and reliable infection model for studies on the mechanisms of (Yánez˜ et al., 1995) which account for the high complexity of the protective immunity (Leitao et al., 2001). To this end, heterologous virus-host interactions. Pathogenesis and virulence determinants sequences encompassing the gene for enhanced green fluorescent protein (EGFP) were integrated into the thymidine kinase (TK) locus of NHV Cells infected with the TK-negative, EGFP-positive recom- binant virus could be detected easily by fluorescence microscopy. ∗ Corresponding author. Tel.: +49 38351 71272; fax: +49 38351 71151. E-mail address: Guenther.Keil@fli.bund.de (G.M. Keil). Subsequently, viral mutants were selected positively on a 0166-0934/$ – see front matter © 2012 Elsevier B.V. All rights reserved. http://dx.doi.org/10.1016/j.jviromet.2012.03.030 R. Portugal et al. / Journal of Virological Methods 183 (2012) 86–89 87 TK-negative Vero cell line using BrdU to eliminate TK-positive wild type virus. For generation of recombinant ASFV, a transfer plasmid con- taining the EGFP ORF under transcriptional control of the promoter from the gene encoding vp72 (López-Otín et al., 1990), the major viral structural protein, and flanked by segments of the viral TK gene, was constructed (Fig. 1). The resulting plasmid pASFV-dTK- EGFP-BAC-Lox had been designed initially for cloning of the ASFV genome as a bacterial artificial chromosome. It contains the viral TK-spanning locus from nt 43,995 to nt 50,739 with the same 316 bp deletion within the TK ORF as described by Moore et al. (1998). The TK ORF flanking sequences are both about 3 kbp in size to provide longer sequence segments for homologous recombination as used in previous constructs to target the same genomic region (Moore et al., 1998). To generate recombinants, 4 ␮g of plasmid pASFV-dTK-EGFP- BAC-Lox were transfected into semi-confluent WSL cells in 6-well 6 plates (approximately 10 cells per well) using the FuGene HD transfection reagent as recommended by the supplier (Roche, Mannheim, Germany). The medium was removed 5 h after trans- fection and the cells were infected with NHV at an MOI of 2. The inoculum was removed 1 h after adsorption. Cells were washed with culture medium and incubated further in fresh medium for 3 days, when autofluorescing foci of rounded and granulated cells indicated productive replication of recombinant virus. Infected cells from these foci were collected by aspiration and re-inoculated onto WSL cells after one 70 C freeze/thaw cycle. Cells from aut- − ◦ ofluorescing foci were harvested as mentioned above and used for infection of bromodeoxyuridine (BrdU)-resistant Vero (VeroTK−) cells in presence of 50 ␮g/ml BrdU for positive selection of recom- binants. VeroTK− cells were selected using a strategy employed by Bello et al. (1987) for MDBK cells and Kit et al. (1966) for HeLa cells and kindly provided by Roland Riebe, FLI, Insel Riems, Germany. Appearance of autofluorescent cells was monitored daily. At 7 dpi cultures were harvested and after 2 freeze/thaw cycles aliquots of Fig. 1. Construction of recombination plasmid pASFV-dTK-EGFP-BAC Lox. (A) the virus/cell suspension were again added to Vero TK− cells and Schematic representation of the ASFV genome region containing the TK ORF. incubated in the presence of 50 ␮g/ml BrdU. Nucleotide numbers are given in kilobases (kb), names and direction of transcrip- tion of contained ORFs are indicated. The location of the TK-ORF (K196R) is shown in Fluorescent foci which consisted of only a few cells and thus bold. (B) Plasmid constructions. The left (TK-L) and right (TK-R) segments of the ASFV were considerably smaller than foci in WSL cell cultures, were col- TK gene and respective flanking sequences were amplified by PCR from infected lected and passaged again on Vero TK cells in medium containing − macrophages DNA. Primers used were TK-L+ (GTG GGC GTA TAG ATA AGG ATA TC) 50 ␮g/ml BrdU. After two further rounds of positive selection, GFP- and TK-L (TAA GGT ACC GTG TTT TAA TAG TTT TGT CTC GGG TG) amplifying a − 3207 bp fragment from nt 43,995 to nt 47,201 (TK-L), and primers TK-R+ (TGA CCC expressing infected cells were freeze/thawed twice and used for GGG CGT AAG AAC GCA GAC AAG ACG C) and TK-R (CCT GCT CGT GTT ACT TAT the infection of WSL cells to obtain high titre stocks of recombi- − GAA AC) amplifying a 3236 bp fragment from nt 47,504 to nt 50,739 (TK-R). All nant virus. Large fluorescent foci readily developed and finally led nucleotide numbers are from GenBank accession # U18466.1. Both amplicons were to the isolation of the ASFV recombinant NHV-dTK-GFP. To test sequentially cloned into plasmid vector pSP73 (Promega) using established standard for homogeneity of the recombinant virus preparation, WSL cul- procedures. TK-L and TK-R were blunt ended with Klenow polymerase. TK-L was then cleaved with Acc65I and inserted into pSP73 cleaved with Acc65I and EcoRV. tures on coverslips were inoculated with approximately 100 PFU. TK-R was cleaved with SmaI, and cloned into the TK-L containing plasmid after cleav- At 4 days p.i., cells were fixed and stained for detection of ASFV age with SmaI to yield pspASFV-dTK, containing the viral TK-spanning locus from nt infected cells by indirect immunofluorescence using mouse mon- 43,995 to nt 50,739 with a 304 bp deletion from 47,202 to 47,503.
Recommended publications
  • Vero Cell Line Profile
    Cell line profile Vero (ECACC catalogue no. 84113001) Cell line history The original Vero cell line was established from the kidney of an African green monkey in 1962 by Y. Yasumura and Y. Kawakita at the Chiba University in Japan1. It is currently one of the most used continuous cell lines in the world and has been cited in over 10,000 research publications. The cell line was originally described as derived from African green monkey of the genus Cercopithecus, confusingly used synonymously with the terms Grivet and Vervet monkey. This has been replaced with the genus Chlorocebus. The species designation of Vero is commonly cited as Chlorocebus aethiops. However, recent whole genome sequencing has re-designated the species as the closely related Chlorocebus sabaeus2. Key characteristics The Vero cell line is continuous and aneuploid. Continuous cell lines of mammalian origin have been an extremely valuable resource for the production of biological pharmaceuticals. Vero is susceptible to infection from a number of viruses such as SV-40, measles virus, arboviruses, rubella virus, polioviruses, influenza viruses and simian syncytial viruses3. It is also susceptible to bacterial toxins including diphtheria toxin and Shiga-like toxins. Interestingly, when the whole genome of Vero was sequenced it was found there was a 9-Mb deletion on chromosome 12, which resulted in the loss of the type 1 interferon gene cluster, in addition to the cyclin-dependent kinase inhibitor genes. The authors suggested this could be the reason for the continuous nature of the cell line and its susceptibility to a variety of pathogens2. Vero cells in the early stages (24 hours) of cell culture Applications Due to the continuous nature of the cell lines and its sensitivity to a number of different viruses, Vero has been used extensively in the fields of vaccine production and to study various types of emerging pathogens such as H5N1 influenza virus, middle-eastern respiratory syndrome (MERS) coronavirus, Zika virus and a number of haemorrhagic fever viruses.
    [Show full text]
  • Vero Cell Upstream Bioprocess Development for the Production of Viral Vectors and Vaccines T ⁎ Sascha Kiesslich, Amine A
    Biotechnology Advances 44 (2020) 107608 Contents lists available at ScienceDirect Biotechnology Advances journal homepage: www.elsevier.com/locate/biotechadv Research review paper Vero cell upstream bioprocess development for the production of viral vectors and vaccines T ⁎ Sascha Kiesslich, Amine A. Kamen Department of Bioengineering, McGill University, 817 Sherbrooke Street West, Montreal, Quebec H3A 0C3, Canada ARTICLE INFO ABSTRACT Keywords: The Vero cell line is considered the most used continuous cell line for the production of viral vectors and Vero vaccines. Historically, it is the first cell line that was approved by the WHO for the production of human vac- Cell culture cines. Comprehensive experimental data on the production of many viruses using the Vero cell line can be found Process development in the literature. However, the vast majority of these processes is relying on the microcarrier technology. While Virus production this system is established for the large-scale manufacturing of viral vaccine, it is still quite complex and labor Optimization intensive. Moreover, scale-up remains difficult and is limited by the surface area given by the carriers. To Vaccines ffi Bioreactor overcome these and other drawbacks and to establish more e cient manufacturing processes, it is a priority to Microcarrier further develop the Vero cell platform by applying novel bioprocess technologies. Especially in times like the Suspension culture current COVID-19 pandemic, advanced and scalable platform technologies could provide more efficient and cost-effective solutions to meet the global vaccine demand. Herein, we review the prevailing literature on Vero cell bioprocess development for the production of viral vectors and vaccines with the aim to assess the recent advances in bioprocess development.
    [Show full text]
  • Adjuvant Activity of Vero Cell on Cellular and Humoral Immunity Responses Against E
    Research iMedPub Journals Archives of Clinical Microbiology 2021 www.imedpub.com Vol.12 No.1:137 ISSN 1989-8436 Department of Microbiology, Razi Vaccine and Serum Research Institute, Shiraz Branch, Agricultue Razi Vaccine and Serum Research Institute, Shiraz Branch, Agriculture Research, Education and Extension Organization (AREEO), Shiraz, Iran Adjuvant Activity of Vero Cell on Cellular and Humoral Immunity Responses against E. coli O157:H7 Infections in Balb/c Mice Alborzi Research Center, Namazi Hospital, Shiraz, Iran 2 Department of Microbiology, Science and Research Branch, Islamic Azad University, Tehran, Iran Hajar Molaee1, Yahya Tahamtan1* and Nahid Haidari 2DepOrganizationartment of Microbio l(AREEO),ogy, Razi Vaccin Shiraz,e and Seru mIran Research Institute Shiraz Branch, Agricultural Research, Education and Extension 1Department of Microbiology, Razi Vaccine and Serum Research Institute, Shiraz Branch, Agriculture Research, Education and Extension Organization (AREEO), Shiraz, Iran Organization 2Department of Microbiology, Alborzi Research Center, Namazi Hospital, Shiraz, Iran 3 *Corresponding author: Yahya Tahamtan, Department of Microbiology, Razi Vaccine and Serum Research Institute Shiraz Branch, Agricultural Department of Microbiology, Jahrom Branch, Islamic Azad University, Jahrom, Iran Research, Education and Extension Organization (AREEO), Shiraz, Iran, E-mail: [email protected] Received date: December 18, 2020; Accepted date: January 01, 2021; Published date: January 08, 2021 Citation: Homayoon M, Tahamtan Y, Kargar M (2021) Adjuvant Activity of Vero Cell on Cellular and Humoral Immunity Responses against E. Coli O157:H7 Infections in Balb/c Mice. Arch Clin Microbiol Vol.12 No.1:137. Introduction Abstract Eenterovirulent Escherichia coli rank among the most common relevant agents of bacterial diarrhea in humans and Enterohemorrhagic Escherichia coli constitute an important several animal species.
    [Show full text]
  • Characterization & Qualification of Cell Substrates & Other Biological
    Guidance for Industry Characterization and Qualification of Cell Substrates and Other Biological Materials Used in the Production of Viral Vaccines for Infectious Disease Indications Additional copies of this guidance are available from the Office of Communication, Outreach and Development (OCOD) (HFM-40), 1401 Rockville Pike, Suite 200N, Rockville, MD 20852­ 1448, or by calling 1-800-835-4709 or 301-827-1800, or email [email protected], or from the Internet at http://www.fda.gov/BiologicsBloodVaccines/GuidanceComplianceRegulatoryInformation/Guida nces/default.htm. For questions on the content of this guidance, contact OCOD at the phone numbers listed above. U.S. Department of Health and Human Services Food and Drug Administration Center for Biologics Evaluation and Research [February 2010] Contains Nonbinding Recommendations TABLE OF CONTENTS I. INTRODUCTION.........................................................................................................................................1 II. DEFINITION.................................................................................................................................................2 III. CHARACTERIZATION AND QUALIFICATION OF CELL SUBSTRATES, VIRAL SEEDS, BIOLOGICAL RAW MATERIALS AND VACCINE INTERMEDIATES ...........................................2 A. PRODUCT-SPECIFIC PARAMETERS INFLUENCING CHARACTERIZATION AND QUALIFICATION OF CELL SUBSTRATES ...........................................................................................3 1. Vaccine Purity ............................................................................................................................................3
    [Show full text]
  • Toxoplasma Gondii Antigens: Recovery Analysis of Tachyzoites Cultivated in Vero Cell Maintained in Serum Free Medium
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector Experimental Parasitology 130 (2012) 463–469 Contents lists available at SciVerse ScienceDirect Experimental Parasitology journal homepage: www.elsevier.com/locate/yexpr Toxoplasma gondii antigens: Recovery analysis of tachyzoites cultivated in Vero cell maintained in serum free medium Thaís Alves da Costa-Silva a, Cristina da Silva Meira a, Neuza Frazzatti-Gallina b, ⇑ Vera Lucia Pereira-Chioccola a, a Laboratorio de Parasitologia do Instituto Adolfo Lutz, São Paulo, SP, Brazil b Instituto Butantan, Seção de Raiva, São Paulo, SP, Brazil article info abstract Article history: Vero cells have been used successfully in Toxoplasma gondii maintenance. Medium supplementation for Received 7 June 2011 culture cells with fetal bovine serum is necessary for cellular growth. However, serum in these cultures Received in revised form 24 October 2011 presents disadvantages, such as the potential to induce hypersensitivity, variability of serum batches, Accepted 10 January 2012 possible presence of contaminants, and the high cost of good quality serum. Culture media formulated Available online 24 January 2012 without any animal derived components, designed for serum-free growth of cell lines have been used successfully for different virus replication. The advantages of protozoan parasite growth in cell line cul- Keywords: tures using serum-free medium remain poorly studied. Thus, this study was designed to determine Toxoplasma gondii whether T. gondii tachyzoites grown in Vero cell cultures in serum-free medium, after many passages, Vero cells Serum-free medium are able to maintain the same antigenic proprieties as those maintained in experimental mice.
    [Show full text]
  • Data, Reagents, Assays and Merits of Proteomics for SARS-Cov-2 Research and Testing
    RESEARCH Data, Reagents, Assays and Merits of Proteomics for SARS-CoV-2 Research and Testing Authors Jana Zecha, Chien-Yun Lee, Florian P. Bayer, Chen Meng, Vincent Grass, Johannes Zerweck, Karsten Schnatbaum, Thomas Michler, Andreas Pichlmair, Christina Ludwig, and Bernhard Kuster Correspondence Graphical Abstract [email protected]; [email protected] In Brief Downloaded from As the COVID-19 pandemic continues to spread, research on SARS-CoV-2 is also rapidly evolving and the number of associated manuscripts on pre- https://www.mcponline.org print servers is soaring. To facilitate proteomic research, Zecha et al. present protein expression profiles of four model cell lines and investigate the response of Vero E6 cells to viral infection. Further, they at TU MÜNCHEN on January 11, 2021 evaluate the feasibility of pro- teomic analysis for SARS-CoV- 2 diagnostics and critically dis- cuss the merits of proteomic approaches in the context of the COVID-19 research. Highlights In-depth proteomes of 4 SARS-CoV-2 cell line models (Vero E6, Calu-3, Caco-2, A549). Proteomic evidence for thousands of Chlorocebus sabaeus proteins. Proteomic response of Vero E6 cells to SARS-CoV-2 infection. Synthetic peptides, spectral libraries, and targeted assays for SARS-CoV-2 proteins. Zecha et al., 2020, Mol Cell Proteomics 19(9), 1503–1522 September 2020 © 2020 Zecha et al. Published by The American Society for Biochemistry and Molecular Biology, Inc. https://doi.org/10.1074/mcp.RA120.002164 RESEARCH Author’s Choice Data, Reagents, Assays and Merits of Proteomics for SARS-CoV-2 Research and Testing Jana Zecha1,‡ , Chien-Yun Lee1,‡ , Florian P.
    [Show full text]
  • Novel Endogenous Simian Retroviral Integrations in Vero Cells
    www.nature.com/scientificreports OPEN Novel endogenous simian retroviral integrations in Vero cells: implications for quality control of a Received: 6 June 2017 Accepted: 14 December 2017 human vaccine cell substrate Published: xx xx xxxx Chisato Sakuma1, Tsuyoshi Sekizuka2, Makoto Kuroda2, Fumio Kasai3, Kyoko Saito1, Masaki Ikeda4, Toshiyuki Yamaji1, Naoki Osada4 & Kentaro Hanada 1 African green monkey (AGM)-derived Vero cells have been utilized to produce various human vaccines. The Vero cell genome harbors a variety of simian endogenous type D retrovirus (SERV) sequences. In this study, a transcriptome analysis showed that DNA hypomethylation released the epigenetic repression of SERVs in Vero cells. Moreover, comparative genomic analysis of three Vero cell sublines and an AGM reference revealed that the genomes of the sublines have ~80 SERV integrations. Among them, ~60 integrations are present within all three cell sublines and absent from the reference sequence. At least several of these integrations consist of complete SERV proviruses. These results strongly suggest that SERVs integrated in the genome of Vero cells did not retrotranspose after the establishment of the cell lineage as far as cells were maintained under standard culture and passage conditions, providing a scientifc basis for controlling the quality of pharmaceutical cell substrates and their derived biologics. Te Vero cell lineage, a permanent cell line established from the kidney tissue of an African green monkey (AGM)1,2, is susceptible to various types of viruses3 as well as several bacterial toxins including Shiga-like toxins (or “Vero” toxins)4. Vero cells have pseudo-diploid karyotypes5,6, and are non-tumorigenic unless they are exten- sively passaged7–10.
    [Show full text]
  • Cell Culture and Animal Infection with Distinct Trypanosoma Cruzi Strains Expressing Red and Green fluorescent Proteins
    Available online at www.sciencedirect.com International Journal for Parasitology 38 (2008) 289–297 www.elsevier.com/locate/ijpara Cell culture and animal infection with distinct Trypanosoma cruzi strains expressing red and green fluorescent proteins S.F. Pires a, W.D. DaRocha a, J.M. Freitas a, L.A. Oliveira b, G.T. Kitten b, C.R. Machado a, S.D.J. Pena a, E. Chiari c, A.M. Macedo a, S.M.R. Teixeira a,* a Departamento de Bioquı´mica e Imunologia, Instituto de Cieˆncias Biolo´gicas – UFMG, Universidade Federal de Minas Gerais, Av. Antonio Carlos 6627, 31270-901 Belo Horizonte, MG, Brazil b Departamento de Morfologia, Universidade Federal de Minas Gerais, Brazil c Departamento de Parasitologia, Universidade Federal de Minas Gerais, Brazil Received 22 June 2007; received in revised form 7 August 2007; accepted 14 August 2007 Abstract Different strains of Trypanosoma cruzi were transfected with an expression vector that allows the integration of green fluorescent pro- tein (GFP) and red fluorescent protein (RFP) genes into the b-tubulin locus by homologous recombination. The sites of integration of the GFP and RFP markers were determined by pulse-field gel electrophoresis and Southern blot analyses. Cloned cell lines selected from transfected epimastigote populations maintained high levels of fluorescent protein expression even after 6 months of in vitro culture of epimastigotes in the absence of drug selection. Fluorescent trypomastigotes and amastigotes were observed within Vero cells in culture as well as in hearts and diaphragms of infected mice. The infectivity of the GFP- and RFP-expressing parasites in tissue culture cells was comparable to wild type populations.
    [Show full text]
  • Haplotype-Resolved De Novo Assembly of the Vero Cell Line Genome
    www.nature.com/npjvaccines ARTICLE OPEN Haplotype-resolved de novo assembly of the Vero cell line genome ✉ Marie-Angélique Sène 1, Sascha Kiesslich 1, Haig Djambazian 2, Jiannis Ragoussis 2, Yu Xia 1 and Amine A. Kamen 1 The Vero cell line is the most used continuous cell line for viral vaccine manufacturing with more than 40 years of accumulated experience in the vaccine industry. Additionally, the Vero cell line has shown a high affinity for infection by MERS-CoV, SARS-CoV, and recently SARS-CoV-2, emerging as an important discovery and screening tool to support the global research and development efforts in this COVID-19 pandemic. However, the lack of a reference genome for the Vero cell line has limited our understanding of host–virus interactions underlying such affinity of the Vero cell towards key emerging pathogens, and more importantly our ability to redesign high-yield vaccine production processes using Vero genome editing. In this paper, we present an annotated highly contiguous 2.9 Gb assembly of the Vero cell genome. In addition, several viral genome insertions, including Adeno-associated virus serotypes 3, 4, 7, and 8, have been identified, giving valuable insights into quality control considerations for cell-based vaccine production systems. Variant calling revealed that, in addition to interferon, chemokines, and caspases-related genes lost their functions. Surprisingly, the ACE2 gene, which was previously identified as the host cell entry receptor for SARS-CoV and SARS-CoV-2, also lost function in the Vero genome due to structural variations. npj Vaccines (2021) 6:106 ; https://doi.org/10.1038/s41541-021-00358-9 1234567890():,; INTRODUCTION RESULTS Originated from a female Chlorocebus sabaeus (African Green De novo assembly of the Vero genome and annotation Monkey) kidney, the Vero cell line represents the most widely Using sequencing reads with a mean coverage per base pair of used continuous cell line for the production of viral vaccines with 100.2 (Fig.
    [Show full text]
  • Evaluation of the Role of Shiga and Shiga-Like Toxins in Mediating Direct Damage to Human Vascular Endothelial Cells
    University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln Uniformed Services University of the Health Sciences U.S. Department of Defense 1991 Evaluation of the Role of Shiga and Shiga-like Toxins in Mediating Direct Damage to Human Vascular Endothelial Cells Vernon L. Tesh Uniformed Services University of the Health Sciences James E. Samuel Biocarb, Inc. Liyanage P. Perera Uniformed Services University of the Health Sciences John B. Sharefkin Uniformed Services University of the Health Sciences Alison D. O'Brien Uniformed Services University of the Health Sciences, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/usuhs Part of the Medicine and Health Sciences Commons Tesh, Vernon L.; Samuel, James E.; Perera, Liyanage P.; Sharefkin, John B.; and O'Brien, Alison D., "Evaluation of the Role of Shiga and Shiga-like Toxins in Mediating Direct Damage to Human Vascular Endothelial Cells" (1991). Uniformed Services University of the Health Sciences. 113. https://digitalcommons.unl.edu/usuhs/113 This Article is brought to you for free and open access by the U.S. Department of Defense at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Uniformed Services University of the Health Sciences by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. 344 Evaluationof the Role of Shiga and Shiga-like Toxins in Mediating Direct Damage to Human Vascular Endothelial Cells Vernon L. Tesh, James E. Samuel,* Liyanage P. Perera, Departmentsof Microbiologyand Surgery, UniformedServices University John B. Sharefkin, and Alison D. O'Brien of the Health Sciences, Bethesda, Maryland Infectionwith Shiga toxin- andShiga-like toxin-producing strains of Shigelladysenteriae and Escherichiacolif respectively,can progressto the hemolytic-uremicsyndrome.
    [Show full text]
  • Development of a Vero Cell Platform for Rvsv Vector Production
    Development of a Vero cell platform for rVSV vector production Sascha Kiesslich Department of Bioengineering McGill University, Montreal March 2021 A thesis submitted to McGill University in partial fulfillment of the requirements of the degree of Doctor of Philosophy © Sascha Kiesslich 2021 Abstract Abstract Viral vector-based vaccines are receiving increased attention, especially in light of the recent Ebola virus epidemic in West Africa and the COVID-19 pandemic. Their cell culture- based manufacturing, however, is lengthy and cumbersome, mostly using conventional production technologies. This work aims at contributing to the field of vaccine bioprocess engineering by further developing a cell culture platform to establish more efficient, scalable and cost-effective manufacturing technologies. The main subject is the Vero cell line. We highlight its significance in the context of viral vaccine production by reviewing the prevailing literature on Vero cell bioprocess development. As a result, our analysis leads to a call for further research activities in this field to study and establish advanced technologies. Applied to the recombinant vesicular stomatitis virus (rVSV) vaccine platform, and in particular the Ebola virus disease vaccine rVSV-ZEBOV, we study bioreactors for adherent Vero cell processes. Based on small-scale optimization studies, we develop microcarrier and fixed-bed bioreactors for serum-free rVSV-ZEBOV production. Further, using newly developed analytical assay techniques, we compare critical process and product characteristics, such as yield of infectious particles, cell specific productivities as well as ratio of total to infectious particles, and determine the optimal time of harvest. Even though microcarrier and fixed-bed bioreactors are considered superior with regard to scalability when compared to the current rVSV-ZEBOV process employing roller bottles, suspension cell cultures are favored even more.
    [Show full text]
  • Poliovirus-Nonsusceptible Vero Cell Line for the World Health Organization Global Action Plan
    bioRxiv preprint doi: https://doi.org/10.1101/2020.08.19.257204; this version posted August 19, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Poliovirus-nonsusceptible Vero cell line for the World Health Organization global 2 action plan 3 4 Yuko Okemoto-Nakamura 1*, Kenji Someya 2*, Toshiyuki Yamaji 1, Kyoko Saito 1, Makoto Takeda 2, 5 and Kentaro Hanada 1 6 7 1 Department of Biochemistry and Cell Biology, National Institute of Infectious Diseases, 1-23-1 Toyama, 8 Shinjuku-ku, Tokyo, 162-9640, Japan 9 2 Department of Virology 3, National Institute of Infectious Diseases, 4-7-1, Gakuen, Musashimurayama, 10 Tokyo, 208-0011, Japan 11 *, Y.O.-N. and K.S. equally contributed to this work. 12 13 Address correspondence to Kentaro Hanada (Tel: +81-3-5285-1158; e-mail: [email protected] or 14 [email protected]) 15 16 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.08.19.257204; this version posted August 19, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 17 Abstract 18 Polio or poliomyelitis is a disabling and life-threatening disease caused by poliovirus (PV). 19 As a consequence of global polio vaccination efforts, wild PV serotype 2 has been 20 eradicated, and wild PV serotypes 1- and 3-transmitted cases have been largely eliminated 21 except for in limited regions around the world.
    [Show full text]