Life, Not Itself: Inanimacy and the Limits of Biology
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Nano-Characterization of Ceramic-Metallic Interpenetrating Phase Composite Material Using Electron Crystallography
YOUNGSTOWN STATE UNIVERSITY Nano-Characterization of Ceramic-Metallic Interpenetrating Phase Composite Material using Electron Crystallography by Marjan Moro Submitted in Partial Fulfillment of the Requirements for the Degree of Master of Science in Engineering in the Mechanical Engineering Program Mechanical and Industrial Engineering May 2012 Nano-Characterization of Ceramic-Metallic Interpenetrating Phase Composite Material using Electron Crystallography by Marjan Moro I hereby release this thesis to the public. I understand that this thesis will be made available from the OhioLINK ETD Center and the Maag Library Circulation Desk for public access. I also authorize the University or other individuals to make copies of this thesis as needed for scholarly research. Signature: Marjan Moro, Student Date Approvals: Dr. Virgil C. Solomon, Thesis Advisor Date Dr. Matthias Zeller, Committee Member Date Dr. Timothy R. Wagner, Committee Member Date Dr. Hyun W. Kim, Committee Member Date Dr. Peter J. Kasvinsky, Dean of Graduate Studies Date i Abstract Interpenetrating phase composites (IPCs) have unique mechanical and physical proper- ties and thanks to these they could replace traditional single phase materials in numbers of applications. The most common IPCs are ceramic-metallic systems in which a duc- tile metal supports a hard ceramic making it an excellent composite material. Fireline, Inc., from Youngstown, OH manufactures such IPCs using an Al alloy-Al2O3 based ceramic-metallic composite material. This product is fabricated using a Reactive Metal Penetration (RMP) process to form two interconnected networks. Fireline products are used, among others, as refractory materials for handling of high temperature molten metals. A novel route to adding a shape memory metal phase within a ceramic matrix has been proposed. -
Revised Glossary for AQA GCSE Biology Student Book
Biology Glossary amino acids small molecules from which proteins are A built abiotic factor physical or non-living conditions amylase a digestive enzyme (carbohydrase) that that affect the distribution of a population in an breaks down starch ecosystem, such as light, temperature, soil pH anaerobic respiration respiration without using absorption the process by which soluble products oxygen of digestion move into the blood from the small intestine antibacterial chemicals chemicals produced by plants as a defence mechanism; the amount abstinence method of contraception whereby the produced will increase if the plant is under attack couple refrains from intercourse, particularly when an egg might be in the oviduct antibiotic e.g. penicillin; medicines that work inside the body to kill bacterial pathogens accommodation ability of the eyes to change focus antibody protein normally present in the body acid rain rain water which is made more acidic by or produced in response to an antigen, which it pollutant gases neutralises, thus producing an immune response active site the place on an enzyme where the antimicrobial resistance (AMR) an increasing substrate molecule binds problem in the twenty-first century whereby active transport in active transport, cells use energy bacteria have evolved to develop resistance against to transport substances through cell membranes antibiotics due to their overuse against a concentration gradient antiretroviral drugs drugs used to treat HIV adaptation features that organisms have to help infections; they -
Human Anatomy (Biology 2) Lecture Notes Updated July 2017 Instructor
Human Anatomy (Biology 2) Lecture Notes Updated July 2017 Instructor: Rebecca Bailey 1 Chapter 1 The Human Body: An Orientation • Terms - Anatomy: the study of body structure and relationships among structures - Physiology: the study of body function • Levels of Organization - Chemical level 1. atoms and molecules - Cells 1. the basic unit of all living things - Tissues 1. cells join together to perform a particular function - Organs 1. tissues join together to perform a particular function - Organ system 1. organs join together to perform a particular function - Organismal 1. the whole body • Organ Systems • Anatomical Position • Regional Names - Axial region 1. head 2. neck 3. trunk a. thorax b. abdomen c. pelvis d. perineum - Appendicular region 1. limbs • Directional Terms - Superior (above) vs. Inferior (below) - Anterior (toward the front) vs. Posterior (toward the back)(Dorsal vs. Ventral) - Medial (toward the midline) vs. Lateral (away from the midline) - Intermediate (between a more medial and a more lateral structure) - Proximal (closer to the point of origin) vs. Distal (farther from the point of origin) - Superficial (toward the surface) vs. Deep (away from the surface) • Planes and Sections divide the body or organ - Frontal or coronal 1. divides into anterior/posterior 2 - Sagittal 1. divides into right and left halves 2. includes midsagittal and parasagittal - Transverse or cross-sectional 1. divides into superior/inferior • Body Cavities - Dorsal 1. cranial cavity 2. vertebral cavity - Ventral 1. lined with serous membrane 2. viscera (organs) covered by serous membrane 3. thoracic cavity a. two pleural cavities contain the lungs b. pericardial cavity contains heart c. the cavities are defined by serous membrane d. -
Division of Academic Affairs Technology Fee – Project Proposal 2015
Division of Academic Affairs Technology Fee – Project Proposal 2015 Proposal Deadline: Wednesday, January 21, 2015 Project Proposal Type Instructional Technology Enhancement Project (ITEP) Focused projects proposed by an individual or small team with the intention of exploring new applications of instructional technology. ITEPs will typically be led by a faculty “principal investigator.” ITEPs are time-limited projects (up to two years in length) and allocations of Technology Fee funds to these projects are non-recurring. Project Title Crystallography Training Across the Sciences Total Amount of Funding Requested $9,100 Primary Project Coordinator Tim Royappa, Department of Chemistry Crystallography Training Across the Sciences Tim Royappa Department of Chemistry I. Project Description a. Introduction Crystallography has become an indispensable technique in the physical and life sciences. Its im- portance is demonstrated in Table 1, which outlines the chief developments in crystallography since its inception in the early 20th century. In fact, 2014 was designated as the International Year of Crystallography, and the key contributions of crystallography to a wide variety of science disciplines were celebrated across the globe. The reason that crystallography is so important is that it is the best way to elucidate the atomic structure of matter, leading to a better understanding of its physical, chemical and biological properties. Era Discovery/Advance in Crystallography Major Awards Diffraction of X-rays by crystals discovered by Paul Nobel Prize in Physics (1914) Ewald and Max von Laue; von Laue formulates the to von Laue; Nobel Prize in 1910s basics of crystallography; William L. Bragg works out Physics (1915) to Bragg and the fundamental equation of crystallography his father, William H. -
MSE 403: Ceramic Materials
MSE 403: Ceramic Materials Course description: Processing, characteristics, microstructure and properties of ceramic materials. Number of credits: 3 Course Coordinator: John McCloy Prerequisites by course: MSE 201 Prerequisites by topic: 1. Basic knowledge of thermodynamics. 2. Elementary crystallography and crystal structure. 3. Mechanical behavior of materials. Postrequisites: None Textbooks/other required 1. Carter, C.B. and Norton, M.G. Ceramic Materials Science and Engineering, materials: Springer, 2007. Course objectives: 1. Review of crystallography and crystal structure. 2. Review of structure of atoms, molecules and bonding in ceramics. 3. Discussion on structure of ceramics. 4. Effects of structure on physical properties. 5. Ceramic Phase diagrams. 6. Discussion on defects in ceramics. 7. Introduction to glass. 8. Discussion on processing of ceramics. 9. Introduction to sintering and grain growth. 10. Introduction to mechanical properties of ceramics. 11. Introduction to electrical properties of ceramics. 12. Introduction to bioceramics. 13. Introduction to magnetic ceramics. Topics covered: 1. Introduction to crystal structure and crystallography. 2. Fundamentals of structure of atoms. 3. Structure of ceramics and its influence on properties. 4. Binary and ternary phase diagrams. 5. Point defects in ceramics. 6. Glass and glass-ceramic composites. 7. Ceramics processing and sintering. 8. Mechanical properties of ceramics. 9. Electrical properties of ceramics. 10. Bio-ceramics. 11. Ceramic magnets. Expected student outcomes: 1. Knowledge of crystal structure of ceramics. 2. Knowledge of structure-property relationship in ceramics. 3. Knowledge of the defects in ceramics (Point defects). 4. Knowledge of glass and glass-ceramic composite materials. 5. Introductory knowledge on the processing of bulk ceramics. 6. Applications of ceramic materials in structural, biological and electrical components. -
A Model on the Evolution of Cryptobiosis
Ann. Zool. Fennici 40: 331–340 ISSN 0003-455X Helsinki 29 August 2003 © Finnish Zoological and Botanical Publishing Board 2003 A model on the evolution of cryptobiosis K. Ingemar Jönsson* & Johannes Järemo Department of Theoretical Ecology, Lund University, Ecology Building, SE-223 62 Lund, Sweden (*e-mail: [email protected]) Received 18 Nov. 2002, revised version received 5 Mar. 2003, accepted 6 Mar. 2003 Jönsson, K. I. & Järemo, J. 2003: A model on the evolution of cryptobiosis. — Ann. Zool. Fennici 40: 331–340. Cryptobiosis is an ametabolic state of life entered by some lower organisms (among metazoans mainly rotifers, tardigrades and nematodes) in response to adverse environ- mental conditions. Despite a long recognition of cryptobiotic organisms, the evolution- ary origin and life history consequences of this biological phenomenon have remained unexplored. We present one of the fi rst theoretical models on the evolution of cryptobi- osis, using a hypothetical population of marine tardigrades that migrates between open sea and the tidal zone as the model framework. Our model analyses the conditions under which investments into anhydrobiotic (cryptobiosis induced by desiccation) functions will evolve, and which factors affect the optimal level of such investments. In particular, we evaluate how the probability of being exposed to adverse conditions (getting stranded) and the consequences for survival of such exposure (getting desic- cated) affects the option for cryptobiosis to evolve. The optimal level of investment into anhydrobiotic traits increases with increasing probability of being stranded as well as with increasing negative survival effects of being stranded. However, our analysis shows that the effect on survival of being stranded is a more important parameter than the probability of stranding for the evolution of anhydrobiosis. -
286999528.Pdf
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Basic Crystallography – Data Collection and Processing
Basic Crystallography – Data collection and processing Louise N. Dawe, PhD Wilfrid Laurier University Department of Chemistry and Biochemistry References and Additional Resources Faculty of Science, Bijvoet Center for Biomolecular Research, Crystal and Structural Chemistry. ‘Interpretation of Crystal Structure Determinations’ 2005 Course Notes: http://www.cryst.chem.uu.nl/huub/notesweb.pdf The University of Oklahoma: Chemical Crystallography Lab. Crystallography Notes and Manuals. http://xrayweb.chem.ou.edu/notes/index.html Müller, P. Crystallographic Reviews, 2009, 15(1), 57-83. Müller, Peter. 5.069 Crystal Structure Analysis, Spring 2010. (Massachusetts Institute of Technology: MIT OpenCourseWare), http://ocw.mit.edu/courses/chemistry/5- 069-crystal-structure-analysis-spring-2010/. License: Creative Commons BY-NC-SA X-ray Crystallography Data Collection and Processing • Select and mount the crystal. • Center the crystal to the center of the goniometer circles (instrument maintenance.) • Collect several images; index the diffraction spots; refine the cell parameters; check for higher metric symmetry • Determine data collection strategy; collect data. • Reduce the data by applying background, profile (spot- shape), Lorentz, polarization and scaling corrections. • Determine precise cell parameters. • Collect appropriate information for an absorption correction. (Index the faces of the crystal. A highly redundant set of data is sufficient for an empirical absorption correction.) • Apply an absorption correction to the data. (http://xrayweb.chem.ou.edu/notes/collect.html) Single crystal diffraction of X-rays Principle quantum number n = 1 K level Note: The non SI unit Å is normally used. n = 2 L level 1 Å = 10-10 m n = 3 M level etc… L to K transitions produce 'Ka' emission M to K transitions produce 'Kb' emission. -
Structure Determination by X-Ray Crystallography
Chem 406: Biophysical Chemistry Lecture 7: Structure Determination by X-ray Crystallography I. Introduction A. Most of the structures in the Protein Data Bank (PDB) were determined by x-ray diffraction. 1. PDB Statistics 2. Other names for x-ray diffraction a. x-ray crystallography b. crystallography B. In the past couple of years there has been a growing number of structures, particularly of small proteins and peptides, that have been solved using a combination nuclear magnetic resonance (NMR) and computational chemistry. 1. PDB Statistics C. The structural information obtained from these techniques are the coordinates of the atoms in the molecule. Overhead 1 (Print out of a PDB file) II. Image magnification A. We will look first at techniques that determine structures by producing images; these include light microscopy, electron microscopy and X-ray crystallography; first, though, we need to look into the properties of light. B. Light 1. The wavelike nature of light (electromagnetic radiation) a. Light waves are depicted as having oscillating electric and magnetic field components that are at right angles to one another. b. These waves are described using the following parameters. Overhead 2 and on board ( a light wave) i. wavelength () ii. frequency ( = c/) iii. Energy (E = h) 1. The constant h, is Planck’s constant and is equal to 6.63 x 10-34 Js (Joule-seconds). 2. Light scattering and refraction a. When light passes through matter the oscillating electrical field polarizes the atoms present in the matter. i. Remember that atoms are made of a nucleus containing positively charged protons and is surrounded by negatively charged electrons. -
Simplified Protein Design Biased for Prebiotic Amino Acids Yields A
Simplified protein design biased for prebiotic amino acids yields a foldable, halophilic protein Liam M. Longo, Jihun Lee1, and Michael Blaber2 Department of Biomedical Sciences, Florida State University, Tallahassee, FL 32306-4300 Edited by Brian W. Matthews, University of Oregon, Eugene, OR, and approved December 19, 2012 (received for review November 9, 2012) A compendium of different types of abiotic chemical syntheses reducing the potential diversity of interactions that can be encoded identifies a consensus set of 10 “prebiotic” α-amino acids. Before the to that of currently proposed theoretic limits for foldability (14– emergence of biosynthetic pathways, this set is the most plausible 16) (thus, to be able to support protein foldability, the 10 pre- resource for protein formation (i.e., proteogenesis) within the overall biotic amino acids would need to be a remarkably efficient selec- process of abiogenesis. An essential unsolved question regarding tion); (ii) aromatic residues, key contributors to extensive van der this prebiotic set is whether it defines a “foldable set”—that is, does Waals interactions in hydrophobic cores that serve as a driving force it contain sufficient chemical information to permit cooperatively for protein collapse, are absent in the prebiotic alphabet; and (iii) folding polypeptides? If so, what (if any) characteristic properties there are no basic amino acids in the prebiotic set, thus restricting might such polypeptides exhibit? To investigate these questions, protein design to acidic polypeptides, limiting the presence of salt two “primitive” versions of an extant protein fold (the β-trefoil) were bridge interactions and resulting in acidic pI (1, 3). produced by top-down symmetric deconstruction, resulting in a re- To date, there has been no experimental demonstration that the duced alphabet size of 12 or 13 amino acids and a percentage of prebiotic set of amino acids comprises a foldable set; additionally, prebiotic amino acids approaching 80%. -
Biology: Syllabus Instructor: Mr. Shannon Contact Information Steve Shannon Room 85 School Phone: (402) 443-4332 Ext
Biology: Syllabus Instructor: Mr. Shannon Contact Information Steve Shannon Room 85 School Phone: (402) 443-4332 Ext. 3224 Email: [email protected] General Course Description This course begins with a consideration of the living condition and discussion of the unique properties of living organisms that set life apart from the non-living. It continues with molecular and cellular biology, from which it moves logically into reproduction and genetics. An understanding of genetics gives meaning to organized variation, evolution and methods of scientific classification units dealing with microbiology and plant and animal phylum. This course is designed for the college-bound student. Students should expect a demanding daily homework load as well as projects, quizzes, tests, and laboratory write-ups. A high level of understanding in problem solving and the scientific methods is necessary for success in this course. Daily Class Materials Needed *Student Planner *Modern Biology textbook *3 Ring Binder/Folder *Notebook *Pen/Pencil *Calculator Daily Requirements: All students will be required to keep a 3-Ring Binder with all their classroom materials in the binder. This binder will hold the student’s Vocabulary Word List, Notes, Classroom Assignments and Activities, Labs, Quizzes, and Reviews. This notebook will be graded at the end of every chapter. General Routines and Procedures 1. BE ON TIME AND PREPARED FOR LEARNING *Respect for Others (Teachers, Students, and Community) -Ways to Show Respect to Others: 1. Make good eye contact when communicating with others 2. BE ON TIME! Punctuality is vital in today’s world. Virtually any job you may have will require you to be on time and ready to work. -
Responses of Invertebrates to Temperature and Water Stress A
Author's Accepted Manuscript Responses of invertebrates to temperature and water stress: A polar perspective M.J. Everatt, P. Convey, J.S. Bale, M.R. Worland, S.A.L. Hayward www.elsevier.com/locate/jtherbio PII: S0306-4565(14)00071-0 DOI: http://dx.doi.org/10.1016/j.jtherbio.2014.05.004 Reference: TB1522 To appear in: Journal of Thermal Biology Received date: 21 August 2013 Revised date: 22 January 2014 Accepted date: 22 January 2014 Cite this article as: M.J. Everatt, P. Convey, J.S. Bale, M.R. Worland, S.A.L. Hayward, Responses of invertebrates to temperature and water stress: A polar perspective, Journal of Thermal Biology, http://dx.doi.org/10.1016/j.jther- bio.2014.05.004 This is a PDF file of an unedited manuscript that has been accepted for publication. As a service to our customers we are providing this early version of the manuscript. The manuscript will undergo copyediting, typesetting, and review of the resulting galley proof before it is published in its final citable form. Please note that during the production process errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain. 1 Responses of invertebrates to temperature and water 2 stress: A polar perspective 3 M. J. Everatta, P. Conveyb, c, d, J. S. Balea, M. R. Worlandb and S. A. L. 4 Haywarda* a 5 School of Biosciences, University of Birmingham, Edgbaston, Birmingham B15 2TT, UK b 6 British Antarctic Survey, Natural Environment Research Council, High Cross, Madingley Road, 7 Cambridge, CB3 0ET, UK 8 cNational Antarctic Research Center, IPS Building, University Malaya, 50603 Kuala Lumpur, 9 Malaysia 10 dGateway Antarctica, University of Canterbury, Private Bag 4800, Christchurch 8140, New Zealand 11 12 *Corresponding author.