Origins of Life in the Universe Zackary Johnson
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Regarding Belief in Primordial Soup to Explain the Origin of Life
Regarding Belief in Primordial Soup to explain the Origin of Life Belief in a primordial soup where life might spontaneously evolve is as wrong as believing the earth is flat, or, as Hoyle and Wickramasinghe (1981) suggest, as wrong as believing that the pre-Copernican idea that the earth is the center of the universe. They state, “It will be no bad thing to abandon this position” (p. 138). The belief in primordial soup goes something like this: “Somehow a brew of appropriate chemicals managed to get together, the organic soup, and somehow the chemicals managed to shuffle themselves into an early primitive life-form. From then on, all appeared to be plain-sailing, natural selection operating on randomly generated mutations would do the rest” (p. 131). Today we know that life does not arise spontaneously. In the 1860s, Louis Pasteur demonstrated that “the concept of spontaneous generation” was incorrect using “carefully designed experiments” (p. 36). Yet many biologists still “believe that life started on Earth through spontaneous processes” (p. 37). “The recourse to an organic soup to cross this biggest hurdle is evidently a blatant recourse to the spontaneous generation theory which Pasteur claimed to have destroyed. Nevertheless, most scientists, even to this day, have been satisfied to accept it” (p. 37). What scientific tests did Louis Pasteur conduct about spontaneous generation of life? How did he set up his experiment? What were his steps? What was his result? _________________________________________________________________ _________________________________________________________________ -
Revised Glossary for AQA GCSE Biology Student Book
Biology Glossary amino acids small molecules from which proteins are A built abiotic factor physical or non-living conditions amylase a digestive enzyme (carbohydrase) that that affect the distribution of a population in an breaks down starch ecosystem, such as light, temperature, soil pH anaerobic respiration respiration without using absorption the process by which soluble products oxygen of digestion move into the blood from the small intestine antibacterial chemicals chemicals produced by plants as a defence mechanism; the amount abstinence method of contraception whereby the produced will increase if the plant is under attack couple refrains from intercourse, particularly when an egg might be in the oviduct antibiotic e.g. penicillin; medicines that work inside the body to kill bacterial pathogens accommodation ability of the eyes to change focus antibody protein normally present in the body acid rain rain water which is made more acidic by or produced in response to an antigen, which it pollutant gases neutralises, thus producing an immune response active site the place on an enzyme where the antimicrobial resistance (AMR) an increasing substrate molecule binds problem in the twenty-first century whereby active transport in active transport, cells use energy bacteria have evolved to develop resistance against to transport substances through cell membranes antibiotics due to their overuse against a concentration gradient antiretroviral drugs drugs used to treat HIV adaptation features that organisms have to help infections; they -
Human Anatomy (Biology 2) Lecture Notes Updated July 2017 Instructor
Human Anatomy (Biology 2) Lecture Notes Updated July 2017 Instructor: Rebecca Bailey 1 Chapter 1 The Human Body: An Orientation • Terms - Anatomy: the study of body structure and relationships among structures - Physiology: the study of body function • Levels of Organization - Chemical level 1. atoms and molecules - Cells 1. the basic unit of all living things - Tissues 1. cells join together to perform a particular function - Organs 1. tissues join together to perform a particular function - Organ system 1. organs join together to perform a particular function - Organismal 1. the whole body • Organ Systems • Anatomical Position • Regional Names - Axial region 1. head 2. neck 3. trunk a. thorax b. abdomen c. pelvis d. perineum - Appendicular region 1. limbs • Directional Terms - Superior (above) vs. Inferior (below) - Anterior (toward the front) vs. Posterior (toward the back)(Dorsal vs. Ventral) - Medial (toward the midline) vs. Lateral (away from the midline) - Intermediate (between a more medial and a more lateral structure) - Proximal (closer to the point of origin) vs. Distal (farther from the point of origin) - Superficial (toward the surface) vs. Deep (away from the surface) • Planes and Sections divide the body or organ - Frontal or coronal 1. divides into anterior/posterior 2 - Sagittal 1. divides into right and left halves 2. includes midsagittal and parasagittal - Transverse or cross-sectional 1. divides into superior/inferior • Body Cavities - Dorsal 1. cranial cavity 2. vertebral cavity - Ventral 1. lined with serous membrane 2. viscera (organs) covered by serous membrane 3. thoracic cavity a. two pleural cavities contain the lungs b. pericardial cavity contains heart c. the cavities are defined by serous membrane d. -
Quantification of Peptide Bond Types in Human Proteome Indicates How
ics om & B te i ro o P in f f o o r l m Nahalka, J Proteomics Bioinform 2011, 4:8 a Journal of a n t r i c u s DOI: 10.4172/jpb.1000184 o J ISSN: 0974-276X Proteomics & Bioinformatics Research Article Article OpenOpen Access Access Quantification of Peptide Bond Types in Human Proteome Indicates How DNA Codons were Assembled at Prebiotic Conditions Jozef Nahalka1,2* 1Institute of Chemistry, Center for Glycomics, Slovak Academy of Sciences, Dúbravská cesta 9, SK-84538 Bratislava, Slovak Republic 2Institute of Chemistry, Center of excellence for white-green biotechnology, Slovak Academy of Sciences, Trieda Andreja Hlinku 2, SK-94976 Nitra, Slovak Republic Abstract [GADV]-protein world hypothesis [1] leaded me to quantification of decapeptides assembled from G, A, V, D in human proteome. The G, A, V, and D amino acids were related to the nucleotides Guanine (g), Cystosine (c), Uracil (u), and Adenine (a). The search revealed agreement with the genetic code. The types of prebiotic peptide bonds represent probably the first selection power that established the base order in the codons. The genetic code underwent three phases of formation, which explain why modern codons have their particular order of nucleotides: the monobase, dibase and the modern phase (tribase). Sequence alignments and 3D structures of aminoacyl-tRNA synthetases confirm the depicted picture of “relatedness” and the picture indicates how “relatedness” is used by aminoacyl-tRNA synthetases for navigation into and within of the C-terminal anticodon-binding domain. The findings presented here illustrate the novel concept of possible translation of the amino acid sequence into a nucleotide sequence that can be in interactive or contrary mode regarding to desired protein-RNA interactions. -
Origins of Life in the Universe Zackary Johnson
11/4/2007 Origins of Life in the Universe Zackary Johnson OCN201 Fall 2007 [email protected] Zackary Johnson http://www.soest.hawaii.edu/oceanography/zij/education.html Uniiiversity of Hawaii Department of Oceanography Class Schedule Nov‐2Originsof Life and the Universe Nov‐5 Classification of Life Nov‐7 Primary Production Nov‐9Consumers Nov‐14 Evolution: Processes (Steward) Nov‐16 Evolution: Adaptation() (Steward) Nov‐19 Marine Microbiology Nov‐21 Benthic Communities Nov‐26 Whale Falls (Smith) Nov‐28 The Marine Food Web Nov‐30 Community Ecology Dec‐3 Fisheries Dec‐5Global Ecology Dec‐12 Final Major Concepts TIMETABLE Big Bang! • Life started early, but not at the beginning, of Earth’s Milky Way (and other galaxies formed) history • Abiogenesis is the leading hypothesis to explain the beginning of life on Earth • There are many competing theories as to how this happened • Some of the details have been worked out, but most Formation of Earth have not • Abiogenesis almost certainly occurred in the ocean 20‐15 15‐94.5Today Billions of Years Before Present 1 11/4/2007 Building Blocks TIMETABLE Big Bang! • Universe is mostly hydrogen (H) and helium (He); for Milky Way (and other galaxies formed) example –the sun is 70% H, 28% He and 2% all else! Abundance) e • Most elements of interest to biology (C, N, P, O, etc.) were (Relativ 10 produced via nuclear fusion Formation of Earth Log at very high temperature reactions in large stars after Big Bang 20‐13 13‐94.7Today Atomic Number Billions of Years Before Present ORIGIN OF LIFE ON EARTH Abiogenesis: 3 stages Divine Creation 1. -
Origin of Life
Origin of life An explanation of what is needed for abiogenesis (or biopoiesis) Don Batten Introduction The origin of life is also known as abiogenesis or sometimes chemical evolution. Life is based on long information-rich molecules such as DNA and RNA that contain instructions for making proteins, upon which life depends. But the reading of the DNA/RNA to make proteins, and the replication of DNA or RNA to make new cells (reproduction, the mark of ‘life’) both depend on a large suite of proteins that are coded on the DNA/RNA. Both the DNA/RNA and the proteins need to be present at the same time for life to begin—a serious chicken-and-egg conundrum. Thus, the origin of life is a vexing problem for those who insist that life arose through purely natural processes (physics and chemistry alone). Some evolutionists claim that the origin of life is not a part of evolution. However, probably every evolutionary biology textbook has a section on the origin of life in the chapters on evolution. The University of California, Berkeley, has the origin of life included in their ‘Evolution 101’ course, in a section titled “From Soup to Cells—the Origin of Life”.1High-profile defenders of ‘all-things- evolutionary’, such as P.Z. Myers and Nick Matzke, agree that the origin of life is part of evolution, as does Richard Dawkins.2 A well-known evolutionist of the past, G.A. Kerkut, did make a distinction between the General Theory of Evolution (GTE), which included the origin of life, and the Special Theory of Evolution (STE) that only dealt with the diversification of life (the supposed topic of Darwin’s 1859 book).3 It is only recently that some defenders of evolution have tried to divorce the origin of life from consideration. -
Biology: Syllabus Instructor: Mr. Shannon Contact Information Steve Shannon Room 85 School Phone: (402) 443-4332 Ext
Biology: Syllabus Instructor: Mr. Shannon Contact Information Steve Shannon Room 85 School Phone: (402) 443-4332 Ext. 3224 Email: [email protected] General Course Description This course begins with a consideration of the living condition and discussion of the unique properties of living organisms that set life apart from the non-living. It continues with molecular and cellular biology, from which it moves logically into reproduction and genetics. An understanding of genetics gives meaning to organized variation, evolution and methods of scientific classification units dealing with microbiology and plant and animal phylum. This course is designed for the college-bound student. Students should expect a demanding daily homework load as well as projects, quizzes, tests, and laboratory write-ups. A high level of understanding in problem solving and the scientific methods is necessary for success in this course. Daily Class Materials Needed *Student Planner *Modern Biology textbook *3 Ring Binder/Folder *Notebook *Pen/Pencil *Calculator Daily Requirements: All students will be required to keep a 3-Ring Binder with all their classroom materials in the binder. This binder will hold the student’s Vocabulary Word List, Notes, Classroom Assignments and Activities, Labs, Quizzes, and Reviews. This notebook will be graded at the end of every chapter. General Routines and Procedures 1. BE ON TIME AND PREPARED FOR LEARNING *Respect for Others (Teachers, Students, and Community) -Ways to Show Respect to Others: 1. Make good eye contact when communicating with others 2. BE ON TIME! Punctuality is vital in today’s world. Virtually any job you may have will require you to be on time and ready to work. -
Spontaneous Generation & Origin of Life Concepts from Antiquity to The
SIMB News News magazine of the Society for Industrial Microbiology and Biotechnology April/May/June 2019 V.69 N.2 • www.simbhq.org Spontaneous Generation & Origin of Life Concepts from Antiquity to the Present :ŽƵƌŶĂůŽĨ/ŶĚƵƐƚƌŝĂůDŝĐƌŽďŝŽůŽŐLJΘŝŽƚĞĐŚŶŽůŽŐLJ Impact Factor 3.103 The Journal of Industrial Microbiology and Biotechnology is an international journal which publishes papers in metabolic engineering & synthetic biology; biocatalysis; fermentation & cell culture; natural products discovery & biosynthesis; bioenergy/biofuels/biochemicals; environmental microbiology; biotechnology methods; applied genomics & systems biotechnology; and food biotechnology & probiotics Editor-in-Chief Ramon Gonzalez, University of South Florida, Tampa FL, USA Editors Special Issue ^LJŶƚŚĞƚŝĐŝŽůŽŐLJ; July 2018 S. Bagley, Michigan Tech, Houghton, MI, USA R. H. Baltz, CognoGen Biotech. Consult., Sarasota, FL, USA Impact Factor 3.500 T. W. Jeffries, University of Wisconsin, Madison, WI, USA 3.000 T. D. Leathers, USDA ARS, Peoria, IL, USA 2.500 M. J. López López, University of Almeria, Almeria, Spain C. D. Maranas, Pennsylvania State Univ., Univ. Park, PA, USA 2.000 2.505 2.439 2.745 2.810 3.103 S. Park, UNIST, Ulsan, Korea 1.500 J. L. Revuelta, University of Salamanca, Salamanca, Spain 1.000 B. Shen, Scripps Research Institute, Jupiter, FL, USA 500 D. K. Solaiman, USDA ARS, Wyndmoor, PA, USA Y. Tang, University of California, Los Angeles, CA, USA E. J. Vandamme, Ghent University, Ghent, Belgium H. Zhao, University of Illinois, Urbana, IL, USA 10 Most Cited Articles Published in 2016 (Data from Web of Science: October 15, 2018) Senior Author(s) Title Citations L. Katz, R. Baltz Natural product discovery: past, present, and future 103 Genetic manipulation of secondary metabolite biosynthesis for improved production in Streptomyces and R. -
History of Biology - Alberto M
BIOLOGICAL SCIENCE FUNDAMENTALS AND SYSTEMATICS – Vol. I – History of Biology - Alberto M. Simonetta HISTORY OF BIOLOGY Alberto M. Simonetta Dipartimento di Biologia Animale e Genetica, “L. Pardi,” University of Firenze, Italy Keywords: Biology, history, Antiquity, Middle ages, Renaissance, morphology, palaeontology, taxonomy, evolution, histology, embryology, genetics, ethology, ecology, pathology Contents 1. Introduction 2. Antiquity 3. The Medieval and Renaissance periods 4. The Development of Morphology 5. Paleontology 6. Taxonomy and Evolution 7. Histology, Reproduction, and Embryology 8. Physiology 9. Genetics 10. Ecology and Ethology 11. Pathology Bibliography Biographical Sketch Summary A short account is given of the development of biological sciences from their Greek origins to recent times. Biology as a pure science was the creation of Aristotle, but was abandoned shortly after his death. However, considerable advances relevant for medicine continued to be made until the end of classical times, in such fields as anatomy and botany. These developments are reviewed. After a long pause, both pure and applied research began anew in the thirteenth century, and developedUNESCO at an increasing pace therea fter.– However, EOLSS unlike astronomy and physics, which experienced a startling resurgence as soon as adequate mathematical methods and instruments became available, the development of biology was steady but slow until the appearance of Darwin’s revolutionary ideas about evolution brought about a fundamental shiftSAMPLE in the subject’s outlook. TheCHAPTERS efflorescence of biological sciences in the post-Darwinian period is outlined briefly. 1. Introduction To outline more than 2000 years of biology in a few pages is an extremely difficult endeavor as, quite apart from the complexities of both the subject itself and of the technical and theoretical approaches of various scholars, the development of scholars’ views, ideas, and researches forms an intricate network that cannot be fully disentangled in such a brief account. -
Sugar in the Primordial Soup the Formose Reaction and the Origin of Life Content
Sugar in the primordial soup The formose reaction and the origin of life Content • Life from the Soup • Proteins versus RNA • Prebiotic syntheses of amino acids & nucleobases • Prebiotic synthesis of sugars • Sugar in space • Conclusion Life on Earth Now → ← 0.7×109 yrs ago – Multicellular organisms ← 1.2×109 yrs ago – Eukaryotic organisms ← 3.5×109 yrs ago – Prokaryotic organisms Prebiotic ← 4.6×109 yrs ago – Formation of Earth What started life? What compounds were present in the beginning? What compounds/reactions are required now? The primordial ”soup” N CH3CN 2 CH2OCH4 HCCCN CO2 CH2CHCN NH NCCN CO 3 H2O HCN SO2 Note: no photosynthesis - no O2! Natural products Steroids Purines Polyketides Lipids Terpenes Aminoacids Alkaloids Pyrimidines Carbohydrates Some are more important! Steroids Purines Polyketides Lipids Terpenes Aminoacids Alkaloids Pyrimidines Carbohydrates The essentials of (modern) life Proteins composed of amino acids catalyse reactions RNA composed of nucleobases, ribose and phosphate carry genetic information Which was first, RNA or proteins? Proteins – superior catalysts, simple building blocks, stable RNA – can be catalysts, complex building blocks, unstable but can replicate themselves OH O Protein HN O aminoacid NH O OH H2N Prebiotic amino acid syntheses alanine 1,7% glycine 2,1% S.L. Miller Science 117 (1952) 528-529 J. Am. Chem. Soc. 77 (1955) 2351-2361 RNA phosphodiester NH O 2 N O P O N O nucleobase N N O O OH ribose Prebiotic nucleobase syntheses J. Oró, Nature 191 (1961) 1193-1194 Common monosaccharides aldopentoses aldohexoses ketohexose ribose glucose CHO CHO H OH H OH H OH HO H H OH H OH fructose CH2OH H OH CH2OH CH2OH O HO H arabinose mannose H OH H OH CHO CHO CH2OH HO H HO H H OH HO H H OH H OH H OH CH2OH CH2OH Prebiotic carbohydrate synthesis: The Formose reaction OH CH2O (CH2O)n A. -
Contrasting Theories of Life: Historical Context, Current Theories
BioSystems 188 (2020) 104063 Contents lists available at ScienceDirect BioSystems journal homepage: www.elsevier.com/locate/biosystems Review article Contrasting theories of life: Historical context, current theories. In search of an ideal theory Athel Cornish-Bowden <, María Luz Cárdenas Aix Marseille Univ, CNRS, BIP, IMM, Marseille, France ARTICLEINFO ABSTRACT Keywords: Most attempts to define life have concentrated on individual theories, mentioning others hardly at all, but here Autocatalytic sets we compare all of the major current theories. We begin by asking how we know that an entity is alive, and Autopoiesis continue by describing the contributions of La Mettrie, Burke, Leduc, Herrera, Bahadur, D'Arcy Thompson and, Chemoton especially, Schrödinger, whose book What is Life? is a vital starting point. We then briefly describe and discuss Closure (M, R) systems, the hypercycle, the chemoton, autopoiesis and autocatalytic sets. All of these incorporate the Hypercycle Metabolic circularity idea of circularity to some extent, but all of them fail to take account of mechanisms of metabolic regulation, (M, R) systems which we regard as crucial if an organism is to avoid collapsing into a mass of unregulated reactions. In Origin of life a final section we study the extent to which each of the current theories can aid in the search for a more Self-organization complete theory of life, and explain the characteristics of metabolic control analysis that make it essential for an adequate understanding of organisms. Contents 1. General introduction -
Advanced Panspermia
obiolog str y & f A O u o l t a r e n a r c u h o J Kulczyk WK, Astrobiol Outreach 2017, 5:2 Journal of Astrobiology & Outreach DOI: 10.4172/2332-2519.1000158 ISSN: 2332-2519 Opinion Article Open Access Advanced Panspermia Wojciech Konrad Kulczyk* The New Genesis Foundation, Camberley, Surrey, UK *Corresponding author: Wojciech Konrad Kulczyk, Camberley, Surrey, UK, Tel: 44 7780796032; E-mail: [email protected] Received date: May 16, 2017; Accepted date: June 8, 2017; Published date: June 13, 2017 Copyright: © 2017 Kulczyk WK. This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. Abstract In this study a new hypothesis of advanced panspermia is proposed. The theory of panspermia is the most plausible hypothesis for explaining the origins of life on Earth and is supported by ample evidence. The current hypothesis of panspermia doesn't explain two critical milestones in the development of advanced life on Earth: the Cambrian explosion and the human brain. The Cambrian explosion saw the almost simultaneous arrival of the major body plans of all existing animals. During this time the complexity of life increased by several orders of magnitude. The second milestone also marked an enormous increase in the complexity of life. The human brain is far more complex than the animal brain and its development took place over several stages. Several hominid groups existed during the last few million years but show no link to Homo sapiens.