Detection of Avian Encephalomyelitis Virus in Broiler Chickens in Iran Using RT-PCR and Histopathological Methods
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1 Review on Avian Encephalomyelitis
Review on avian encephalomyelitis Tsehaye Neges1 and Haftey Sahle2 1DVM, Area Sales Manager (ASM) at Ethiochicken, Tigray, Ethiopia 2DVM, field Practitioner at Tanqua abergele, Tigray, Ethiopia [email protected] Abstract: Summary: This paper is mainly aimed to review the avian encephalomyelitis. Avian Encephalomyelitis (AE) is an economic concern to poultry industry as it causes economic loss by declining egg production in laying hens as well as egg hatchability . This disease is very common in commercial aviculture which is caused by genus Tremovirus, family of Picornavirridae. It is essentially an enteric infection which can be acquired horizontally between birds by oral ingestion and vertically from infected breeding females through the egg to progeny. It affects mainly young chicken and it is characterized by neurological signs like ataxia and rapid tremors of the head and neck giving rise to the former name of ‘‘Epidemic Tremor ” but no gross lesions are seen in the brain of birds. Both morbidity and mortality can be 50% sometimes reach up to 60% and Its Vertical infection followed by horizontal infection causes a characteristic biphasic mortality pattern. Protection against this virus can be successfully achieved by using the appropriate vaccine strains. Vaccinated birds are life time immune and recovered do not spread the virus. Wild birds are not considered as reservoir of the virus which poses no threat to the human and this disease is not considered as zoonotic disease. Therefore it can be concluded that AE is economically important viral disease which can hinders the poultry production, so it is recommended to control the disease by proper vaccination of parent stock. -
Identification and Genome Characterization of the First Sicinivirus Isolate from Chickens in Mainland China by Using Viral Metagenomics
RESEARCH ARTICLE Identification and Genome Characterization of the First Sicinivirus Isolate from Chickens in Mainland China by Using Viral Metagenomics Hongzhuan Zhou1, Shanshan Zhu1, Rong Quan1, Jing Wang1, Li Wei1, Bing Yang1, Fuzhou Xu1, Jinluo Wang1, Fuyong Chen2, Jue Liu1* 1 Beijing Key Laboratory for Prevention and Control of Infectious Diseases in Livestock and Poultry, Institute of Animal Husbandry and Veterinary Medicine, Beijing Academy of Agriculture and Forestry Sciences, No. 9 Shuguang Garden Middle Road, Haidian District, Beijing, 100097, People’s Republic of China, 2 College of a11111 Veterinary Medicine, China Agricultural University, No. 2 Yuanmingyuan West Road, Haidian District, Beijing, 100197, People’s Republic of China * [email protected] Abstract OPEN ACCESS Unlike traditional virus isolation and sequencing approaches, sequence-independent ampli- Citation: Zhou H, Zhu S, Quan R, Wang J, Wei L, Yang B, et al. (2015) Identification and Genome fication based viral metagenomics technique allows one to discover unexpected or novel Characterization of the First Sicinivirus Isolate from viruses efficiently while bypassing culturing step. Here we report the discovery of the first Chickens in Mainland China by Using Viral Sicinivirus isolate (designated as strain JSY) of picornaviruses from commercial layer chick- Metagenomics. PLoS ONE 10(10): e0139668. ens in mainland China by using a viral metagenomics technique. This Sicinivirus isolate, doi:10.1371/journal.pone.0139668 which contains a whole genome of 9,797 nucleotides (nt) excluding the poly(A) tail, pos- Editor: Luis Menéndez-Arias, Centro de Biología sesses one of the largest picornavirus genome so far reported, but only shares 88.83% and Molecular Severo Ochoa (CSIC-UAM), SPAIN 82.78% of amino acid sequence identity to that of ChPV1 100C (KF979332) and Sicinivirus Received: March 26, 2015 1 strain UCC001 (NC_023861), respectively. -
Virus Metagenomics in Farm Animals: a Systematic Review
viruses Review Virus Metagenomics in Farm Animals: A Systematic Review Kirsty T. T. Kwok , David F. Nieuwenhuijse , My V. T. Phan and Marion P. G. Koopmans * Department of Viroscience, Erasmus MC, 3015 Rotterdam, The Netherlands; [email protected] (K.T.T.K.); [email protected] (D.F.N.); [email protected] (M.V.T.P.) * Correspondence: [email protected] Received: 21 December 2019; Accepted: 14 January 2020; Published: 16 January 2020 Abstract: A majority of emerging infectious diseases are of zoonotic origin. Metagenomic Next-Generation Sequencing (mNGS) has been employed to identify uncommon and novel infectious etiologies and characterize virus diversity in human, animal, and environmental samples. Here, we systematically reviewed studies that performed viral mNGS in common livestock (cattle, small ruminants, poultry, and pigs). We identified 2481 records and 120 records were ultimately included after a first and second screening. Pigs were the most frequently studied livestock and the virus diversity found in samples from poultry was the highest. Known animal viruses, zoonotic viruses, and novel viruses were reported in available literature, demonstrating the capacity of mNGS to identify both known and novel viruses. However, the coverage of metagenomic studies was patchy, with few data on the virome of small ruminants and respiratory virome of studied livestock. Essential metadata such as age of livestock and farm types were rarely mentioned in available literature, and only 10.8% of the datasets were publicly available. Developing a deeper understanding of livestock virome is crucial for detection of potential zoonotic and animal pathogens and One Health preparedness. -
APP203705 Staff Assessment Report.Pdf
EPA advice for application APP203705 Staff Assessment Report February 2019 APP203705: To determine the new organism status of: Tremovirus A (Avian encephalomyelitis virus) Chicken anaemia virus (CAV or CIAV) Fowlpox virus Gallid alphaherpesvirus 2 (Marek’s disease serotype 1 virus) Gallid alphaherpesvirus 2 (Marek’s disease serotype 2 virus) Maleagrid alphaherpesvirus 1 (Marek’s disease serotype 3 virus) Eimeria acervulina, E. brunetti, E. necatrix, E. tenella and E. maxima Purpose To determine if various live poultry organisms in vaccines are new organisms under section 26 of the HSNO Act Application number APP203705 Application type Statutory determination Applicant Pacificvet Limited Date formally received 23 January 2019 1 Executive Summary and Recommendation Application APP203705, submitted by Pacificvet Limited, seeks a determination on the new organism status of: Tremovirus A (Avian encephalomyelitis virus) Chicken anaemia virus (CAV or CIAV) Fowlpox virus Gallid alphaherpesvirus 2 (Marek’s disease serotype 1 virus) Gallid alphaherpesvirus 2 (Marek’s disease serotype 2 virus) Maleagrid alphaherpesvirus 1 (Marek’s disease serotype 3 virus) Eimeria acervulina Eimeria brunetti Eimeria necatrix Eimeria tenella Eimeria maxima After reviewing all of the available information and completing a literature search concerning the organisms, EPA staff recommend that Tremovirus A (Avian encephalomyelitis virus), Chicken anaemia virus (CAV or CIAV), Fowlpox virus, Gallid alphaherpesvirus 2 (Marek’s disease serotype 1 virus), Gallid alphaherpesvirus 2 (Marek’s disease serotype 2 virus), Maleagrid alphaherpesvirus 1 (Marek’s disease serotype 3 virus), Eimeria acervulina, E. brunetti, E. necatrix, E. tenella and E. maxima are not new organisms for the purpose of the HSNO Act based on evidence that these organisms have been identified and present in New Zealand since before 29 July 1998 when the HSNO Act came into effect. -
Limited Overlap in RNA Virome Composition Among Rabbits and Their
bioRxiv preprint doi: https://doi.org/10.1101/812081; this version posted October 21, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Limited overlap in RNA virome composition among rabbits and their 2 ectoparasites reveals barriers to virus transmission 3 4 5 6 Jackie E. Mahar1,2, Mang Shi1, Robyn N. Hall2,3, Tanja Strive2,3, Edward C. Holmes1 7 8 9 10 1Marie Bashir Institute for Infectious Disease and Biosecurity, Charles Perkins Centre, 11 School of Life and Environmental Sciences and Sydney Medical School, The University of 12 Sydney, Sydney, NSW 2006, Australia. 13 2Commonwealth Scientific and Industrial Research Organisation, Health and Biosecurity, 14 Black Mountain, ACT 2601, Australia. 15 3Centre for Invasive Species Solutions, University of Canberra, Bruce, ACT 2601, Australia. 16 17 Running title: Comparison of rabbit and ectoparasite viromes 18 19 Corresponding author: 20 Edward C. Holmes, 21 Marie Bashir Institute for Infectious Disease and Biosecurity, Charles Perkins Centre, 22 School of Life and Environmental Sciences and Sydney Medical School, 23 The University of Sydney, Sydney, NSW 2006, Australia. 24 Email: [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/812081; this version posted October 21, 2019. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
Picornavirus Entry: Membrane Permeability Induced by Capsid Protein VP4
Picornavirus entry: membrane permeability induced by capsid protein VP4 Anusha Panjwani Submitted in accordance with the requirements for the degree of Doctor of Philosophy The University of Leeds School of Molecular and Cellular Biology September, 2013 1 The candidate confirms that the work submitted is her own and that appropriate credit has been given where reference has been made to the work of others. This copy has been supplied on the understanding that it is copyright material and that no quotation from the thesis may be published without proper acknowledgement. The right of Anusha Panjwani to be identified as Author of this work has been asserted by her in accordance with the Copyright, Designs and Patents Act 1988. © 2013 The University of Leeds and Anusha Panjwani 2 Acknowledgements First and foremost I’d like to thank my supervisor Toby Tuthill for all his support, advice, encouragement and patience throughout the course of my PhD. Thank you for being there to answer my never-ending questions, being my sounding board for ideas, for your confidence in me and always seeing the positive side to things! I would like to thank my University of Leeds supervisor, Nic Stonehouse for her encouragement and support through the course of my PhD. Terry Jackson for his input and pertinent advice through my PhD will be remembered. Professor Dave Rowlands for great project and career advice, meals and walks, that made the journey that much more interesting. Thanks to all members of the Picornavirus structure group and everyone at Pirbright, in particular Joseph, Kyle, Lisa, Lidia, Beatrice for giving me so many fond memories and helping me maintain my sanity especially towards the end of my PhD! Thank you to Josie for being an amazing friend and housemate. -
Host Age Shapes Virome Abundance and Diversity in Birds
bioRxiv preprint doi: https://doi.org/10.1101/2020.08.23.263103; this version posted August 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 1 Host age shapes virome abundance and diversity in birds 2 3 Running Title: Host age impacts avian viromes 4 5 6 Michelle Wille1,#, Mang Shi1, Aeron C. Hurt2, Marcel Klaassen3, Edward C. Holmes1,# 7 8 9 1Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and Environmental 10 Sciences and School of Medical Sciences, The University of Sydney, Sydney, New South Wales, 11 Australia. 12 2Melbourne School of Population and Global Health, University of Melbourne, Melbourne, 13 Australia. 14 3Centre for Integrative Ecology, Deakin University, Geelong, Victoria, Australia. 15 16 17 #Corresponding authors: 18 Michelle Wille [email protected] 19 Edward C. Holmes [email protected] 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.08.23.263103; this version posted August 23, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC-ND 4.0 International license. 20 Abstract 21 Host age influences the ecology of many microorganisms. This is evident in one-host – one virus 22 systems, such as influenza A virus in Mallards, but also in community studies of parasites and 23 microbiomes. -
Abstracts of the 2016 International Poultry Scientific Forum Georgia World Congress Center, Atlanta, Georgia January 25–26, 2016
Abstracts of the 2016 International Poultry Scientific Forum Georgia World Congress Center, Atlanta, Georgia January 25–26, 2016 SYMPOSIA AND ORAL SESSIONS Monday, January 25, 2016 Abstract Page No. No. Milton Y Dendy Keynote Address . 194 Physiology . ..M1–M10 . 195 Processing & Products . .M11–M27 . 198 Pathology . .M28–M41 . 203 SCAD I . .M42–M53 . 206 Metabolism & Nutrition I . M54–M69. 210 Metabolism & Nutrition II . M70–M80. 214 Environment Management I . M81–M95 . 217 Environment Management II . M96–M106 . 222 Metabolism & Nutrition III . M107–M121 . 225 Metabolism & Nutrition IV . .M122–M132 . 230 Tuesday, January 26, 2016 Metabolism & Nutrition V . T133–T145 . 233 SCAD II . .T146–T151 . 237 SCAD III . T152–T157 . 239 Metabolism & Nutrition VI . ..T158–T171 . 240 Environment & Management III . T172–T184 . 244 Metabolism & Nutrition VII . T185–T196 . 248 POSTER PRESENTATIONS . P197–P365 . 253 IPSF Author Index . 299 ABSTRACTS 2016 International Poultry Scientific Forum Georgia World Congress Center, Atlanta, Georgia January 25-26, 2016 Milton Y Dendy Keynote Address B-313 Antibiotic Usage in Poultry: Assessing the Effects on Antibiotic Resistance and Human Health Randall Singer, University of Minnesota, St. Paul, Minnesota, USA Bacterial infections in humans that are resistant to antibiotics pose a significant and growing public health challenge globally. Agricultural antibiotic use (AAU) can influence resistance in specific bacterial populations, and it is now well-documented that non-antibiotic compounds such as disinfectants -
Proceedings of the 60Th WPDC Is a 5-Year Compilation, Containing Proceedings from the 56Th Through the 60Th WPDC
PROCEEDINGS OF THE SIXTIETH WESTERN POULTRY DISEASE CONFERENCE March 20-23, 2011 Sacramento, CA ©2011 Western Poultry Disease Conference ii SPECIAL ACKNOWLEDGMENTS The 60th Western Poultry Disease Conference (WPDC) is honored to acknowledge the many contributions and support to the Conference. The financial contributions provide support for outstanding presentations and to help pay for some of the costs of the Conference, thus helping us to maintain a relatively low registration fee for an international conference. More than 40 organizations, companies and individuals have once again given substantial financial support. Many companies and organizations, including some that also contribute financially, send speakers at no expense to the Conference. We thank all these people, and acknowledge their support and contribution. The WPDC is extremely honored to give a special acknowledgement to Pfizer Poultry Health who contributed at the Super Sponsors level by sponsoring our electronic proceedings. In addition, WPDC is pleased to acknowledge our Benefactor contributors, American Association of Avian Pathologists, Inc., Intervet/ Schering- Plough Animal Health and Merial Inc. Once again, the WPDC is forever grateful to our distinguished Patrons, Donors, Sustaining Members, and Friends of the Conference who are just as important in making the conference a success. All our contributors and supporters are listed on the following pages. We greatly appreciate their generosity and sincerely thank them and their representatives for supporting the WPDC. Dr. Larry Allen, Program Chair for the 60th WPDC, would especially like to thank all those who submitted titles for their contributions to the success of this year’s conference. Without their substantial efforts the Conference could never come to fruition. -
PROCEEDINGS of the SIXTY-FOURTH WESTERN POULTRY DISEASE CONFERENCE March 22-25, 2015 Sacramento, CA
PROCEEDINGS OF THE SIXTY-FOURTH WESTERN POULTRY DISEASE CONFERENCE March 22-25, 2015 Sacramento, CA PROCEEDINGS OF THE SIXTY-FOURTH WESTERN POULTRY DISEASE CONFERENCE March 22-25, 2015 Sacramento, CA ©2015 Western Poultry Disease Conference 64TH WESTERN POULTRY DISEASE CONFERENCE DEDICATION BRUCE R. CHARLTON (1952 – 2014) Bruce was born and raised in Loup City, NE. He joined the US Army soon after high school. Following his honorable service, he received a BS from the University of Maryland, College Park, MD, followed by a MS from Colorado State University, Fort Collins, CO, both in microbiology. Subsequently, Bruce received his DVM from Colorado State University in 1984. After a year in private practice in Nebraska, he headed west and accepted a position as a Veterinary Medical Officer in the Sacramento lab of the Veterinary Laboratory Services, California Department of Food and Agriculture. When the School of Veterinary Medicine at the University of California, Davis, assumed responsibility for the State’s laboratory system, Bruce transferred to the California Animal Health and Food Safety Laboratory System (CAHFS) Turlock lab. At the time of his death, Bruce was a Professor of Clinical Diagnostic Microbiology and Branch Laboratory Chief at the CAHFS-Turlock lab. He was a diplomate of both the American College of Poultry Veterinarians and the American College of Veterinary Microbiologists. He served on the Board of Directors of the American Association of Avian Pathologists (AAAP). Bruce was one of the first persons to characterize Ornithobacterium rhinotracheale. In addition, he developed molecular tests for the diagnosis of mycoplasma and salmonella. For these and other numerous accomplishments, Bruce was presented with the Poultry Scientist of the Year award by the Pacific Egg and Poultry Association in 2007. -
Four Novel Picornaviruses Detected in Magellanic Penguins
bioRxiv preprint doi: https://doi.org/10.1101/2020.10.26.356485; this version posted October 28, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. It is made available under aCC-BY-NC 4.0 International license. 1 Four novel Picornaviruses detected in Magellanic Penguins (Spheniscus magellanicus) in 2 Chile 3 4 Running title: Novel picornaviruses in Magellanic Penguins 5 6 Juliette Hayer1, Michelle Wille2, Alejandro Font3, Marcelo González-Aravena3, Helene Norder4,5, 7 Maja Malmberg1,6 8 9 10 11 1 - Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences, 12 Uppsala, Sweden; 13 2 - Marie Bashir Institute for Infectious Diseases and Biosecurity, School of Life and 14 Environmental Sciences and School of Medical Sciences, The University of Sydney, Sydney, 15 Australia 16 3 - Instituto Antártico Chileno, Plaza Muñoz Gamero 1055, Punta Arenas, Chile; 17 4- Department of Infectious Diseases/Virology, Institute of Biomedicine, Sahlgrenska Academy, 18 University of Gothenburg, Sweden 19 5- Region Västra Götaland, Sahlgrenska University Hospital, Department of Clinical Microbiology, 20 Gothenburg, Sweden 21 6 - Department of Biomedical Sciences and Veterinary Public Health, Swedish University of 22 Agricultural Sciences, Uppsala, Sweden 23 24 Co-corresponding authors: Juliette Hayer [email protected] ; Maja Malmberg 25 [email protected] 26 27 Word count (abstract): 219 28 Word count (text): 4377 29 1 bioRxiv preprint doi: https://doi.org/10.1101/2020.10.26.356485; this version posted October 28, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder, who has granted bioRxiv a license to display the preprint in perpetuity. -
WO 2016/201224 Al 15 December 2016 (15.12.2016) P O P C T
(12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date WO 2016/201224 Al 15 December 2016 (15.12.2016) P O P C T (51) International Patent Classification: (81) Designated States (unless otherwise indicated, for every C12N 7/00 (2006.01) kind of national protection available): AE, AG, AL, AM, AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, (21) International Application Number: BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DK, DM, PCT/US20 16/036888 DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, (22) International Filing Date: HN, HR, HU, ID, IL, IN, IR, IS, JP, KE, KG, KN, KP, KR, 10 June 2016 (10.06.2016) KZ, LA, LC, LK, LR, LS, LU, LY, MA, MD, ME, MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, OM, (25) Filing Language: English PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, SC, (26) Publication Language: English SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW. (30) Priority Data: 62/173,777 10 June 2015 (10.06.2015) US (84) Designated States (unless otherwise indicated, for every kind of regional protection available): ARIPO (BW, GH, (71) Applicant: THE UNITED STATES OF AMERICA, as GM, KE, LR, LS, MW, MZ, NA, RW, SD, SL, ST, SZ, represented by THE SECRETARY, DEPARTMENT TZ, UG, ZM, ZW), Eurasian (AM, AZ, BY, KG, KZ, RU, OF HEALTH AND HUMAN SERVICES [US/US]; N a TJ, TM), European (AL, AT, BE, BG, CH, CY, CZ, DE, tional Institutes of Health, Office of Technology Transfer, DK, EE, ES, FI, FR, GB, GR, HR, HU, IE, IS, IT, LT, LU, 601 1 Executive Boulevard, Suite 325, MSC 7660, Beth- LV, MC, MK, MT, NL, NO, PL, PT, RO, RS, SE, SI, SK, esda, MD 20852-7660 (US).