Frontiers in Veterinary Science 7(34)
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Fish and Fishery Products Hazards and Controls Guidance Fourth Edition – APRIL 2011
SGR 129 Fish and Fishery Products Hazards and Controls Guidance Fourth Edition – APRIL 2011 DEPARTMENT OF HEALTH AND HUMAN SERVICES PUBLIC HEALTH SERVICE FOOD AND DRUG ADMINISTRATION CENTER FOR FOOD SAFETY AND APPLIED NUTRITION OFFICE OF FOOD SAFETY Fish and Fishery Products Hazards and Controls Guidance Fourth Edition – April 2011 Additional copies may be purchased from: Florida Sea Grant IFAS - Extension Bookstore University of Florida P.O. Box 110011 Gainesville, FL 32611-0011 (800) 226-1764 Or www.ifasbooks.com Or you may download a copy from: http://www.fda.gov/FoodGuidances You may submit electronic or written comments regarding this guidance at any time. Submit electronic comments to http://www.regulations. gov. Submit written comments to the Division of Dockets Management (HFA-305), Food and Drug Administration, 5630 Fishers Lane, Rm. 1061, Rockville, MD 20852. All comments should be identified with the docket number listed in the notice of availability that publishes in the Federal Register. U.S. Department of Health and Human Services Food and Drug Administration Center for Food Safety and Applied Nutrition (240) 402-2300 April 2011 Table of Contents: Fish and Fishery Products Hazards and Controls Guidance • Guidance for the Industry: Fish and Fishery Products Hazards and Controls Guidance ................................ 1 • CHAPTER 1: General Information .......................................................................................................19 • CHAPTER 2: Conducting a Hazard Analysis and Developing a HACCP Plan -
Changes to Virus Taxonomy 2004
Arch Virol (2005) 150: 189–198 DOI 10.1007/s00705-004-0429-1 Changes to virus taxonomy 2004 M. A. Mayo (ICTV Secretary) Scottish Crop Research Institute, Invergowrie, Dundee, U.K. Received July 30, 2004; accepted September 25, 2004 Published online November 10, 2004 c Springer-Verlag 2004 This note presents a compilation of recent changes to virus taxonomy decided by voting by the ICTV membership following recommendations from the ICTV Executive Committee. The changes are presented in the Table as decisions promoted by the Subcommittees of the EC and are grouped according to the major hosts of the viruses involved. These new taxa will be presented in more detail in the 8th ICTV Report scheduled to be published near the end of 2004 (Fauquet et al., 2004). Fauquet, C.M., Mayo, M.A., Maniloff, J., Desselberger, U., and Ball, L.A. (eds) (2004). Virus Taxonomy, VIIIth Report of the ICTV. Elsevier/Academic Press, London, pp. 1258. Recent changes to virus taxonomy Viruses of vertebrates Family Arenaviridae • Designate Cupixi virus as a species in the genus Arenavirus • Designate Bear Canyon virus as a species in the genus Arenavirus • Designate Allpahuayo virus as a species in the genus Arenavirus Family Birnaviridae • Assign Blotched snakehead virus as an unassigned species in family Birnaviridae Family Circoviridae • Create a new genus (Anellovirus) with Torque teno virus as type species Family Coronaviridae • Recognize a new species Severe acute respiratory syndrome coronavirus in the genus Coro- navirus, family Coronaviridae, order Nidovirales -
Molecular Interaction Between Fish Pathogens and Host Aquatic Animals
K. Tsukamoto, T. Kawamura, T. Takeuchi, T. D. Beard, Jr. and M. J. Kaiser, eds. Fisheries for Global Welfare and Environment, 5th World Fisheries Congress 2008, pp. 277–288. © by TERRAPUB 2008. Molecular Interaction between Fish Pathogens and Host Aquatic Animals Laura L. Brown* and Stewart C. Johnson National Research Council of Canada Institute for Marine Biosciences 1411 Oxford Street Halifax, NS, B3H 3Z1, Canada Present address: Fisheries and Oceans Canada Pacific Biological Station 3190 Hammond Bay Road Nanaimo, NS, V9T 6N7, Canada *E-mail: [email protected] We have studied the host-pathogen interactions between Atlantic salmon (Salmo salar L.) and Aeromonas salmonicida. Sequencing the genome of the bacterium allowed us to investigate virulence factors and other gene products with potential as vaccines. Using knock-out mutants of A. salmonicida, we identified key virulence factors. Proteomics studies of bacterial cells grown in a variety of media as well as in an in vivo implant system revealed differential protein production and have shed new light on bacterial proteins such as superoxide dismutase, pili and flagellar proteins, type three secretion systems, and their roles in A. salmonicida pathogenicity. We constructed a whole ge- nome DNA microarray to use in comparative genomic hybridizations (M-CGH) and bacterial gene expression studies. Carbohydrate analysis has shown the variation in LPS between strains and reveals the importance of LPS in viru- lence. Salmon were challenged with A. salmonicida and tissues were taken to construct suppressive subtractive hybridization libraries to investigate differ- ential host gene expression. We constructed an Atlantic salmon cDNA microarray to investigate the host response to A. -
The DNA Virus Invertebrate Iridescent Virus 6 Is a Target of the Drosophila Rnai Machinery
The DNA virus Invertebrate iridescent virus 6 is a target of the Drosophila RNAi machinery Alfred W. Bronkhorsta,1, Koen W. R. van Cleefa,1, Nicolas Vodovarb,2, Ikbal_ Agah Ince_ c,d,e, Hervé Blancb, Just M. Vlakc, Maria-Carla Salehb,3, and Ronald P. van Rija,3 aDepartment of Medical Microbiology, Nijmegen Centre for Molecular Life Sciences, Nijmegen Institute for Infection, Inflammation, and Immunity, Radboud University Nijmegen Medical Centre, 6500 HB Nijmegen, The Netherlands; bViruses and RNA Interference Group, Institut Pasteur, Centre National de la Recherche Scientifique, Unité de Recherche Associée 3015, 75015 Paris, France; cLaboratory of Virology, Wageningen University, 6708 PB Wageningen, The Netherlands; dDepartment of Genetics and Bioengineering, Yeditepe University, Istanbul 34755, Turkey; and eDepartment of Biosystems Engineering, Faculty of Engineering, Giresun University, Giresun 28100, Turkey Edited by Peter Palese, Mount Sinai School of Medicine, New York, NY, and approved October 19, 2012 (received for review April 28, 2012) RNA viruses in insects are targets of an RNA interference (RNAi)- sequently, are hypersensitive to virus infection and succumb more based antiviral immune response, in which viral replication inter- rapidly than their wild-type (WT) controls (11–14). mediates or viral dsRNA genomes are processed by Dicer-2 (Dcr-2) Small RNA cloning and next-generation sequencing provide into viral small interfering RNAs (vsiRNAs). Whether dsDNA virus detailed insights into vsiRNA biogenesis. In several studies in infections are controlled by the RNAi pathway remains to be insects, the polarity of the vsiRNA population deviates strongly determined. Here, we analyzed the role of RNAi in DNA virus from the highly skewed distribution of positive strand (+) over infection using Drosophila melanogaster infected with Invertebrate negative (−) viral RNAs that is generally observed in (+) RNA iridescent virus 6 (IIV-6) as a model. -
Chemical Pollution of the Oceans Toxic Chemical Pollutants in the Oceans Have Been Shown Capable of Causing a Wide Range of Human Diseases
Supplementary Appendix to “Human Health and Ocean Pollution”, Annals of Global Health, 2020 This Supplementary Appendix contains additional references and documentation supporting the information presented in the report, Human Health and Ocean Pollution. Chemical Pollution of the Oceans Toxic chemical pollutants in the oceans have been shown capable of causing a wide range of human diseases. Toxicological and epidemiological studies document that pollutants such as toxic metals, POPs, dioxins, plastics chemicals, and pesticides can cause cardiovascular effects, developmental and neurobehavioral disorders, metabolic disease, endocrine disruption and cancer. Table 1 in this Supplementary Appendix summarizes the known links between chemical pollutants in the oceans and a range of human health outcomes. The strengths of the associations listed in Table 1 vary depending on the nature of the studies establishing these associations. Some associations have been assessed in systematic reviews and meta-analyses of animal and human data.1 2 Some are single cross-sectional or case-control studies. There are now a growing number of relevant epidemiological studies, including powerful prospective cohort studies, such as the Nurses’ Health Study II and the Prospective Investigation of the Vasculature in Uppsala Seniors (PIVUS)3 Findings from these investigations are strengthening the evidence base for associations between exposures to organic chemical pollutants and adverse health outcomes. Supplementary Appendix Table 1. Adverse Human Health Outcomes -
Common Diseases of Wild and Cultured Fishes in Alaska
COMMON DISEASES OF WILD AND CULTURED FISHES IN ALASKA Theodore Meyers, Tamara Burton, Collette Bentz and Norman Starkey July 2008 Alaska Department of Fish and Game Fish Pathology Laboratories The Alaska Department of Fish and Game printed this publication at a cost of $12.03 in Anchorage, Alaska, USA. 3 About This Booklet This booklet is a product of the Ichthyophonus Diagnostics, Educational and Outreach Program which was initiated and funded by the Yukon River Panel’s Restoration and Enhancement fund and facilitated by the Yukon River Drainage Fisheries Association in conjunction with the Alaska Department of Fish and Game. The original impetus driving the production of this booklet was from a concern that Yukon River fishers were discarding Canadian-origin Chinook salmon believed to be infected by Ichthyophonus. It was decided to develop an educational program that included the creation of a booklet containing photographs and descriptions of frequently encountered parasites within Yukon River fish. This booklet is to serve as a brief illustrated guide that lists many of the common parasitic, infectious, and noninfectious diseases of wild and cultured fish encountered in Alaska. The content is directed towards lay users, as well as fish culturists at aquaculture facilities and field biologists and is not a comprehensive treatise nor should it be considered a scientific document. Interested users of this guide are directed to the listed fish disease references for additional information. Information contained within this booklet is published from the laboratory records of the Alaska Department of Fish and Game, Fish Pathology Section that has regulatory oversight of finfish health in the State of Alaska. -
Ecology and Pathology of Amphibian Ranaviruses
Vol. 87: 243–266, 2009 DISEASES OF AQUATIC ORGANISMS Published December 3 doi: 10.3354/dao02138 Dis Aquat Org OPENPEN ACCESSCCESS REVIEW Ecology and pathology of amphibian ranaviruses Matthew J. Gray1,*, Debra L. Miller1, 2, Jason T. Hoverman1 1274 Ellington Plant Sciences Building, Center for Wildlife Health, Department of Forestry Wildlife and Fisheries, Institute of Agriculture, University of Tennessee, Knoxville, Tennessee 37996-4563, USA 2Veterinary Diagnostic and Investigational Laboratory, College of Veterinary Medicine, University of Georgia, 43 Brighton Road, Tifton, Georgia 31793, USA ABSTRACT: Mass mortality of amphibians has occurred globally since at least the early 1990s from viral pathogens that are members of the genus Ranavirus, family Iridoviridae. The pathogen infects multiple amphibian hosts, larval and adult cohorts, and may persist in herpetofaunal and oste- ichthyan reservoirs. Environmental persistence of ranavirus virions outside a host may be several weeks or longer in aquatic systems. Transmission occurs by indirect and direct routes, and includes exposure to contaminated water or soil, casual or direct contact with infected individuals, and inges- tion of infected tissue during predation, cannibalism, or necrophagy. Some gross lesions include swelling of the limbs or body, erythema, swollen friable livers, and hemorrhage. Susceptible amphi- bians usually die from chronic cell death in multiple organs, which can occur within a few days fol- lowing infection or may take several weeks. Amphibian species differ in their susceptibility to rana- viruses, which may be related to their co-evolutionary history with the pathogen. The occurrence of recent widespread amphibian population die-offs from ranaviruses may be an interaction of sup- pressed and naïve host immunity, anthropogenic stressors, and novel strain introduction. -
Emerging Viral Diseases of Fish and Shrimp Peter J
Emerging viral diseases of fish and shrimp Peter J. Walker, James R. Winton To cite this version: Peter J. Walker, James R. Winton. Emerging viral diseases of fish and shrimp. Veterinary Research, BioMed Central, 2010, 41 (6), 10.1051/vetres/2010022. hal-00903183 HAL Id: hal-00903183 https://hal.archives-ouvertes.fr/hal-00903183 Submitted on 1 Jan 2010 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Vet. Res. (2010) 41:51 www.vetres.org DOI: 10.1051/vetres/2010022 Ó INRA, EDP Sciences, 2010 Review article Emerging viral diseases of fish and shrimp 1 2 Peter J. WALKER *, James R. WINTON 1 CSIRO Livestock Industries, Australian Animal Health Laboratory (AAHL), 5 Portarlington Road, Geelong, Victoria, Australia 2 USGS Western Fisheries Research Center, 6505 NE 65th Street, Seattle, Washington, USA (Received 7 December 2009; accepted 19 April 2010) Abstract – The rise of aquaculture has been one of the most profound changes in global food production of the past 100 years. Driven by population growth, rising demand for seafood and a levelling of production from capture fisheries, the practice of farming aquatic animals has expanded rapidly to become a major global industry. -
NASCO Scientific Working Group
N A S C O NORTH AMERICAN COMMISSION PROTOCOLS FOR THE INTRODUCTION AND TRANSFER OF SALMONIDS by NAC/NASCO Scientific Working Group on Salmonid Introductions and Transfers Edited by T. Rex Porter Canadian Co-chairman Department of Fisheries and Oceans P O Box 5667 St John's, NF A1C 5X1 NAC(92)24 i TABLE OF CONTENTS Page INTRODUCTION ............................................................................................................... 1 PART I SUMMARY OF PROTOCOLS BY ZONE .............................................. 3 1 ZONING OF RIVER SYSTEMS ......................................................................... 5 2 DESCRIPTION OF ZONES ................................................................................. 5 3 PROTOCOLS ......................................................................................................... 6 3.1 Protocols applicable to all three Zones ..................................................... 6 3.2 Protocols applicable to Zone I ................................................................... 7 3.2.1 General within Zone I ................................................................................... 7 3.2.2 Rehabilitation ................................................................................................ 7 3.2.3 Establishment or re-establishment of Atlantic salmon in a river or part of a watershed where there are no salmon ........................................ 7 3.2.4 Aquaculture .................................................................................................. -
Table S5. the Information of the Bacteria Annotated in the Soil Community at Species Level
Table S5. The information of the bacteria annotated in the soil community at species level No. Phylum Class Order Family Genus Species The number of contigs Abundance(%) 1 Firmicutes Bacilli Bacillales Bacillaceae Bacillus Bacillus cereus 1749 5.145782459 2 Bacteroidetes Cytophagia Cytophagales Hymenobacteraceae Hymenobacter Hymenobacter sedentarius 1538 4.52499338 3 Gemmatimonadetes Gemmatimonadetes Gemmatimonadales Gemmatimonadaceae Gemmatirosa Gemmatirosa kalamazoonesis 1020 3.000970902 4 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas indica 797 2.344876284 5 Firmicutes Bacilli Lactobacillales Streptococcaceae Lactococcus Lactococcus piscium 542 1.594633558 6 Actinobacteria Thermoleophilia Solirubrobacterales Conexibacteraceae Conexibacter Conexibacter woesei 471 1.385742446 7 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas taxi 430 1.265115184 8 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas wittichii 388 1.141545794 9 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas sp. FARSPH 298 0.876754244 10 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sorangium cellulosum 260 0.764953367 11 Proteobacteria Deltaproteobacteria Myxococcales Polyangiaceae Sorangium Sphingomonas sp. Cra20 260 0.764953367 12 Proteobacteria Alphaproteobacteria Sphingomonadales Sphingomonadaceae Sphingomonas Sphingomonas panacis 252 0.741416341 -
Cefas PANDA Report
Project no. SSPE-CT-2003-502329 PANDA Permanent network to strengthen expertise on infectious diseases of aquaculture species and scientific advice to EU policy Coordination Action, Scientific support to policies WP4: Report on the current best methods for rapid and accurate detection of the main disease hazards in aquaculture, requirements for improvement, their eventual standardisation and validation, and how to achieve harmonised implementation throughout Europe of the best diagnostic methods Olga Haenen*, Inger Dalsgaard, Jean-Robert Bonami, Jean-Pierre Joly, Niels Olesen, Britt Bang Jensen, Ellen Ariel, Laurence Miossec and Isabelle Arzul Work package leader & corresponding author: Dr Olga Haenen, CIDC-Lelystad, NL ([email protected]) PANDA co-ordinator: Dr Barry Hill, CEFAS, UK; www.europanda.net © PANDA, 2007 Cover image: Koi with Koi Herpes Virus Disease: enophthalmia and gill necrosis (M.Engelsma acknowl.) Contents Executive summary 5 Section 1 Introduction 7 1.1 Description of work 7 1.2 Deliverables 8 1.3 Milestones and expected results 9 1.4 Structure of the report and how to use it 9 1.5 General remarks and links with other WPs of PANDA 9 Section 2 Materials and methods 10 2.1 Task force 10 2.2 Network 10 2.3 Workshops and dissemination 10 2.4 Analysis of data 10 2.5 Why harmonization throughout Europe background and aim 11 2.6. CRL functions 11 Section 3 Results 12 3.1 Task force 12 3.2 Network 12 3.3 Workshops and dissemination 12 3.4 Analysis of data 14 Diseases/pathogens of fish 14 3.4.1 Epizootic haematopoietic necrosis -
Scholars Academic Journal of Biosciences
Scholars Academic Journal of Biosciences Abbreviated Key Title: Sch Acad J Biosci ISSN 2347-9515 (Print) | ISSN 2321-6883 (Online) Zoology Journal homepage: https://saspublishers.com A Comprehensive Review on the Prevalence and Dissemination of Some Bacterial Diseases in Ornamental Fishes and Their Preventive Measures Arnab Chatterjee1#, Sucharita Ghosh2#, Ritwick Bhattacharya1#, Soumendranath Chatterjee2, Nimai Chandra Saha1* 1Fishery and Ecotoxicology Research Laboratory (Vice-Chancellor’s Research Group), Department of Zoology, the University of Burdwan, Burdwan 713104, West Bengal, India 2Parasitology & Microbiology Research Laboratory, Department of Zoology, the University of Burdwan, Burdwan, West Bengal, India #Authors contributed equally DOI: 10.36347/sajb.2020.v08i11.005 | Received: 06.11.2020 | Accepted: 17.11.2020 | Published: 20.11.2020 *Corresponding author: Nimai Chandra Saha Abstract Review Article As a consequential sector within the fisheries segment, ornamental fisheries have become a billion-dollar industry. At current, it is estimated that the aquarium industry is worth about 15 billion dollars. In ornamental aquaculture and aquarium keeping, the incidence of diseases is the main quandary that emerges during culture and deplorably affects the profitability of the ventures. Diseases are caused by viruses, protozoa, bacteria, fungi, and parasites under profound culture conditions, and the likelihood of stress elevates in an immensely colossal portion of the stock. Of these, the most paramount causes of sudden fish death are infectious and bacterial diseases. Nowadays, veterinary antibiotic treatment of contaminated fish is being applied in most of the States of India. Disease obviation is often less costly than treating disease outbreaks when it is subsisting. Adopting and implementing a health management strategy would not assure a disease-free facility that ultimately leads to considerably decremented chances of dissemination of diseases.