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1 Review on Avian Encephalomyelitis
Review on avian encephalomyelitis Tsehaye Neges1 and Haftey Sahle2 1DVM, Area Sales Manager (ASM) at Ethiochicken, Tigray, Ethiopia 2DVM, field Practitioner at Tanqua abergele, Tigray, Ethiopia [email protected] Abstract: Summary: This paper is mainly aimed to review the avian encephalomyelitis. Avian Encephalomyelitis (AE) is an economic concern to poultry industry as it causes economic loss by declining egg production in laying hens as well as egg hatchability . This disease is very common in commercial aviculture which is caused by genus Tremovirus, family of Picornavirridae. It is essentially an enteric infection which can be acquired horizontally between birds by oral ingestion and vertically from infected breeding females through the egg to progeny. It affects mainly young chicken and it is characterized by neurological signs like ataxia and rapid tremors of the head and neck giving rise to the former name of ‘‘Epidemic Tremor ” but no gross lesions are seen in the brain of birds. Both morbidity and mortality can be 50% sometimes reach up to 60% and Its Vertical infection followed by horizontal infection causes a characteristic biphasic mortality pattern. Protection against this virus can be successfully achieved by using the appropriate vaccine strains. Vaccinated birds are life time immune and recovered do not spread the virus. Wild birds are not considered as reservoir of the virus which poses no threat to the human and this disease is not considered as zoonotic disease. Therefore it can be concluded that AE is economically important viral disease which can hinders the poultry production, so it is recommended to control the disease by proper vaccination of parent stock. -
Phylogeny of Coccidia and Coevolution with Their Hosts
School of Doctoral Studies in Biological Sciences Faculty of Science Phylogeny of coccidia and coevolution with their hosts Ph.D. Thesis MVDr. Jana Supervisor: prof. RNDr. Václav Hypša, CSc. 12 This thesis should be cited as: Kvičerová J, 2012: Phylogeny of coccidia and coevolution with their hosts. Ph.D. Thesis Series, No. 3. University of South Bohemia, Faculty of Science, School of Doctoral Studies in Biological Sciences, České Budějovice, Czech Republic, 155 pp. Annotation The relationship among morphology, host specificity, geography and phylogeny has been one of the long-standing and frequently discussed issues in the field of parasitology. Since the morphological descriptions of parasites are often brief and incomplete and the degree of host specificity may be influenced by numerous factors, such analyses are methodologically difficult and require modern molecular methods. The presented study addresses several questions related to evolutionary relationships within a large and important group of apicomplexan parasites, coccidia, particularly Eimeria and Isospora species from various groups of small mammal hosts. At a population level, the pattern of intraspecific structure, genetic variability and genealogy in the populations of Eimeria spp. infecting field mice of the genus Apodemus is investigated with respect to host specificity and geographic distribution. Declaration [in Czech] Prohlašuji, že svoji disertační práci jsem vypracovala samostatně pouze s použitím pramenů a literatury uvedených v seznamu citované literatury. Prohlašuji, že v souladu s § 47b zákona č. 111/1998 Sb. v platném znění souhlasím se zveřejněním své disertační práce, a to v úpravě vzniklé vypuštěním vyznačených částí archivovaných Přírodovědeckou fakultou elektronickou cestou ve veřejně přístupné části databáze STAG provozované Jihočeskou univerzitou v Českých Budějovicích na jejích internetových stránkách, a to se zachováním mého autorského práva k odevzdanému textu této kvalifikační práce. -
Identification and Genome Characterization of the First Sicinivirus Isolate from Chickens in Mainland China by Using Viral Metagenomics
RESEARCH ARTICLE Identification and Genome Characterization of the First Sicinivirus Isolate from Chickens in Mainland China by Using Viral Metagenomics Hongzhuan Zhou1, Shanshan Zhu1, Rong Quan1, Jing Wang1, Li Wei1, Bing Yang1, Fuzhou Xu1, Jinluo Wang1, Fuyong Chen2, Jue Liu1* 1 Beijing Key Laboratory for Prevention and Control of Infectious Diseases in Livestock and Poultry, Institute of Animal Husbandry and Veterinary Medicine, Beijing Academy of Agriculture and Forestry Sciences, No. 9 Shuguang Garden Middle Road, Haidian District, Beijing, 100097, People’s Republic of China, 2 College of a11111 Veterinary Medicine, China Agricultural University, No. 2 Yuanmingyuan West Road, Haidian District, Beijing, 100197, People’s Republic of China * [email protected] Abstract OPEN ACCESS Unlike traditional virus isolation and sequencing approaches, sequence-independent ampli- Citation: Zhou H, Zhu S, Quan R, Wang J, Wei L, Yang B, et al. (2015) Identification and Genome fication based viral metagenomics technique allows one to discover unexpected or novel Characterization of the First Sicinivirus Isolate from viruses efficiently while bypassing culturing step. Here we report the discovery of the first Chickens in Mainland China by Using Viral Sicinivirus isolate (designated as strain JSY) of picornaviruses from commercial layer chick- Metagenomics. PLoS ONE 10(10): e0139668. ens in mainland China by using a viral metagenomics technique. This Sicinivirus isolate, doi:10.1371/journal.pone.0139668 which contains a whole genome of 9,797 nucleotides (nt) excluding the poly(A) tail, pos- Editor: Luis Menéndez-Arias, Centro de Biología sesses one of the largest picornavirus genome so far reported, but only shares 88.83% and Molecular Severo Ochoa (CSIC-UAM), SPAIN 82.78% of amino acid sequence identity to that of ChPV1 100C (KF979332) and Sicinivirus Received: March 26, 2015 1 strain UCC001 (NC_023861), respectively. -
Redalyc.Studies on Coccidian Oocysts (Apicomplexa: Eucoccidiorida)
Revista Brasileira de Parasitologia Veterinária ISSN: 0103-846X [email protected] Colégio Brasileiro de Parasitologia Veterinária Brasil Pereira Berto, Bruno; McIntosh, Douglas; Gomes Lopes, Carlos Wilson Studies on coccidian oocysts (Apicomplexa: Eucoccidiorida) Revista Brasileira de Parasitologia Veterinária, vol. 23, núm. 1, enero-marzo, 2014, pp. 1- 15 Colégio Brasileiro de Parasitologia Veterinária Jaboticabal, Brasil Available in: http://www.redalyc.org/articulo.oa?id=397841491001 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Review Article Braz. J. Vet. Parasitol., Jaboticabal, v. 23, n. 1, p. 1-15, Jan-Mar 2014 ISSN 0103-846X (Print) / ISSN 1984-2961 (Electronic) Studies on coccidian oocysts (Apicomplexa: Eucoccidiorida) Estudos sobre oocistos de coccídios (Apicomplexa: Eucoccidiorida) Bruno Pereira Berto1*; Douglas McIntosh2; Carlos Wilson Gomes Lopes2 1Departamento de Biologia Animal, Instituto de Biologia, Universidade Federal Rural do Rio de Janeiro – UFRRJ, Seropédica, RJ, Brasil 2Departamento de Parasitologia Animal, Instituto de Veterinária, Universidade Federal Rural do Rio de Janeiro – UFRRJ, Seropédica, RJ, Brasil Received January 27, 2014 Accepted March 10, 2014 Abstract The oocysts of the coccidia are robust structures, frequently isolated from the feces or urine of their hosts, which provide resistance to mechanical damage and allow the parasites to survive and remain infective for prolonged periods. The diagnosis of coccidiosis, species description and systematics, are all dependent upon characterization of the oocyst. Therefore, this review aimed to the provide a critical overview of the methodologies, advantages and limitations of the currently available morphological, morphometrical and molecular biology based approaches that may be utilized for characterization of these important structures. -
IMMUNE RESPONSE of BROILER CHICKENS to CAECAL COCCIDIOSIS USING EXO and ENDOGENOUS STAGES of Eimeria Tenella
IMMUNE RESPONSE OF BROILER CHICKENS TO CAECAL COCCIDIOSIS USING EXO AND ENDOGENOUS STAGES OF Eimeria tenella BY PAUL DAVOU KAZE DEPARTMENT OF VETERINARY PARASITOLOGY AND ENTOMOLOGY, FACULTY OF VETERINARY MEDICINE, AHMADU BELLO UNIVERSITY, ZARIA JANUARY, 2017 IMMUNE RESPONSE OF BROILER CHICKENS TO CAECAL COCCIDIOSIS USING EXO AND ENDOGENOUS STAGES OF Eimeria tenella BY Paul Davou KAZE B. Sc Hons (ABU) 1994; M.Sc, (UNIJOS) 2006 PhD/VET- MED /04981/2009-2010 A THESIS SUBMITTED TO THE SCHOOL OF POSTGRADUATE STUDIES AHMADU BELLO UNIVERSITY ZARIA, IN PARTIAL FULFILLMENT FOR THE AWARD OF DOCTOR OF PHILOSOPHY IN VETERINARY PARASITOLOGY DEPARTMENT OF VETERINARY PARASITOLOGY AND ENTOMOLOGY, AHMADU BELLO UNIVERSITY, ZARIA ,NIGERIA JANUARY, 2017 i DECLARATION I declare that the work in this Thesis entitled “Immune Response of Broiler Chickens to Caecal Coccidiosis Using Exo and Endogenous Stages of Eimeria tenella” has been performed by me in the Department of Veterinary Parasitology and Entomology. The information derived from literature has been duly acknowledged in the text and a list of references provided. No part of this Thesis was previously presented for another degree or diploma at this or any other Institution. Paul Davou KAZE ________________________ ____________ Signature Date ii CERTIFICATION This Thesis entitled “IMMUNE RESPONSE OF BROILER CHICKENS TO CAECAL COCCIDIOSIS USING EXO AND ENDOGENOUS STAGES OF EIMERIA TENELLA” by Paul Davou, KAZE meets the regulations governing the award of the degree of Doctor of Philosophy of Ahmadu Bello University, Zaria, and is approved for its contribution to knowledge and literary presentation. Prof. I. A. Lawal ___________________ ____________ Chairman, Supervisory Committee Signature Date Prof. -
Detection of Avian Encephalomyelitis Virus in Broiler Chickens in Iran Using RT-PCR and Histopathological Methods
Iranian Journal of Virology 2019;13(2): 24-28 ©2019, Iranian Society of Virology Original Article Detection of Avian Encephalomyelitis Virus in Broiler Chickens in Iran Using RT-PCR and Histopathological Methods Ghorani M1, Ghalyanchi Langeroudi A2*, Akramian A3, Hosseini H4, Rohani F5 1. Pathobiology Department, Faculty of Veterinary Medicine, University of Tabriz, Tabriz, Iran. 2. Microbiology and Immunology Department, Faculty of Veterinary Medicine, University of Tehran, Tehran, Iran. 3. Veterinary Laboratory, Kashan, Iran. 4. Clinical Sciences Department, Faculty of Veterinary Medicine, Islamic Azad University, Karaj Branch, Karaj, Iran. 5. Isfahan Veterinary Office, Isfahan, Iran. Abstract Introduction: Avian encephalomyelitis is caused by a Tremovirus and primarily affects chickens. The virus can infect young chicks and cause nervous symptoms. Vaccines are used to control the disease in breeders. Recently, the occurrence of the disease is causing concern in the poultry industry. Materials and Methods: In the present study, we report a case of avian encephalomyelitis in one broiler farm in Kashan (center of Iran). The chickens showed nervous symptoms like depression, head trembling, ataxia, dull eyes, as well as drowsiness, lack of coordination, and unsteady gait in chickens. In this study, we detected avian encephalomyelitis with the molecular procedure like reverse transcriptase-polymerase chain reaction (RT-PCR). Also, the histopathological diagnosis was made. Results: The disease was confirmed based on the clinical, molecular and histopathological findings. Conclusions: Due to the increase in vaccine prices and the difficulties of vaccine providing in the breeders’ farms, the probability of disease has increased. Stringently monitoring of breeders farms before the beginning of egg production and using a suitable protocol with vaccination is recommended. -
The Maintenance and Replication of the Apicoplast Genome In
THE MAINTENANCE AND REPLICATION OF THE APICOPLAST GENOME IN TOXOPLASMA GONDII by SARAH BAKER REIFF (Under the Direction of Boris Striepen) ABSTRACT The phylum Apicomplexa comprises a group of intracellular parasites of significant global health and economic concern. Most apicomplexan parasites possess a relict plastid organelle, which no longer performs photosynthesis but still retains important metabolic functions. This organelle, known as the apicoplast, also contains its own genome which is required for parasite viability. The apicoplast and its genome have been shown to be useful as therapeutic targets. However, limited information is available about the replication and maintenance of plastid DNA, not just in apicomplexan parasites but also in plants and algae. Here we use the genetic tools available in the model apicomplexan Toxoplasma gondii to examine putative apicoplast DNA replication and condensation factors, including homologs of DNA polymerase I, single-stranded DNA binding protein, DNA gyrase, and the histone-like protein HU. We confirm targeting to the apicoplast of these candidates, which are all encoded in the nucleus and must be imported. We created a genetic knockout of the Toxoplasma HU gene, which encodes a homolog of a bacterial protein that helps condense the bacterial nucleoid. We show that loss of HU in Toxoplasma results in a strong decrease in apicoplast DNA content, accompanied by biogenesis and segregation defects of the organelle. We were also interested in examining the roles of enzymes that might be more directly involved in DNA replication. To this end we constructed conditional mutants of the Toxoplasma gyrase B homolog and the DNA polymerase I homolog, which appears to be the result of a gene fusion and contains multiple different catalytic domains. -
Phylogeny, Morphology, and Metabolic and Invasive Capabilities
Protist, Vol. 166, 659–676, December 2015 http://www.elsevier.de/protis Published online date 30 September 2015 ORIGINAL PAPER Phylogeny, Morphology, and Metabolic and Invasive Capabilities of Epicellular Fish Coccidium Goussia janae a b b,c,d Sunil Kumar Dogga , Pavla Bartosová-Sojkovᡠ, Julius Lukesˇ , and a,1 Dominique Soldati-Favre a Department of Microbiology and Molecular Medicine, University of Geneva. CMU, 1 Rue Michel-Servet, CH-1211 Geneva 4, Switzerland b ˇ Institute of Parasitology, Biology Centre, Branisovskᡠ31, Ceské Budejoviceˇ (Budweis), Czech Republic c Faculty of Science, University of South Bohemia, Branisovskᡠ1645/31A, ˇ Ceské Budejoviceˇ (Budweis), Czech Republic d Canadian Institute for Advanced Research, 180 Dundas St W, Toronto, ON M5G 1Z8, Canada Submitted June 29, 2015; Accepted September 15, 2015 Monitoring Editor: Frank Seeber To fill the knowledge gap on the biology of the fish coccidian Goussia janae, RNA extracted from exogenously sporulated oocysts was sequenced. Analysis by Trinity and Trinotate pipelines showed that 84.6% of assembled transcripts share the highest similarity with Toxoplasma gondii and Neospora caninum. Phylogenetic and interpretive analyses from RNA-seq data provide novel insight into the metabolic capabilities, composition of the invasive machinery and the phylogenetic relationships of this parasite of cold-blooded vertebrates with other coccidians. This allows re-evaluation of the phy- logenetic position of G. janae and sheds light on the emergence of the highly successful obligatory intracellularity of apicomplexan parasites. G. janae possesses a partial glideosome and along with it, the metabolic capabilities and adaptions of G. janae might provide cues as to how apicomplexans adjusted to extra- or intra-cytoplasmic niches and also to become obligate intracellular parasites. -
Nuclear, Plastid and Mitochondrial Genes for Dna Identification, Barcoding and Phylogenetics of Apicomplexan Parasites
NUCLEAR, PLASTID AND MITOCHONDRIAL GENES FOR DNA IDENTIFICATION, BARCODING AND PHYLOGENETICS OF APICOMPLEXAN PARASITES A Thesis Presented to The Faculty of Graduate Studies of The University of Guelph by JOSEPH DAIRO OGEDENGBE In partial fulfillment of requirements for the degree of Doctor of Philosophy May, 2011 ©J. D. Ogedengbe,2011 Library and Archives Bibliotheque et 1*1 Canada Archives Canada Published Heritage Direction du Branch Patrimoine de I'edition 395 Wellington Street 395, rue Wellington Ottawa ON K1A 0N4 OttawaONK1A0N4 Canada Canada Your file Votre reference ISBN: 978-0-494-82844-1 Our file Notre reference ISBN: 978-0-494-82844-1 NOTICE: AVIS: The author has granted a non L'auteur a accorde une licence non exclusive exclusive license allowing Library and permettant a la Bibliotheque et Archives Archives Canada to reproduce, Canada de reproduire, publier, archiver, publish, archive, preserve, conserve, sauvegarder, conserver, transmettre au public communicate to the public by par telecommunication ou par Plnternet, preter, telecommunication or on the Internet, distribuer et vendre des theses partout dans le loan, distribute and sell theses monde, a des fins commerciales ou autres, sur worldwide, for commercial or non support microforme, papier, electronique et/ou commercial purposes, in microform, autres formats. paper, electronic and/or any other formats. The author retains copyright L'auteur conserve la propriete du droit d'auteur ownership and moral rights in this et des droits moraux qui protege cette these. Ni thesis. Neither the thesis nor la these ni des extraits substantiels de celle-ci substantial extracts from it may be ne doivent etre imprimes ou autrement printed or otherwise reproduced reproduits sans son autorisation. -
Virus Metagenomics in Farm Animals: a Systematic Review
viruses Review Virus Metagenomics in Farm Animals: A Systematic Review Kirsty T. T. Kwok , David F. Nieuwenhuijse , My V. T. Phan and Marion P. G. Koopmans * Department of Viroscience, Erasmus MC, 3015 Rotterdam, The Netherlands; [email protected] (K.T.T.K.); [email protected] (D.F.N.); [email protected] (M.V.T.P.) * Correspondence: [email protected] Received: 21 December 2019; Accepted: 14 January 2020; Published: 16 January 2020 Abstract: A majority of emerging infectious diseases are of zoonotic origin. Metagenomic Next-Generation Sequencing (mNGS) has been employed to identify uncommon and novel infectious etiologies and characterize virus diversity in human, animal, and environmental samples. Here, we systematically reviewed studies that performed viral mNGS in common livestock (cattle, small ruminants, poultry, and pigs). We identified 2481 records and 120 records were ultimately included after a first and second screening. Pigs were the most frequently studied livestock and the virus diversity found in samples from poultry was the highest. Known animal viruses, zoonotic viruses, and novel viruses were reported in available literature, demonstrating the capacity of mNGS to identify both known and novel viruses. However, the coverage of metagenomic studies was patchy, with few data on the virome of small ruminants and respiratory virome of studied livestock. Essential metadata such as age of livestock and farm types were rarely mentioned in available literature, and only 10.8% of the datasets were publicly available. Developing a deeper understanding of livestock virome is crucial for detection of potential zoonotic and animal pathogens and One Health preparedness. -
Phylogenomic Analysis of Integral Diiron Membrane Histidine Motif
Accepted Manuscript Phylogenomic analysis of integral diiron membrane histidine motif-containing enzymes in ciliates provides insights into their function and evolutionary rela- tionships. Nicolas G. Cid, María L. Sanchez Granel, María G. Montes, María E. Elguero, Clara B. Nudel, Alejandro D. Nusblat PII: S1055-7903(17)30098-2 DOI: http://dx.doi.org/10.1016/j.ympev.2017.05.023 Reference: YMPEV 5836 To appear in: Molecular Phylogenetics and Evolution Received Date: 31 January 2017 Revised Date: 24 May 2017 Accepted Date: 24 May 2017 Please cite this article as: Cid, N.G., Sanchez Granel, M.L., Montes, M.G., Elguero, M.E., Nudel, C.B., Nusblat, A.D., Phylogenomic analysis of integral diiron membrane histidine motif-containing enzymes in ciliates provides insights into their function and evolutionary relationships., Molecular Phylogenetics and Evolution (2017), doi: http://dx.doi.org/10.1016/j.ympev.2017.05.023 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting proof before it is published in its final form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. TITLE PAGE Phylogenomic analysis of integral diiron membrane histidine motif-containing enzymes in ciliates provides insights into their function and evolutionary relationships. Nicolas G. Cid, María L. Sanchez Granel, María G. Montes, María E. Elguero, Clara B. Nudel, Alejandro D. -
Cecal Coccidiosis in Turkeys: Comparative Biology of Eimeria Species in the Lower Intestinal Tract of Turkeys Using Genetically Typed, Single Oocyst–Derived Lines
Parasitology Research (2019) 118:583–598 https://doi.org/10.1007/s00436-018-6147-5 PROTOZOOLOGY - ORIGINAL PAPER Cecal coccidiosis in turkeys: Comparative biology of Eimeria species in the lower intestinal tract of turkeys using genetically typed, single oocyst–derived lines S. El-Sherry1,2 & M. E. Ogedengbe1 & M. A. Hafeez1,3 & M. Sayf-Al-Din2 & N. Gad2 & J. R. Barta1 Received: 31 January 2018 /Accepted: 12 November 2018 /Published online: 13 December 2018 # Springer-Verlag GmbH Germany, part of Springer Nature 2018 Abstract Differentiating the Eimeria species causing cecal coccidiosis in turkeys is challenging. To obtain benchmark biological data for Eimeria gallopavonis Hawkins 1952 and Eimeria meleagridis Tyzzer 1929 and to support the stability of the species concept for each, genetically typed, single oocyst–derived lines of E. gallopavonis Weybridge strain and E. meleagridis USAR97-01 were used to redescribe the biological, pathological, and morphological features of these parasites. Oocysts of E. meleagridis and E. gallopavonis overlap in dimensions, but oocysts of the former have a single polar granule compared with multiple in the latter. Mature first-generation meronts of E. gallopavonis were observed histologically as early as 48 h post-inoculation alongside the villi in jejunum (before and after Meckel’s diverticulum), ileum, cecal neck and rectum, but not cecal pouches. Three asexual cycles were observed suggesting that early workers apparently overlooked one asexual cycle. Examination of endogenous development of a culture labeled “Eimeria adenoeides Weybridge strain” suggested that this strain (found in a number of publications as a large oocyst strain of “Eimeria adenoeides”) matched the species description of E.