IB Biology Syllabus – Definitions
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Intelligent Design, Abiogenesis, and Learning from History: Dennis R
Author Exchange Intelligent Design, Abiogenesis, and Learning from History: Dennis R. Venema A Reply to Meyer Dennis R. Venema Weizsäcker’s book The World View of Physics is still keeping me very busy. It has again brought home to me quite clearly how wrong it is to use God as a stop-gap for the incompleteness of our knowledge. If in fact the frontiers of knowledge are being pushed back (and that is bound to be the case), then God is being pushed back with them, and is therefore continually in retreat. We are to find God in what we know, not in what we don’t know; God wants us to realize his presence, not in unsolved problems but in those that are solved. Dietrich Bonhoeffer1 am thankful for this opportunity to nature, is the result of intelligence. More- reply to Stephen Meyer’s criticisms over, this assertion is proffered as the I 2 of my review of his book Signature logical basis for inferring design for the in the Cell (hereafter Signature). Meyer’s origin of biological information: if infor- critiques of my review fall into two gen- mation only ever arises from intelli- eral categories. First, he claims I mistook gence, then the mere presence of Signature for an argument against bio- information demonstrates design. A few logical evolution, rendering several of examples from Signature make the point my arguments superfluous. Secondly, easily: Meyer asserts that I have failed to refute … historical scientists can show that his thesis by not providing a “causally a presently acting cause must have adequate alternative explanation” for the been present in the past because the origin of life in that the few relevant cri- proposed candidate is the only known tiques I do provide are “deeply flawed.” cause of the effect in question. -
Revised Glossary for AQA GCSE Biology Student Book
Biology Glossary amino acids small molecules from which proteins are A built abiotic factor physical or non-living conditions amylase a digestive enzyme (carbohydrase) that that affect the distribution of a population in an breaks down starch ecosystem, such as light, temperature, soil pH anaerobic respiration respiration without using absorption the process by which soluble products oxygen of digestion move into the blood from the small intestine antibacterial chemicals chemicals produced by plants as a defence mechanism; the amount abstinence method of contraception whereby the produced will increase if the plant is under attack couple refrains from intercourse, particularly when an egg might be in the oviduct antibiotic e.g. penicillin; medicines that work inside the body to kill bacterial pathogens accommodation ability of the eyes to change focus antibody protein normally present in the body acid rain rain water which is made more acidic by or produced in response to an antigen, which it pollutant gases neutralises, thus producing an immune response active site the place on an enzyme where the antimicrobial resistance (AMR) an increasing substrate molecule binds problem in the twenty-first century whereby active transport in active transport, cells use energy bacteria have evolved to develop resistance against to transport substances through cell membranes antibiotics due to their overuse against a concentration gradient antiretroviral drugs drugs used to treat HIV adaptation features that organisms have to help infections; they -
The Hidden Kingdom
INTRODUCTION Fungi—The Hidden Kingdom OBJECTIVE • To provide students with basic knowledge about fungi Activity 0.1 BACKGROUND INFORMATION The following text provides an introduction to the fungi. It is written with the intention of sparking curiosity about this GRADES fascinating biological kingdom. 4-6 with a K-3 adaptation TEACHER INSTRUCTIONS TYPE OF ACTIVITY 1. With your class, brainstorm everything you know about fungi. Teacher read/comprehension 2. For younger students, hand out the question sheet before you begin the teacher read and have them follow along and MATERIALS answer the questions as you read. • copies of page 11 3. For older students, inform them that they will be given a • pencils brainteaser quiz (that is not for evaluation) after you finish reading the text. VOCABULARY 4. The class can work on the questions with partners or in groups bioremediation and then go over the answers as a class. Discuss any chitin particularly interesting facts and encourage further fungi independent research. habitat hyphae K-3 ADAPTATION kingdom 1. To introduce younger students to fungi, you can make a KWL lichens chart either as a class or individually. A KWL chart is divided moulds into three parts. The first tells what a student KNOWS (K) mushrooms about a subject before it is studied in class. The second part mycelium tells what the student WANTS (W) to know about that subject. mycorrhizas The third part tells what the child LEARNED (L) after studying nematodes that subject. parasitic fungi 2. Share some of the fascinating fungal facts presented in the photosynthesis “Fungi—The Hidden Kingdom” text with your students. -
Biological Membranes and Transport Membranes Define the External
Biological Membranes and Transport Membranes define the external boundaries of cells and regulate the molecular traffic across that boundary; in eukaryotic cells, they divide the internal space into discrete compartments to segregate processes and components. Membranes are flexible, self-sealing, and selectively permeable to polar solutes. Their flexibility permits the shape changes that accompany cell growth and movement (such as amoeboid movement). With their ability to break and reseal, two membranes can fuse, as in exocytosis, or a single membrane-enclosed compartment can undergo fission to yield two sealed compartments, as in endocytosis or cell division, without creating gross leaks through cellular surfaces. Because membranes are selectively permeable, they retain certain compounds and ions within cells and within specific cellular compartments, while excluding others. Membranes are not merely passive barriers. Membranes consist of just two layers of molecules and are therefore very thin; they are essentially two-dimensional. Because intermolecular collisions are far more probable in this two-dimensional space than in three-dimensional space, the efficiency of enzyme-catalyzed processes organized within membranes is vastly increased. The Molecular Constituents of Membranes Molecular components of membranes include proteins and polar lipids, which account for almost all the mass of biological membranes, and carbohydrate present as part of glycoproteins and glycolipids. Each type of membrane has characteristic lipids and proteins. The relative proportions of protein and lipid vary with the type of membrane, reflecting the diversity of biological roles (as shown in table 12-1, see below). For example, plasma membranes of bacteria and the membranes of mitochondria and chloroplasts, in which many enzyme-catalyzed processes take place, contain more protein than lipid. -
Framing Major Prebiotic Transitions As Stages of Protocell Development: Three Challenges for Origins-Of-Life Research
Framing major prebiotic transitions as stages of protocell development: three challenges for origins-of-life research Ben Shirt-Ediss1, Sara Murillo-Sánchez2,3 and Kepa Ruiz-Mirazo*2,3 Commentary Open Access Address: Beilstein J. Org. Chem. 2017, 13, 1388–1395. 1Interdisciplinary Computing and Complex BioSystems Group, doi:10.3762/bjoc.13.135 University of Newcastle, UK, 2Dept. Logic and Philosophy of Science, University of the Basque Country, Spain and 3Biofisika Institute Received: 16 February 2017 (CSIC, UPV-EHU), Spain Accepted: 27 June 2017 Published: 13 July 2017 Email: Kepa Ruiz-Mirazo* - [email protected] This article is part of the Thematic Series "From prebiotic chemistry to molecular evolution". * Corresponding author Guest Editor: L. Cronin Keywords: functional integration; origins of life; prebiotic evolution; protocells © 2017 Shirt-Ediss et al.; licensee Beilstein-Institut. License and terms: see end of document. Abstract Conceiving the process of biogenesis as the evolutionary development of highly dynamic and integrated protocell populations provides the most appropriate framework to address the difficult problem of how prebiotic chemistry bridged the gap to full-fledged living organisms on the early Earth. In this contribution we briefly discuss the implications of taking dynamic, functionally inte- grated protocell systems (rather than complex reaction networks in bulk solution, sets of artificially evolvable replicating molecules, or even these same replicating molecules encapsulated in passive compartments) -
Human Anatomy (Biology 2) Lecture Notes Updated July 2017 Instructor
Human Anatomy (Biology 2) Lecture Notes Updated July 2017 Instructor: Rebecca Bailey 1 Chapter 1 The Human Body: An Orientation • Terms - Anatomy: the study of body structure and relationships among structures - Physiology: the study of body function • Levels of Organization - Chemical level 1. atoms and molecules - Cells 1. the basic unit of all living things - Tissues 1. cells join together to perform a particular function - Organs 1. tissues join together to perform a particular function - Organ system 1. organs join together to perform a particular function - Organismal 1. the whole body • Organ Systems • Anatomical Position • Regional Names - Axial region 1. head 2. neck 3. trunk a. thorax b. abdomen c. pelvis d. perineum - Appendicular region 1. limbs • Directional Terms - Superior (above) vs. Inferior (below) - Anterior (toward the front) vs. Posterior (toward the back)(Dorsal vs. Ventral) - Medial (toward the midline) vs. Lateral (away from the midline) - Intermediate (between a more medial and a more lateral structure) - Proximal (closer to the point of origin) vs. Distal (farther from the point of origin) - Superficial (toward the surface) vs. Deep (away from the surface) • Planes and Sections divide the body or organ - Frontal or coronal 1. divides into anterior/posterior 2 - Sagittal 1. divides into right and left halves 2. includes midsagittal and parasagittal - Transverse or cross-sectional 1. divides into superior/inferior • Body Cavities - Dorsal 1. cranial cavity 2. vertebral cavity - Ventral 1. lined with serous membrane 2. viscera (organs) covered by serous membrane 3. thoracic cavity a. two pleural cavities contain the lungs b. pericardial cavity contains heart c. the cavities are defined by serous membrane d. -
Membrane Transport, Absorption and Distribution of Drugs
Chapter 2 1 Pharmacokinetics: Membrane Transport, Absorption and Distribution of Drugs Pharmacokinetics is the quantitative study of drug movement in, through and out of the body. The overall scheme of pharmacokinetic processes is depicted in Fig. 2.1. The intensity of response is related to concentration of the drug at the site of action, which in turn is dependent on its pharmacokinetic properties. Pharmacokinetic considerations, therefore, determine the route(s) of administration, dose, and latency of onset, time of peak action, duration of action and frequency of administration of a drug. Fig. 2.1: Schematic depiction of pharmacokinetic processes All pharmacokinetic processes involve transport of the drug across biological membranes. Biological membrane This is a bilayer (about 100 Å thick) of phospholipid and cholesterol molecules, the polar groups (glyceryl phosphate attached to ethanolamine/choline or hydroxyl group of cholesterol) of these are oriented at the two surfaces and the nonpolar hydrocarbon chains are embedded in the matrix to form a continuous sheet. This imparts high electrical resistance and relative impermeability to the membrane. Extrinsic and intrinsic protein molecules are adsorbed on the lipid bilayer (Fig. 2.2). Glyco- proteins or glycolipids are formed on the surface by attachment to polymeric sugars, 2 aminosugars or sialic acids. The specific lipid and protein composition of different membranes differs according to the cell or the organelle type. The proteins are able to freely float through the membrane: associate and organize or vice versa. Some of the intrinsic ones, which extend through the full thickness of the membrane, surround fine aqueous pores. CHAPTER2 Fig. -
Chapter 2 Cell Membranes
Chapter 2 Cell Membranes © 2020 Elsevier Inc. All rights reserved. Figure 2–1 The hydrophobic effect drives rearrangement of lipids, including the formation of bilayers. The driving force of the hydrophobic effect is the tendency of water molecules to maximize their hydrogen bonding between the oxygen and hydrogen atoms. Phospholipids placed in water would potentially disrupt the hydrogen bonding of water clusters. This causes the phospholipids to bury their nonpolar tails by forming micelles, bilayers, or monolayers. Which of the lipid structures is preferred depends on the lipids and the environment. The shape of the molecules (size of the head group and characteristics of the side chains) can determine lipid structure. (A) Molecules that have an overall inverted conical shape, such as detergent molecules, form structures with a positive curvature, such as micelles. (B) Cylindrical-shaped lipid molecules such as some phospholipids preferentially form bilayer structures. (C) Biological membranes combine a large variety of lipid molecular species. The combination of these structures determines the overall shape of the bilayer, and a change in composition or distribution will lead to a change in shape of the bilayer. Similarly a change in shape needs to be accommodated by a change in composition and organization of the lipid core. © 2020 Elsevier Inc. All rights reserved. 2 Figure 2–2 The principle of the fluid mosaic model of biological membranes as proposed by Singer and Nicolson. In this model, globular integral membrane proteins are freely mobile within a sea of phospholipids and cholesterol. © 2020 Elsevier Inc. All rights reserved. 3 Figure 2–3 Structure of phospholipids. -
Tissue Tregs and Maintenance of Tissue Homeostasis
fcell-09-717903 August 12, 2021 Time: 13:32 # 1 REVIEW published: 18 August 2021 doi: 10.3389/fcell.2021.717903 Tissue Tregs and Maintenance of Tissue Homeostasis Qing Shao1,2,3,4†, Jian Gu1,2,3,4†, Jinren Zhou1,2,3,4†, Qi Wang1,2,3,4, Xiangyu Li1,2,3,4, Zhenhua Deng1,2,3,4 and Ling Lu1,2,3,4* 1 Hepatobiliary Center, The First Affiliated Hospital of Nanjing Medical University, Nanjing, China, 2 Research Unit of Liver Transplantation and Transplant Immunology, Chinese Academy of Medical Sciences, Nanjing, China, 3 Jiangsu Cancer Hospital, Jiangsu Institute of Cancer Research, Nanjing Medical University Affiliated Cancer Hospital, Nanjing, China, 4 Jiangsu Key Laboratory of Cancer Biomarkers, Prevention and Treatment, Collaborative Innovation Center for Cancer Personalized Medicine, Nanjing Medical University, Nanjing, China Regulatory T cells (Tregs) specifically expressing Forkhead box P3 (Foxp3) play roles in suppressing the immune response and maintaining immune homeostasis. Edited by: After maturation in the thymus, Tregs leave the thymus and migrate to lymphoid Ivan Dzhagalov, tissues or non-lymphoid tissues. Increasing evidence indicates that Tregs with unique National Yang-Ming University, Taiwan characteristics also have significant effects on non-lymphoid peripheral tissues. Tissue- Reviewed by: resident Tregs, also called tissue Tregs, do not recirculate in the blood or lymphatics Dipayan Rudra, ImmunoBiome Inc., South Korea and attain a unique phenotype distinct from common Tregs in circulation. This review Ying Shao, first summarizes the phenotype, function, and cytokine expression of these Tregs in Temple University, United States visceral adipose tissue, skin, muscle, and other tissues. Then, how Tregs are generated, *Correspondence: Ling Lu home, and are attracted to and remain resident in the tissue are discussed. -
Biological Membranes Transport
9/15/2014 Advanced Cell Biology Biological Membranes Transport 1 1 9/15/2014 3 4 2 9/15/2014 Transport through cell membranes • The phospholipid bilayer is a good barrier around cells, especially to water soluble molecules. However, for the cell to survive some materials need to be able to enter and leave the cell. • There are 4 basic mechanisms: 1. DIFFUSION and FACILITATED DIFFUSION 2. OSMOSIS 3. ACTIVE TRANSPORT 4. BULK TRANSPORT AS Biology, Cell membranes and 5 Transport 11.3 Solute Transport across Membranes 6 3 9/15/2014 Passive Transport Is Facilitated by Membrane Proteins Energy changes accompanying passage of a hydrophilic solute through the lipid bilayer of a biological membrane 7 Figure 11.2 Overview of membrane transport proteins. 4 9/15/2014 Figure 11.3 Multiple membrane transport proteins function together in the plasma membrane of metazoan cells. 5 9/15/2014 • Facilitated transport – Passive transport – Glucose – GLUT Cellular uptake of glucose mediated by GLUT proteins exhibits simple enzyme kinetics 11 12 6 9/15/2014 Regulation by insulin of glucose transport by GLUT4 into a myocyte 13 Effects of Osmosis on Water Balance • Osmosis is the diffusion of water across a selectively permeable membrane • The direction of osmosis is determined only by a difference in total solute concentration • Water diffuses across a membrane from the region of lower solute concentration to the region of higher solute concentration 7 9/15/2014 Water Balance of Cells Without Walls • Tonicity is the ability of a solution to cause a cell to gain -
Fermentation and Anaerobic Decomposition in a Hot Spring
Fermentation and anaerobic decomposition in a hot spring microbial mat by Karen Leigh Anderson A thesis submitted in partial fulfillment of requirements for the degree of Master of Science in Microbiology Montana State University © Copyright by Karen Leigh Anderson (1984) Abstract: Fermentation was investigated in a low sulfate hot spring microbial mat (Octopus Spring) according to current models on anaerobic decomposition. The mat was studied to determine what fermentation products accumulated, where in the mat they accumulated, and what factors affected their accumulation. Mat samples were incubated under dark anaerobic conditions to measure accumulation of fermentation products. Acetate and propionate (ca. 3:1) were the major products to accumulate in a 55°,C mat. Other products accumulated to a much lesser extent. Incubation of mat samples of varying thickness showed that fermentation occurred in the top 4mm of the mat. This has interesting implications for fermentative organisms in the mat due to the diurnal changes in mat oxygen concentrations. Fermentation measured in mat samples collected at various temperatures (50°,-70°C) showed acetate and propionate to be the major accumulation products. According to the interspecies hydrogen transfer model, the hydrogen concentration in a system affects the types of fermentation products produced. At a 65° C site, with natural high hydrogen levels, and at a 55°C site, with active methanogenesis, fermentation product accumulation was compared. There was a greater ratio of reduced fermentation products to acetate, with the exception of propionate, at 65°C. Ethanol accumulated at the 65°C site, as did lactate, though to a lesser extent. -
On Normal Tissue Homeostasis Maintenance of Immune Tolerance
Maintenance of Immune Tolerance Depends on Normal Tissue Homeostasis Zita F. H. M. Boonman, Geertje J. D. van Mierlo, Marieke F. Fransen, Rob J. W. de Keizer, Martine J. Jager, Cornelis J. This information is current as M. Melief and René E. M. Toes of September 27, 2021. J Immunol 2005; 175:4247-4254; ; doi: 10.4049/jimmunol.175.7.4247 http://www.jimmunol.org/content/175/7/4247 Downloaded from References This article cites 48 articles, 21 of which you can access for free at: http://www.jimmunol.org/content/175/7/4247.full#ref-list-1 http://www.jimmunol.org/ Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists • Fast Publication! 4 weeks from acceptance to publication by guest on September 27, 2021 *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2005 by The American Association of Immunologists All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology Maintenance of Immune Tolerance Depends on Normal Tissue Homeostasis Zita F. H. M. Boonman,* Geertje J. D. van Mierlo,† Marieke F. Fransen,† Rob J.