Habitat Use and Movement Patterns of Two Redwood Forest Salamanders
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Geographic Variation, Genetic Structure, and Conservation Unit Designation in the Larch Mountain Salamander (Plethodon Larselli)
University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln USGS Staff -- Published Research US Geological Survey 2005 Geographic Variation, Genetic Structure, and Conservation Unit Designation in the Larch Mountain Salamander (Plethodon larselli) R. Steven Wagner Central Washington University Mark P. Miller Utah State University, [email protected] Charles M. Crisafulli US Forest Service Susan M. Haig U.S. Geological Survey, [email protected] Follow this and additional works at: https://digitalcommons.unl.edu/usgsstaffpub Wagner, R. Steven; Miller, Mark P.; Crisafulli, Charles M.; and Haig, Susan M., "Geographic Variation, Genetic Structure, and Conservation Unit Designation in the Larch Mountain Salamander (Plethodon larselli)" (2005). USGS Staff -- Published Research. 674. https://digitalcommons.unl.edu/usgsstaffpub/674 This Article is brought to you for free and open access by the US Geological Survey at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in USGS Staff -- Published Research by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. 396 Geographic variation, genetic structure, and conservation unit designation in the Larch Mountain salamander (Plethodon larselli) R. Steven Wagner, Mark P. Miller, Charles M. Crisafulli, and Susan M. Haig Abstract: The Larch Mountain salamander (Plethodon larselli Burns, 1954) is an endemic species in the Pacific north- western United States facing threats related to habitat destruction. To facilitate development of conservation strategies, we used DNA sequences and RAPDs (random amplified polymorphic DNA) to examine differences among populations of this species. Phylogenetic analyses of cytochrome b revealed a clade of haplotypes from populations north of the Columbia River derived from a clade containing haplotypes from the river’s southwestern region. -
A Guide to Priority Plant and Animal Species in Oregon Forests
A GUIDE TO Priority Plant and Animal Species IN OREGON FORESTS A publication of the Oregon Forest Resources Institute Sponsors of the first animal and plant guidebooks included the Oregon Department of Forestry, the Oregon Department of Fish and Wildlife, the Oregon Biodiversity Information Center, Oregon State University and the Oregon State Implementation Committee, Sustainable Forestry Initiative. This update was made possible with help from the Northwest Habitat Institute, the Oregon Biodiversity Information Center, Institute for Natural Resources, Portland State University and Oregon State University. Acknowledgments: The Oregon Forest Resources Institute is grateful to the following contributors: Thomas O’Neil, Kathleen O’Neil, Malcolm Anderson and Jamie McFadden, Northwest Habitat Institute; the Integrated Habitat and Biodiversity Information System (IBIS), supported in part by the Northwest Power and Conservation Council and the Bonneville Power Administration under project #2003-072-00 and ESRI Conservation Program grants; Sue Vrilakas, Oregon Biodiversity Information Center, Institute for Natural Resources; and Dana Sanchez, Oregon State University, Mark Gourley, Starker Forests and Mike Rochelle, Weyerhaeuser Company. Edited by: Fran Cafferata Coe, Cafferata Consulting, LLC. Designed by: Sarah Craig, Word Jones © Copyright 2012 A Guide to Priority Plant and Animal Species in Oregon Forests Oregonians care about forest-dwelling wildlife and plants. This revised and updated publication is designed to assist forest landowners, land managers, students and educators in understanding how forests provide habitat for different wildlife and plant species. Keeping forestland in forestry is a great way to mitigate habitat loss resulting from development, mining and other non-forest uses. Through the use of specific forestry techniques, landowners can maintain, enhance and even create habitat for birds, mammals and amphibians while still managing lands for timber production. -
The Pine Genome Initiative- Science Plan Review
ProCoGen Training Workshop 2013 Umeå An Undiscovered Country: What Comparative Genomics Tells Us of Gymnosperm Genomes Ujwal R. Bagal, W. Walter Lorenz, Jeffrey F.D. Dean Warnell School of Forestry and Natural Resources & Institute of Bioinformatics University of Georgia Diverse Form and Life History JGI CSP - Conifer EST Project Transcriptome Assemblies Statistics Pinaceae Reads Contigs* • Pinus taeda 4,074,360 164,506 • Pinus palustris 542,503 44,975 • Pinus lambertiana 1,096,017 85,348 • Picea abies 623,144 36,867 • Cedrus atlantica 408,743 30,197 • Pseudotsuga menziesii 1,216,156 60,504 Other Conifer Families • Wollemia nobilis 471,719 35,814 • Cephalotaxus harringtonia 689,984 40,884 • Sequoia sempervirens 472,601 42,892 • Podocarpus macrophylla 584,579 36,624 • Sciadopitys verticillata 479,239 29,149 • Taxus baccata 398,037 33,142 *Assembled using MIRA http://ancangio.uga.edu/ng-genediscovery/conifer_dbMagic.jnlp Loblolly pine PAL amino acid sequence alignment Analysis Method Sequence Collection PlantTribe, PlantGDB, GenBank, Conifer DBMagic assemblies 25 taxa comprising of 71 sequences Phylogenetic analysis Maximum Likelihood: RAxML (Stamatakis et. al) Bayesian Method: MrBayes (Huelsenbeck, et al.) Tree reconciliation: NOTUNG 2.6 (Chen et al.) Phylogenetic Tree of Vascular Plant PALs Phylogenetic Analysis of Conifer PAL Gene Sequences Conifer-specific branch shown in green Amino Acids Under Relaxed Constraint Maximum Likelihood analysis Nested codon substitution models M0 : constant dN/dS ratio M2a : rate ratio ω1< 1, ω2=1 and ω3>1 M3 : (ω1< ω2< ω3) (M0, M2a, M3, M2a+S1, M2a+S2, M3+S1, M3+S2) Fitmodel version 0.5.3 ( Guindon et al. 2004) S1 : equal switching rates (alpha =beta) S2 : unequal switching rates (alpha ≠ beta) Variable gymnosperm PAL amino acid residues mapped onto a crystal structure for parsley PAL Ancestral polyploidy in seed plants and angiosperms Jiao et al. -
Aneides Vagrans Residing in the Canopy of Old-Growth Redwood Forest 1 1 1 James C
Herpetological Conservation and Biology 1(1):16-26 Submitted: June 15, 2006; Accepted: July 19, 2006 EVIDENCE OF A NEW NICHE FOR A NORTH AMERICAN SALAMANDER: ANEIDES VAGRANS RESIDING IN THE CANOPY OF OLD-GROWTH REDWOOD FOREST 1 1 1 JAMES C. SPICKLER , STEPHEN C. SILLETT , SHARYN B. MARKS , 2,3 AND HARTWELL H. WELSH, JR. 1Department of Biological Sciences, Humboldt State University, Arcata, CA 95521, USA 2Redwood Sciences Laboratory, USDA Forest Service, 1700 Bayview Drive, Arcata, CA 95521, USA 3Corresponding Author, email: [email protected] Abstract.—We investigated habitat use and movements of the wandering salamander, Aneides vagrans, in an old-growth forest canopy. We conducted a mark-recapture study of salamanders in the crowns of five large redwoods (Sequoia sempervirens) in Prairie Creek Redwoods State Park, California. This represented a first attempt to document the residency and behavior of A. vagrans in a canopy environment. We placed litter bags on 65 fern (Polypodium scouleri) mats, covering 10% of their total surface area in each tree. Also, we set cover boards on one fern mat in each of two trees. We checked cover objects 2–4 times per month during fall and winter seasons. We marked 40 individuals with elastomer tags and recaptured 13. Only one recaptured salamander moved (vertically 7 m) from its original point of capture. We compared habitats associated with salamander captures using correlation analysis and stepwise regression. At the tree-level, the best predictor of salamander abundance was water storage by fern mats. At the fern mat-level, the presence of cover boards accounted for 85% of the variability observed in captures. -
The Taxonomic Position and the Scientific Name of the Big Tree Known As Sequoia Gigantea
The Taxonomic Position and the Scientific Name of the Big Tree known as Sequoia gigantea HAROLD ST. JOHN and ROBERT W. KRAUSS l FOR NEARLY A CENTURY it has been cus ing psychological document, but its major,ity tomary to classify the big tree as Sequoia gigan vote does not settle either the taxonomy or tea Dcne., placing it in the same genus with the nomenclature of the big tree. No more the only other living species, Sequoia semper does the fact that "the National Park Service, virens (Lamb.) End!., the redwood. Both the which has almost exclusive custodY of this taxonomic placement and the nomenclature tree, has formally adopted the name Sequoia are now at issue. Buchholz (1939: 536) pro gigantea for it" (Dayton, 1943: 210) settle posed that the big tree be considered a dis the question. tinct genus, and he renamed the tree Sequoia The first issue is the generic status of the dendron giganteum (Lind!.) Buchholz. This trees. Though the two species \differ con dassification was not kindly received. Later, spicuously in foliage and in cone structure, to obtain the consensus of the Calif.ornian these differences have long been generally botanists, Dayton (1943: 209-219) sent them considered ofspecific and notofgeneric value. a questionnaire, then reported on and sum Sequoiadendron, when described by Buchholz, marized their replies. Of the 29 answering, was carefully documented, and his tabular 24 preferred the name Sequoia gigantea. Many comparison contains an impressive total of of the passages quoted show that these were combined generic and specific characters for preferences based on old custom or sentiment, his monotypic genus. -
Supporting Information
Supporting Information Mao et al. 10.1073/pnas.1114319109 SI Text BEAST Analyses. In addition to a BEAST analysis that used uniform Selection of Fossil Taxa and Their Phylogenetic Positions. The in- prior distributions for all calibrations (run 1; 144-taxon dataset, tegration of fossil calibrations is the most critical step in molecular calibrations as in Table S4), we performed eight additional dating (1, 2). We only used the fossil taxa with ovulate cones that analyses to explore factors affecting estimates of divergence could be assigned unambiguously to the extant groups (Table S4). time (Fig. S3). The exact phylogenetic position of fossils used to calibrate the First, to test the effect of calibration point P, which is close to molecular clocks was determined using the total-evidence analy- the root node and is the only functional hard maximum constraint ses (following refs. 3−5). Cordaixylon iowensis was not included in in BEAST runs using uniform priors, we carried out three runs the analyses because its assignment to the crown Acrogymno- with calibrations A through O (Table S4), and calibration P set to spermae already is supported by previous cladistic analyses (also [306.2, 351.7] (run 2), [306.2, 336.5] (run 3), and [306.2, 321.4] using the total-evidence approach) (6). Two data matrices were (run 4). The age estimates obtained in runs 2, 3, and 4 largely compiled. Matrix A comprised Ginkgo biloba, 12 living repre- overlapped with those from run 1 (Fig. S3). Second, we carried out two runs with different subsets of sentatives from each conifer family, and three fossils taxa related fi to Pinaceae and Araucariaceae (16 taxa in total; Fig. -
Management Indicator Species Review
Management Indicator Species Review Public Wheeled Motorized Travel Management Six Rivers National Forest Mad River and Lower Trinity Ranger District March 2009 July 20, 2009 edits Jan. 15, 2010 edits Prepared by: ____Kary Schick____________ Date: ___July 7, 2009____________ Kary E. Schlick Wildlife Biologist Prepared by: ____Karen Kenfield__________ Date: ___July 7, 2009____________ Karen Kenfield Fisheries Biologist Introduction Under the National Forest Management Act (NFMA), the Forest Service is directed to “provide for diversity of plant and animal communities based on the suitability and capability of the specific land area in order to meet overall multiple-use objectives.” (P.L. 94-588, Sec 6 (g) (3) (B)). The 1982 regulations implementing NFMA require that “Fish and wildlife habitat shall be managed to maintain viable populations of existing native and desired non-native vertebrate species in the planning area.” (36 CFR 219.19) Management Indicator Species (MIS) is a concept used by the agency to serve as a barometer for species viability at the Forest level. The Six Rivers National Forest Land and Resource Management Plan (LRMP) uses Management Indicator Species (MIS) to assess potential effects of management activities on the various habitats and habitat assemblages with which these species are associated. There are seven habitat assemblages containing 41 fish and wildlife species on the Forest (LRMP IV-97). Detailed descriptions of the Travel Management alternatives are found in the Travel Management Environmental Impact Statement. For the analysis associated with this project, specific MIS were addressed based on their potential to occur within the Travel Management planning. Table 1 lists the MIS and assemblages occurring on the Six Rivers National Forest, and those known or thought to occur within the planning area based on habitat suitability, survey results, or incidental sighting records. -
Ecological Role of the Salamander Ensatina Eschscholtzii: Direct Impacts on the Arthropod Assemblage and Indirect Influence on the Carbon Cycle
Ecological role of the salamander Ensatina eschscholtzii: direct impacts on the arthropod assemblage and indirect influence on the carbon cycle in mixed hardwood/conifer forest in Northwestern California By Michael Best A Thesis Presented to The faculty of Humboldt State University In Partial Fulfillment Of the Requirements for the Degree Masters of Science In Natural Resources: Wildlife August 10, 2012 ABSTRACT Ecological role of the salamander Ensatina eschscholtzii: direct impacts on the arthropod assemblage and indirect influence on the carbon cycle in mixed hardwood/conifer forest in Northwestern California Michael Best Terrestrial salamanders are the most abundant vertebrate predators in northwestern California forests, fulfilling a vital role converting invertebrate to vertebrate biomass. The most common of these salamanders in northwestern California is the salamander Ensatina (Ensatina eschsccholtzii). I examined the top-down effects of Ensatina on leaf litter invertebrates, and how these effects influence the relative amount of leaf litter retained for decomposition, thereby fostering the input of carbon and nutrients to the forest soil. The experiment ran during the wet season (November - May) of two years (2007-2009) in the Mattole watershed of northwest California. In Year One results revealed a top-down effect on multiple invertebrate taxa, resulting in a 13% difference in litter weight. The retention of more leaf litter on salamander plots was attributed to Ensatina’s selective removal of large invertebrate shedders (beetle and fly larva) and grazers (beetles, springtails, and earwigs), which also enabled small grazers (mites; barklice in year two) to become more numerous. Ensatina’s predation modified the composition of the invertebrate assemblage by shifting the densities of members of a key functional group (shredders) resulting in an overall increase in leaf litter retention. -
De Novo Characterization of the Platycladus Orientalis Transcriptome and Analysis of Photosynthesis-Related Genes During Aging
Article De novo Characterization of the Platycladus orientalis Transcriptome and Analysis of Photosynthesis-Related Genes during Aging Ermei Chang 1, Jin Zhang 1,2 , Xiamei Yao 3, Shuo Tang 4, Xiulian Zhao 1, Nan Deng 1, Shengqing Shi 1, Jianfeng Liu 1 and Zeping Jiang 1,5,* 1 State Key Laboratory of Tree Genetics and Breeding, Key Laboratory of Tree Breeding and Cultivation of National Forestry and Grassland Administration, Research Institute of Forestry, Chinese Academy of Forestry, Beijing 100091, China; [email protected] (E.C.); [email protected] (J.Z.); [email protected] (X.Z.); [email protected] (N.D.); [email protected] (S.S.); [email protected] (J.L.) 2 Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN 37831, USA 3 Fuyang Normal University, Fuyang 236037, China; [email protected] 4 Zhongshan Park, Beijing 100031, China; [email protected] 5 Research Institute of Forest Ecology, Environment and Protection, Chinese Academy of Forestry, Beijing 100091, China * Correspondence: [email protected]; Tel.: +86-010-6288-8688 Received: 27 March 2019; Accepted: 1 May 2019; Published: 3 May 2019 Abstract: In China, Platycladus orientalis has a lifespan of thousands of years. The long lifespan of these trees may be relevant for the characterization of plant aging at the molecular level. However, the molecular mechanism of the aging process of P. orientalis is still unknown. To explore the relationship between age and growth of P. orientalis, we analyzed physiological changes during P. orientalis senescence. The malondialdehyde content was greater in 200-, 700-, and 1100-year-old ancient trees than in 20-year-old trees, whereas the peroxidase and superoxide dismutase activities, as well as the soluble protein content, exhibited the opposite trend. -
26 Extreme Trees Pub 2020
Publication WSFNR-20-22C April 2020 Extreme Trees: Tallest, Biggest, Oldest Dr. Kim D. Coder, Professor of Tree Biology & Health Care / University Hill Fellow University of Georgia Warnell School of Forestry & Natural Resources Trees have a long relationship with people. They are both utility and amenity. Trees can evoke awe, mysticism, and reverence. Trees represent great public and private values. Trees most noticed and celebrated by people and communities are the one-tenth of one-percent of trees which approach the limits of their maximum size, reach, extent, and age. These singular, historic, culturally significant, and massive extreme trees become symbols and icons of life on Earth, and our role model in environmental stewardship and sustainability. What Is A Tree? Figure 1 is a conglomeration of definitions and concepts about trees from legal and word definitions in North America. For example, 20 percent of all definitions specifically state a tree is a plant. Concentrated in 63% of all descriptors for trees are four terms: plant, woody, single stem, and tall. If broad stem diameter, branching, and perennial growth habit concepts are added, 87% of all the descriptors are represented. At its most basic level, defining a tree is not species based, but is a structural definition. A tree is represented by a type of plant architecture recognizable by non-technical people. The most basic concepts for defining a tree are — a large, tall, woody, perennial plant with a single, unbranched, erect, self-supporting stem holding an elevated and distinct crown of branches, and which is greater than 10 feet in height and greater than 3 inches in diameter. -
Diet of the Del Norte Salamander (Plethodon Elongatus): Differences by Age, Gender, and Season
NORTHWESTERN NATURALIST 88:85–94 AUTUMN 2007 DIET OF THE DEL NORTE SALAMANDER (PLETHODON ELONGATUS): DIFFERENCES BY AGE, GENDER, AND SEASON CLARA AWHEELER,NANCY EKARRAKER1,HARTWELL HWELSH,JR, AND LISA MOLLIVIER Redwood Sciences Laboratory, Pacific Southwest Research Station, USDA Forest Service, 1700 Bayview Drive, Arcata, California 95521 ABSTRACT—Terrestrial salamanders are integral components of forest ecosystems and the ex- amination of their feeding habits may provide useful information regarding various ecosystem processes. We studied the diet of the Del Norte Salamander (Plethodon elongatus) and assessed diet differences between age classes, genders, and seasons. The stomachs of 309 subadult and adult salamanders, captured in spring and fall, contained 20 prey types. Nineteen were inver- tebrates, and one was a juvenile Del Norte Salamander, representing the first reported evidence of cannibalism in this species. Mites and ants represented a significant component of the diet across all age classes and genders, and diets of subadult and adult salamanders were fairly similar overall. We detected, however, an ontogenetic shift with termites and ants becoming less important and spiders and mites becoming more important with age. These differences between subadults and adults can likely be attributed to the inability of subadults to consume larger prey items due in part to gape limitation. The diet of the Del Norte Salamander, like other plethodontids, consists of a high diversity of prey items making it an opportunistic, sit-and- wait predator. Key words: Del Norte Salamander, Plethodon elongatus, food habits, diet, northern California, southern Oregon Terrestrial salamanders represent a signifi- 2005), and may require ecological conditions cant component of vertebrate biomass in forest found primarily in late seral stage forests ecosystems (Burton and Likens 1975a) and (Welsh 1990; Welsh and Lind 1995; Jones and strongly influence nutrient dynamics and en- others 2005). -
Stem Biomass and Structure of a Mature Sequoia Sempervirens Stand on the Pacific Coast of Northern California FUJIMORI, Takao: S
tktg 59(12)77 435-441 Stem Biomass and Structure of a Mature Sequoia sempervirens Stand on the Pacific Coast of Northern California Takao FUJIMORI FUJIMORI, Takao: Stem biomass and structure of a mature Sequoia semper- virens stand on the Pacific Coast of northern California J. Jap. For. Soc. 59: 435-.441, 1977 Stem biomass and structure of a virgin mature Sequoia semper- virens stand on the Pacific Coast of northern California was analyzed nondestruc- tively. The stand was multi-storied with Sequoia sempervirens dominant in all strata. Several other tree species occured in the middle and lower strata, and among them evergreen broad leaf trees were most important. Average tree height of the upper stratum was 87. 6m. Total volume and dry weight of stem were 10, 817ms/ha and 3,461 ton/ha respectively. Total basal area of stem at 1.7m height was 338m /ha. Apparent density of the dry stem per unit volume occupied by the stand (stem dry weight of the stand/product of the average tree height of the upper stratum and the stand area) was 3.95 kg/m3. A 47-year-old regen- erated Sequoia sempervirens stand was also measured; the average height of the upper stratum was 45.8m and the total basal area at 1.3m height was 152m2/ha. limas: 13 11 7 11.=71tfilitT5C1=1Ot M 4 70fINitO$MIJMIt Mirk El Mt 59: 435-441, 1977 V 7 :.--. 71+1V1130,t9Zrpn n, ..k= 4 7 (Sequoia sempervirens) OVAL,tzWMVilL,, 4t0R,V2 #33-igag Min Lizo - 03ft4ZittaffiV.c L, /t•-t 4 7 blt"."COMINTRitn1.-Clotzcath 691:111SOMMOIlitt-C", rliN cOTSL TM iciEN,Lt.:0 _EM031zitggiAlt 87.