Ecology and Pathology of Amphibian Ranaviruses
Total Page:16
File Type:pdf, Size:1020Kb
Load more
Recommended publications
-
Artemia Spp., a Susceptible Host and Vector for Lymphocystis Disease Virus
viruses Article Artemia spp., a Susceptible Host and Vector for Lymphocystis Disease Virus Estefania J. Valverde, Alejandro M. Labella, Juan J. Borrego and Dolores Castro * Departamento de Microbiología, Facultad de Ciencias, Universidad de Málaga, 29017 Málaga, Spain; [email protected] (E.J.V.); [email protected] (A.M.L.); [email protected] (J.J.B.) * Correspondence: [email protected]; Tel.: +34-952134214 Received: 8 May 2019; Accepted: 30 May 2019; Published: 1 June 2019 Abstract: Different developmental stages of Artemia spp. (metanauplii, juveniles and adults) were bath-challenged with two isolates of the Lymphocystis disease virus (LCDV), namely, LCDV SA25 (belonging to the species Lymphocystis disease virus 3) and ATCC VR-342 (an unclassified member of the genus Lymphocystivirus). Viral quantification and gene expression were analyzed by qPCR at different times post-inoculation (pi). In addition, infectious titres were determined at 8 dpi by integrated cell culture (ICC)-RT-PCR, an assay that detects viral mRNA in inoculated cell cultures. In LCDV-challenged Artemia, the viral load increased by 2–3 orders of magnitude (depending on developmental stage and viral isolate) during the first 8–12 dpi, with viral titres up to 2.3 102 × Most Probable Number of Infectious Units (MPNIU)/mg. Viral transcripts were detected in the infected Artemia, relative expression values showed a similar temporal evolution in the different experimental groups. Moreover, gilthead seabream (Sparus aurata) fingerlings were challenged by feeding on LCDV-infected metanauplii. Although no Lymphocystis symptoms were observed in the fish, the number of viral DNA copies was significantly higher at the end of the experimental trial and major capsid protein (mcp) gene expression was consistently detected. -
Long-Term Monitoring of the Endemic Rana Latastei: Suggestions for After-LIFE Management
Long-term monitoring of the endemic Rana latastei: suggestions for after-LIFE management L UCA C ANOVA and A LESSANDRO B ALESTRIERI Abstract We monitored egg clutch numbers of a popula- loss (Houlahan & Findlay, ; Cushman, ), pollution tion of the endemic Italian agile frog Rana latastei in a (Bridges & Semlitsch, ), disease epidemics and climate Site of Community Interest in northern Italy (SCI IT change (Kiesecker et al., ; Ficetola & Maiorano, ). ) during – with the aim of assessing the As for many other taxa (Menzel et al., ; Thackeray long-term variation in its abundance. We walked along et al., ; Chen et al., ), a shift to earlier breeding as the banks of canals and small ponds (n = ) – times per a result of global warming has been reported for several week between early February and mid-April each year to anuran species (Terhivuo, ; Reading, ; Corn, ; detect egg clutches. The relationships between the start of Tryjanovski et al., ). Shifts are stronger for anurans than the breeding season, yearly egg mass counts, rate of yearly those reported for trees, birds and butterflies (Parmesan, change in the number of recorded egg masses and climat- ), but the consequences of earlier breeding for popula- ic and environmental variables were assessed by multiple re- tion dynamics are still unknown. gression. The first deposition of eggs occurred progressively Neither phenological shifts (Blaustein et al., ), nor later in the year throughout the study period and mean air population decline (Blaustein et al., ; Richter et al., temperature during the breeding season decreased over this ; Stuart et al., ) affect all amphibian populations. period. Agile frogs showed high deposition site-fidelity. -
Amphibian Abundance and Detection Trends During a Large Flood in a Semi-Arid Floodplain Wetland
Herpetological Conservation and Biology 11:408–425. Submitted: 26 January 2016; Accepted: 2 September 2016; Published: 16 December 2016. Amphibian Abundance and Detection Trends During a Large Flood in a Semi-Arid Floodplain Wetland Joanne F. Ocock1,4, Richard T. Kingsford1, Trent D. Penman2, and Jodi J.L. Rowley1,3 1Centre for Ecosystem Science, School of Biological, Earth and Environmental Sciences, UNSW Australia, Sydney, New South Wales, 2052, Australia 2Centre for Environmental Risk Management of Bushfires, Institute of Conservation Biology and Environmental Management, University of Wollongong, Wollongong, New South Wales 2522, Australia 3Australian Museum Research Institute, Australian Museum, 6 College St, Sydney, New South Wales 2010, Australia 4Corresponding author, email: [email protected] Abstract.—Amphibian abundance and occupancy are often reduced in regulated river systems near dams, but com- paratively little is known about how they are affected on floodplain wetlands downstream or the effects of actively managed flows. We assessed frog diversity in the Macquarie Marshes, a semi-arid floodplain wetland of conserva- tion significance, identifying environmental variables that might explain abundances and detection of species. We collected relative abundance data of 15 amphibian species at 30 sites over four months, coinciding with a large natural flood. We observed an average of 39.9 ± (SE) 4.3 (range, 0-246) individuals per site survey, over 47 survey nights. Three non-burrowing, ground-dwelling species were most abundant at temporarily flooded sites with low- growing aquatic vegetation (e.g., Limnodynastes tasmaniensis, Limnodynastes fletcheri, Crinia parinsignifera). Most arboreal species (e.g., Litoria caerulea) were more abundant in wooded habitat, regardless of water permanency. -
A Herpetofaunal Survey of the Santee National Wildlife Refuge Submitted
A Herpetofaunal Survey of the Santee National Wildlife Refuge Submitted to the U.S. Fish and Wildlife Service October 5, 2012 Prepared by: Stephen H. Bennett Wade Kalinowsky South Carolina Department of Natural Resources Introduction The lack of baseline inventory data of herpetofauna on the Santee National Wildlife Refuge, in general and the Dingle Pond Unit specifically has proven problematic in trying to assess priority species of concern and direct overall management needs in this system. Dingle Pond is a Carolina Bay which potentially provides unique habitat for many priority reptiles and amphibians including the federally threatened flatwoods salamander, the state endangered gopher frog, state threatened dwarf siren and spotted turtle and several species of conservation concern including the tiger salamander, upland chorus frog (coastal plain populations only), northern cricket frog (coastal plain populations only), many-lined salamander, glossy crayfish snake and black swamp snake. The presence or abundance of these and other priority species in this large Carolina Bay is not known. This project will provide for funds for South Carolina DNR to conduct baseline surveys to census and assess the status of the herpetofauna in and adjacent to the Dingle Pond Carolina Bay. Surveys will involve a variety of sampling techniques including funnel traps, hoop traps, cover boards, netting and call count surveys to identify herpetofauna diversity and abundance. Herpetofauna are particularly vulnerable to habitat changes including climate change and human development activities. Many unique species are endemic to Carolina Bays, a priority habitat that has been greatly diminished across the coastal plain of South Carolina. These species can serve as indicator species of habitat quality and climate changes and baseline data is critical at both the local and regional level. -
Changes to Virus Taxonomy 2004
Arch Virol (2005) 150: 189–198 DOI 10.1007/s00705-004-0429-1 Changes to virus taxonomy 2004 M. A. Mayo (ICTV Secretary) Scottish Crop Research Institute, Invergowrie, Dundee, U.K. Received July 30, 2004; accepted September 25, 2004 Published online November 10, 2004 c Springer-Verlag 2004 This note presents a compilation of recent changes to virus taxonomy decided by voting by the ICTV membership following recommendations from the ICTV Executive Committee. The changes are presented in the Table as decisions promoted by the Subcommittees of the EC and are grouped according to the major hosts of the viruses involved. These new taxa will be presented in more detail in the 8th ICTV Report scheduled to be published near the end of 2004 (Fauquet et al., 2004). Fauquet, C.M., Mayo, M.A., Maniloff, J., Desselberger, U., and Ball, L.A. (eds) (2004). Virus Taxonomy, VIIIth Report of the ICTV. Elsevier/Academic Press, London, pp. 1258. Recent changes to virus taxonomy Viruses of vertebrates Family Arenaviridae • Designate Cupixi virus as a species in the genus Arenavirus • Designate Bear Canyon virus as a species in the genus Arenavirus • Designate Allpahuayo virus as a species in the genus Arenavirus Family Birnaviridae • Assign Blotched snakehead virus as an unassigned species in family Birnaviridae Family Circoviridae • Create a new genus (Anellovirus) with Torque teno virus as type species Family Coronaviridae • Recognize a new species Severe acute respiratory syndrome coronavirus in the genus Coro- navirus, family Coronaviridae, order Nidovirales -
United States Patent (19) 11 Patent Number: 5,030,200 Judy Et Al
United States Patent (19) 11 Patent Number: 5,030,200 Judy et al. (45) Date of Patent: "Jul. 9, 1991 54 METHOD FOR ERADICATING INFECTIOUS 4,708,715 11/1987 Troutner et al. ....................... 604/6 BIOLOGICAL CONTAMINANTS IN BODY 4,878,891 1 1/1989 Judy et al. .............................. 604/5 TISSUES Primary Examiner-Stephen C. Pellegrino (75) Inventors: Millard M. Judy; James L. Matthews; Assistant Examiner-Michael Rafa Joseph T. Newman; Franklin Attorney, Agent, or Firm-Johnson & Gibbs Sogandares-Bernal, all of Dallas, Tex. (57) ABSTRACT (73) Assignee: Baylor Research Foundation, Dallas, A method for externally eradicating infectious patho Tex. genic contaminants, such as enveloped viruses, bacteria, * Notice: The portion of the term of this patent trypanosomal and malarial parasites, present in body subsequent to Nov. 7, 2006 has been tissues, such as blood, blood components, semen, skin, disclaimed. and cornea, before the treated body tissues are intro 21) Appl. No.: 433,024 duced into, or transplanted onto, the body of a human or an animal. Such method includes the steps of: (1) 22) Filed: Nov. 6, 1989 admixing an effective, non-toxic amount of photoactive compound, which has a selectively for binding to the Related U.S. Application Data infectious pathogenic biological contaminants present (63) Continuation-in-part of Ser. No. 67,237, Jun. 25, 1987, therein, with the body tissues outside the body to pro Pat. No. 4,878,891. duce resulting body tissues; (2) maintaining the resulting 51 Int. Cl.............................................. A61M 37/00 body tissues in a suitable container in which there is no (52) U.S. -
Environment and Communications Legislation Committee Answers to Questions on Notice Environment Portfolio
Senate Standing Committee on Environment and Communications Legislation Committee Answers to questions on notice Environment portfolio Question No: 3 Hearing: Additional Estimates Outcome: Outcome 1 Programme: Biodiversity Conservation Division (BCD) Topic: Threatened Species Commissioner Hansard Page: N/A Question Date: 24 February 2016 Question Type: Written Senator Waters asked: The department has noted that more than $131 million has been committed to projects in support of threatened species – identifying 273 Green Army Projects, 88 20 Million Trees projects, 92 Landcare Grants (http://www.environment.gov.au/system/files/resources/3be28db4-0b66-4aef-9991- 2a2f83d4ab22/files/tsc-report-dec2015.pdf) 1. Can the department provide an itemised list of these projects, including title, location, description and amount funded? Answer: Please refer to below table for itemised lists of projects addressing threatened species outcomes, including title, location, description and amount funded. INFORMATION ON PROJECTS WITH THREATENED SPECIES OUTCOMES The following projects were identified by the funding applicant as having threatened species outcomes and were assessed against the criteria for the respective programme round. Funding is for a broad range of activities, not only threatened species conservation activities. Figures provided for the Green Army are approximate and are calculated on the 2015-16 indexed figure of $176,732. Some of the funding is provided in partnership with State & Territory Governments. Additional projects may be approved under the Natinoal Environmental Science programme and the Nest to Ocean turtle Protection Programme up to the value of the programme allocation These project lists reflect projects and funding originally approved. Not all projects will proceed to completion. -
Wildlife Habitat Plan
WILDLIFE HABITAT PLAN City of Novi, Michigan A QUALITY OF LIFE FOR THE 21ST CENTURY WILDLIFE HABITAT PLAN City of Novi, Michigan A QUALIlY OF LIFE FOR THE 21ST CENTURY JUNE 1993 Prepared By: Wildlife Management Services Brandon M. Rogers and Associates, P.C. JCK & Associates, Inc. ii ACKNOWLEDGEMENTS City Council Matthew C. Ouinn, Mayor Hugh C. Crawford, Mayor ProTem Nancy C. Cassis Carol A. Mason Tim Pope Robert D. Schmid Joseph G. Toth Planning Commission Kathleen S. McLallen, * Chairman John P. Balagna, Vice Chairman lodia Richards, Secretary Richard J. Clark Glen Bonaventura Laura J. lorenzo* Robert Mitzel* Timothy Gilberg Robert Taub City Manager Edward F. Kriewall Director of Planning and Community Development James R. Wahl Planning Consultant Team Wildlife Management Services - 640 Starkweather Plymouth, MI. 48170 Kevin Clark, Urban Wildlife Specialist Adrienne Kral, Wildlife Biologist Ashley long, Field Research Assistant Brandon M. Rogers and Associates, P.C. - 20490 Harper Ave. Harper Woods, MI. 48225 Unda C. lemke, RlA, ASLA JCK & Associates, Inc. - 45650 Grand River Ave. Novi, MI. 48374 Susan Tepatti, Water Resources Specialist * Participated with the Planning Consultant Team in developing the study. iii TABLE OF CONTENTS ACKNOWLEDGEMENTS iii PREFACE vii EXECUTIVE SUMMARY viii FRAGMENTATION OF NATURAL RESOURCES " ., , 1 Consequences ............................................ .. 1 Effects Of Forest Fragmentation 2 Edges 2 Reduction of habitat 2 SPECIES SAMPLING TECHNIQUES ................................ .. 3 Methodology 3 Survey Targets ............................................ ., 6 Ranking System ., , 7 Core Reserves . .. 7 Wildlife Movement Corridor .............................. .. 9 FIELD SURVEY RESULTS AND RECOMMENDATIONS , 9 Analysis Results ................................ .. 9 Core Reserves . .. 9 Findings and Recommendations , 9 WALLED LAKE CORE RESERVE - DETAILED STUDy.... .. .... .. .... .. 19 Results and Recommendations ............................... .. 21 GUIDELINES TO ECOLOGICAL LANDSCAPE PLANNING AND WILDLIFE CONSERVATION. -
A Novel Family of Large Cationic Proteins That Condense Viral Genomic DNA for Encapsidation
biology Communication Ascovirus P64 Homologs: A Novel Family of Large Cationic Proteins That Condense Viral Genomic DNA for Encapsidation Dennis K. Bideshi 1,2,* , Tatsinda Spears 3, Heba A. H. Zaghloul 3, Yeping Tan 2, Yves Bigot 4 and Brian A. Federici 2,3 1 Department of Biological Sciences, California Baptist University, Magnolia Avenue, Riverside, CA 92504, USA 2 Department of Entomology, University of California, Riverside, CA 92521, USA; [email protected] (Y.T.); [email protected] (B.A.F.) 3 Graduate Program in Cell, Molecular and Developmental Biology, and Microbiology, University of California, Riverside, CA 92521, USA; [email protected] (T.S.); [email protected] (H.A.H.Z.) 4 UMR CNRS7247, Centre INRA Val de Loire, 37380 Nouzilly, France; [email protected] * Correspondence: [email protected]; Tel.: +1-951-343-4397 Received: 9 August 2018; Accepted: 7 September 2018; Published: 11 September 2018 Abstract: Eukaryotic dsDNA viruses use small basic protamine-like proteins or histones, typically <15 kDa, to condense and encapsidate their genomic (g)DNAs during virogenesis. Ascoviruses are large dsDNA (~100–200 kbp) viruses that are pathogenic to lepidopteran larvae. Little is known about the molecular basis for condensation and encapsidation of their gDNAs. Previous proteomic analysis showed that Spodoptera frugiperda ascovirus (SfAV-1a) virions contain a large unique DNA-binding protein (P64; 64 kDa, pI = 12.2) with a novel architecture proposed to condense its gDNA. Here we used physical, biochemical, and transmission electron microscopy techniques to demonstrate that P64’s basic C-terminal domain condenses SfAV-1a gDNA. Moreover, we demonstrate that only P64 homologs in other ascovirus virions are unique in stably binding DNA. -
First Record of Theloderma Lateriticum Bain, Nguyen Et Doan, 2009 (Anura Rhacophoridae) from China with Redescribed Morphology
Biodiversity Journal, 2019, 10 (1): 25–36 https://doi.org/10.31396/Biodiv.Jour.2019.10.1.25.36 First record of Theloderma lateriticum Bain, Nguyen et Doan, 2009 (Anura Rhacophoridae) from China with redescribed morphology Weicai Chen1,2*, Xiaowen Liao3, Shichu Zhou3 & Yunming Mo3 1Key Laboratory of Beibu Gulf Environment Change and Resources Utilization of Ministry of Education, Nanning Normal University, Nanning 530001, China 2Guangxi Key Laboratory of Earth Surface Processes and Intelligent Simulation, Nanning Normal University, Nanning 530001, China 3Natural History Museum of Guangxi, Nanning 530012, China *Corresponding author, e-mail: [email protected] ABSTRACT Theloderma lateriticum Bain, Nguyen et Doan, 2009 (Anura Rhacophoridae) is recorded for the first time outside of Vietnam. The new locality record is from Shiwandashan National Nature Reserve, southern Guangxi, China, adjoining to Vietnam. We complemented and im- proved the morphological characters, including tadpole’s morphology and advertisement calls. KEY WORDS Theloderma lateriticum; new national record; distribution; southern China. Received 26.01.2019; accepted 05.03.2019; published online 28.03.2019 INTRODUCTION these specimens displayed high genetic variation, ranging from 0.5 to 4.9 based on combined se- Theloderma lateriticum Bain, Nguyen et quences of 12S rRNA, tRNAval, and 16S rRNA Doan, 2009 (Anura Rhacophoridae) was de- yielded a total of 2412 bp positions (Nguyen et scribed based on a single specimen (Voucher no. al., 2015). AMNH 168757/IEBR A. 0860, adult male). The In 2017, we carried out the monitoring of am- type locality is the Hoang Lien Mountains, Lao phibians at Shiwandashan National Nature Cai Province, northwestern Vietnam, between Reserve, Guangxi, China (21.844043° - N, 107. -
The DNA Virus Invertebrate Iridescent Virus 6 Is a Target of the Drosophila Rnai Machinery
The DNA virus Invertebrate iridescent virus 6 is a target of the Drosophila RNAi machinery Alfred W. Bronkhorsta,1, Koen W. R. van Cleefa,1, Nicolas Vodovarb,2, Ikbal_ Agah Ince_ c,d,e, Hervé Blancb, Just M. Vlakc, Maria-Carla Salehb,3, and Ronald P. van Rija,3 aDepartment of Medical Microbiology, Nijmegen Centre for Molecular Life Sciences, Nijmegen Institute for Infection, Inflammation, and Immunity, Radboud University Nijmegen Medical Centre, 6500 HB Nijmegen, The Netherlands; bViruses and RNA Interference Group, Institut Pasteur, Centre National de la Recherche Scientifique, Unité de Recherche Associée 3015, 75015 Paris, France; cLaboratory of Virology, Wageningen University, 6708 PB Wageningen, The Netherlands; dDepartment of Genetics and Bioengineering, Yeditepe University, Istanbul 34755, Turkey; and eDepartment of Biosystems Engineering, Faculty of Engineering, Giresun University, Giresun 28100, Turkey Edited by Peter Palese, Mount Sinai School of Medicine, New York, NY, and approved October 19, 2012 (received for review April 28, 2012) RNA viruses in insects are targets of an RNA interference (RNAi)- sequently, are hypersensitive to virus infection and succumb more based antiviral immune response, in which viral replication inter- rapidly than their wild-type (WT) controls (11–14). mediates or viral dsRNA genomes are processed by Dicer-2 (Dcr-2) Small RNA cloning and next-generation sequencing provide into viral small interfering RNAs (vsiRNAs). Whether dsDNA virus detailed insights into vsiRNA biogenesis. In several studies in infections are controlled by the RNAi pathway remains to be insects, the polarity of the vsiRNA population deviates strongly determined. Here, we analyzed the role of RNAi in DNA virus from the highly skewed distribution of positive strand (+) over infection using Drosophila melanogaster infected with Invertebrate negative (−) viral RNAs that is generally observed in (+) RNA iridescent virus 6 (IIV-6) as a model. -
Summary Report of Freshwater Nonindigenous Aquatic Species in U.S
Summary Report of Freshwater Nonindigenous Aquatic Species in U.S. Fish and Wildlife Service Region 4—An Update April 2013 Prepared by: Pam L. Fuller, Amy J. Benson, and Matthew J. Cannister U.S. Geological Survey Southeast Ecological Science Center Gainesville, Florida Prepared for: U.S. Fish and Wildlife Service Southeast Region Atlanta, Georgia Cover Photos: Silver Carp, Hypophthalmichthys molitrix – Auburn University Giant Applesnail, Pomacea maculata – David Knott Straightedge Crayfish, Procambarus hayi – U.S. Forest Service i Table of Contents Table of Contents ...................................................................................................................................... ii List of Figures ............................................................................................................................................ v List of Tables ............................................................................................................................................ vi INTRODUCTION ............................................................................................................................................. 1 Overview of Region 4 Introductions Since 2000 ....................................................................................... 1 Format of Species Accounts ...................................................................................................................... 2 Explanation of Maps ................................................................................................................................