Figure 7.7 Maxium Clade Credibility Chronogram of the ITS Dataset

Total Page:16

File Type:pdf, Size:1020Kb

Figure 7.7 Maxium Clade Credibility Chronogram of the ITS Dataset Madagascar Labramia costata 7 Labramia louvelii I Labramia mayottensis Labramia ankaranaensis Labourdonnaisia calophylloides Labourdonnaisia revoluta 11 Faucherea manongarivensis K Labourdonnaisia madagascariensis Faucherea thouvenotii 31 J Faucherea sp Faucherea parvifolia Asia 16 Manilkara udoido L Manilkara dissecta Manilkara fasciculata Manilkara letouzei 36 H 10 Manilkara bequaertii Figure 7.7 Maxium clade credibility chronogram of the ITS dataset derived from an analysis in BEAST T3 Manilkara suarezensis Africa/Madagascar Manilkara boivinii using the GTR+I+G model and a relaxed clock for all three partitions, calibrated with the SapMim fossil Manilkara perrieri T1 Manilkara capuronii scenario. Dashed lines indicate branches which lead to nodes with a posterior probability of <0.95. Mean Manilkara zenkeri Manilkara obovata (multinervis type) ages are given for profiled nodes and node bars indicate 95% HPD age ranges. Lettered nodes are Manilkara lososiana discussed in the text. Starred nodes indicate the placement of the Sapotaceae and Mimusopeae (SapMim) Manilkara pelligriniana 17 Letestua durissima fossils (Table 7.1). Lineages are colored according to their distribution: Yellow = Africa, Green = Mada- T Manilkara fouilloyana Manilkara mabokeensis gascar, Blue = Asia, Pink = South America, Orange = Central America & the Caribbean. Geological Manilkara welwitschii epochs are indicated in a scale at the bottom of the chronogram. Tribal and subtribal classification is Manilkara koechlinii 36 Manilkara sp.1 represented to the right of the chronogram. Outgroups have been reduced to grey bars at the base of the Manilkara sansibarensis Manilkara T2 Manilkara discolor Subtribe chronogram. Age ranges of all profiled nodes are detailed in Appendix 7.2. 30 Φ Manilkara dawei 5 Manilkara obovata (butugi type) T4 Manilkara sahafarensis Manilkara cuneifolia Tribe Manilkara hoshinoi (a) Manilkara vitiensis Asia U2 Manilkara smithiana 25 Manilkara kauki U Manilkara hoshinoi (b) Manilkara sp. 2 Manilkarinaesensu Manilkara littoralis Mimusopeae U1 Manilkara hexandra Manilkara triflora Central/South 42 Manilkara staminodella Δ P1 Manilkara zapota 16 Manilkara mayarensis stricto 33 P Manilkara sideroxylon M 21 P3 N Manilkara chicle P2 Manilkara pleeana Manilkara jamiqui Manilkara gonavensis Manilkara valenzuelana Manilkara salzmannii 19 N1 Manilkara elata Manilkara maxima Manilkara rufula O1 27 Manilkara decrescens America Ψ1 Manilkara bella Manilkara subsericea 14 Manilkara cavalcantei O Manilkara longifolia Manilkara huberi 29 Manilkara paraensis 46 Ψ C Manilkara bidentata (a) O2 Manilkara inundata Manilkara bidentata (b) 6 Manilkara mochisia (a) R Manilkara concolor Africa/Madagascar 9 Manilkara obovata (obovata type) (b) S Manilkara lacera 33 Tieghemella heckelii G Autranella congolensis Mimusops kummel Mimusopinae 39 Mimusops zeyheri Γ F3 Mimusops caffra F2 Mimusops comorensis Z 25 Mimusops elengi F Mimusops obovata Mimusops coriacea Mimusops sp F1 Mimusops perrieri Mimusops membranacea Vitellaria paradoxa 35 D Baillonella toxisperma 30 Vitellariopsis dispar Vitellariopsis cuneata E Vitellariopsis marginata Vitellariopsis kirkii Outgroups Isonandreae Capurodendron androyense Northia seychellana 102 Xantolis/Englerophytum 62 B 115 Sideroxyleae A Eberhardtia tonkinensis Eberhardtia aurata Sarcosperma laurinum 115 110 105 100 95 90 85 80 75 70 65 60 55 50 45 40 35 30 25 20 15 10 5 0 MYA Cretaceous Paleocene Eocene Oligocene Miocene Plio Ple 147 .
Recommended publications
  • (Pouteria Sapota, Sapotaceae) from Southeastern Mexico: Its Putative Domestication Center
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by DigitalCommons@University of Nebraska University of Nebraska - Lincoln DigitalCommons@University of Nebraska - Lincoln U.S. Department of Agriculture: Agricultural Publications from USDA-ARS / UNL Faculty Research Service, Lincoln, Nebraska 7-6-2019 Structure and genetic diversity in wild and cultivated populations of Zapote mamey (Pouteria sapota, Sapotaceae) from southeastern Mexico: its putative domestication center Jaime Martínez-Castillo Centro de Investigación Científica de ucatánY (CICY), [email protected] Nassib H. Blancarte-Jasso Centro de Investigación Científica de ucatánY (CICY) Gabriel Chepe-Cruz Centro de Investigación Científica de ucatánY (CICY) Noemí G. Nah-Chan Centro de Investigación Científica de ucatánY (CICY) Matilde M. Ortiz-García Centro de Investigación Científica de ucatánY (CICY) See next page for additional authors Follow this and additional works at: https://digitalcommons.unl.edu/usdaarsfacpub Martínez-Castillo, Jaime; Blancarte-Jasso, Nassib H.; Chepe-Cruz, Gabriel; Nah-Chan, Noemí G.; Ortiz- García, Matilde M.; and Arias, Renee S., "Structure and genetic diversity in wild and cultivated populations of Zapote mamey (Pouteria sapota, Sapotaceae) from southeastern Mexico: its putative domestication center" (2019). Publications from USDA-ARS / UNL Faculty. 2200. https://digitalcommons.unl.edu/usdaarsfacpub/2200 This Article is brought to you for free and open access by the U.S. Department of Agriculture: Agricultural Research Service, Lincoln, Nebraska at DigitalCommons@University of Nebraska - Lincoln. It has been accepted for inclusion in Publications from USDA-ARS / UNL Faculty by an authorized administrator of DigitalCommons@University of Nebraska - Lincoln. Authors Jaime Martínez-Castillo, Nassib H.
    [Show full text]
  • ZAPOTE the Popular Name Represents Many Diverse Edible Fruits of Guatemala
    Sacred Animals and Exotic Tropical Plants monzón sofía photo: by Dr. Nicholas M. Hellmuth and Daniela Da’Costa Franco, FLAAR Reports ZAPOTE The popular name represents many diverse edible fruits of Guatemala ne of the tree fruits raised by the Most zapotes have a soft fruit inside and Maya long ago that is still enjoyed a “zapote brown” covering outside (except today is the zapote. Although for a few that have other external colors). It Othere are several fruits of the same name, the is typical for Spanish nomenclature of fruits popular nomenclature is pure chaos. Some of and flowers to be totally confusing. Zapote is the “zapote” fruits belong to the sapotaceae a vestige of the Nahuatl (Aztec) word tzapotl. family and all are native to Mesoamerica. The first plant on our list, Manilkara But other botanically unrelated fruits are also zapote, is commonly named chicozapote. called zapote/sapote; some are barely edible This is one of the most appreciated edible (such as the zapotón). There are probably species because of its commercial value. It even other zapote-named fruits that are not is distributed from the southeast of Mexico, all native to Mesoamerica. especially the Yucatán Peninsula into Belize 60 Dining ❬ ANTIGUA and the Petén area, where it is occasionally now collecting pertinent information related an abundant tree in the forest. The principal to the eating habits of Maya people, and all products of these trees are the fruit; the the plants they used and how they used them latex, which is used as the basis of natural for food.
    [Show full text]
  • Fruit Bats As Natural Foragers and Potential Pollinators in Fruit Orchard: a Reproductive Phenological Study
    Journal of Agricultural Research, Development, Extension and Technology, 25(1), 1-9 (2019) Full Paper Fruit bats as natural foragers and potential pollinators in fruit orchard: a reproductive phenological study Camelle Jane D. Bacordo, Ruffa Mae M. Marfil and John Aries G. Tabora Department of Biological Sciences, College of Arts and Sciences, University of Southern Mindanao, Kabacan, Cotabato, Philippines Received: 27 February 2019 Accepted: 10 June 2019 Abstract Family Pteropodidae could consume either fruit or flower parts to sustain their energy requirement. In some species of fruit bats, population growth is sometimes dependent on the food availability and in return bats could be pollinators of certain species of plants. In this study, 152 female bats captured from the Manilkara zapota orchard of the University of Southern Mindanao were examined for their reproductive stages. Lactation of fruit bat species Ptenochirus jagori and Ptenochirus minor were positively correlated with the fruiting of M. zapota. While the lactation of Cynopterus brachyotis, Eonycteris spelaea and Rousettus amplexicaudatus were positively associated with the flowering of M. zapota. Together, thirty M. zapota trees were observed for their generative stage (fruiting or flowering) in 6 months. Based on the canonical correspondence analysis, only P. jagori was considered as the natural forager as its lactating stage coincides with the fruiting peaks and only C. brachyotis and E. spelaea were the potential pollinators since its lactating stage coincides with the flowering peaks ofM. zapota tree. The method in this study can be used to identify potential pollinators and foragers in other fruit trees. Keywords - agroforest, chiropterophily, frugivore, nocturnal, Sapotaceae Introduction pollination process is called chiropterophily.
    [Show full text]
  • Complete Index of Common Names: Supplement to Tropical Timbers of the World (AH 607)
    Complete Index of Common Names: Supplement to Tropical Timbers of the World (AH 607) by Nancy Ross Preface Since it was published in 1984, Tropical Timbers of the World has proven to be an extremely valuable reference to the properties and uses of tropical woods. It has been particularly valuable for the selection of species for specific products and as a reference for properties information that is important to effective pro- cessing and utilization of several hundred of the most commercially important tropical wood timbers. If a user of the book has only a common or trade name for a species and wishes to know its properties, the user must use the index of common names beginning on page 451. However, most tropical timbers have numerous common or trade names, depending upon the major region or local area of growth; furthermore, different species may be know by the same common name. Herein lies a minor weakness in Tropical Timbers of the World. The index generally contains only the one or two most frequently used common or trade names. If the common name known to the user is not one of those listed in the index, finding the species in the text is impossible other than by searching the book page by page. This process is too laborious to be practical because some species have 20 or more common names. This supplement provides a complete index of common or trade names. This index will prevent a user from erroneously concluding that the book does not contain a specific species because the common name known to the user does not happen to be in the existing index.
    [Show full text]
  • Bark Medicines Used in Traditional Healthcare in Kwazulu-Natal, South Africa: an Inventory
    View metadata, citation and similar papers at core.ac.uk brought to you by CORE provided by Elsevier - Publisher Connector South African Journal of Botany 2003, 69(3): 301–363 Copyright © NISC Pty Ltd Printed in South Africa — All rights reserved SOUTH AFRICAN JOURNAL OF BOTANY ISSN 0254–6299 Bark medicines used in traditional healthcare in KwaZulu-Natal, South Africa: An inventory OM Grace1, HDV Prendergast2, AK Jäger3 and J van Staden1* 1 Research Centre for Plant Growth and Development, School of Botany and Zoology, University of Natal Pietermaritzburg, Private Bag X01, Scottsville 3209, South Africa 2 Centre for Economic Botany, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AE, United Kingdom 3 Department of Medicinal Chemistry, Royal Danish School of Pharmacy, 2 Universitetsparken, 2100 Copenhagen 0, Denmark * Corresponding author, e-mail: [email protected] Received 13 June 2002, accepted in revised form 14 March 2003 Bark is an important source of medicine in South Overlapping vernacular names recorded in the literature African traditional healthcare but is poorly documented. indicated that it may be unreliable in local plant identifi- From thorough surveys of the popular ethnobotanical cations. Most (43%) bark medicines were documented literature, and other less widely available sources, 174 for the treatment of internal ailments. Sixteen percent of species (spanning 108 genera and 50 families) used for species were classed in threatened conservation cate- their bark in KwaZulu-Natal, were inventoried. gories, but conservation and management data were Vernacular names, morphological and phytochemical limited or absent from a further 62%. There is a need for properties, usage and conservation data were captured research and specialist publications to address the in a database that aimed to synthesise published infor- gaps in existing knowledge of medicinal bark species mation of such species.
    [Show full text]
  • Collecting Sapotes ( Pouteria Spp.), Sapodilla (Manilkara Zapota ) And
    Collecting Sapotes (Pouteria spp.), Sapodilla (Manilkara zapota) and Caimito (Chrysophyllum cainito) on the Pacific Coast of Costa Rica and Nicaragua Richard J. Campbell, Ph.D. Senior Curator of Tropical Fruit Gary Zill, Juan Carlos Herrera Campo Verde de la Familia, Costa Rica Caimito, Chrysophyllum cainito Sapodilla, Manilkara zapota Sapotes, Pouteria spp. Local markets, subsistence and small farmers, key in local economies and regional stability. Potential: Fresh fruit, products, local to international appeal, novel new markets. Obstacles: Genetic confusion, horticultural improvement, clonal material. Primary collections along Pacific Coast of Central America. Collections in home gardens with local collaborators working closely within the community. P.fossicola P.viridis P.sapota Tropical Fruit Program of the Center for Tropical Plant Conservation Core Genetic Collections ­ Williams Grove, The Redland, Florida, USA October, 2005 Mamey sapote Pouteria sapota Selection Origin Alejas Yucatan Amarillo Guapiles Costa Rica Anaranjado Dominican Republic Arbolito Dominican Republic Buena Vista Belize Celso 2 Yucatan Celso 3 Yucatan Cepeda Especial Yucatan Chico Guapiles Costa Rica Danny Belize Don Vicente Yucatan Felipe Mayo Yucatan Gilberto Costa Rica Kampong (P. viridis) Florida Grande (P. viridis) Guatemala K­40 Costa Rica Lara Florida Lobo Costa Rica Lopez Florida Poamoho (P. viridis) Hawaii Lopez 2 Florida Redondo Antigua (P. viridis) Guatemala Lorito Yucatan Tazumal Florida Magana El Salvador Christmas Florida Marin Yucatan Vidal Yucatan
    [Show full text]
  • Redalyc.Tree and Tree-Like Species of Mexico: Apocynaceae, Cactaceae
    Revista Mexicana de Biodiversidad ISSN: 1870-3453 [email protected] Universidad Nacional Autónoma de México México Ricker, Martin; Valencia-Avalos, Susana; Hernández, Héctor M.; Gómez-Hinostrosa, Carlos; Martínez-Salas, Esteban M.; Alvarado-Cárdenas, Leonardo O.; Wallnöfer, Bruno; Ramos, Clara H.; Mendoza, Pilar E. Tree and tree-like species of Mexico: Apocynaceae, Cactaceae, Ebenaceae, Fagaceae, and Sapotaceae Revista Mexicana de Biodiversidad, vol. 87, núm. 4, diciembre, 2016, pp. 1189-1202 Universidad Nacional Autónoma de México Distrito Federal, México Available in: http://www.redalyc.org/articulo.oa?id=42548632003 How to cite Complete issue Scientific Information System More information about this article Network of Scientific Journals from Latin America, the Caribbean, Spain and Portugal Journal's homepage in redalyc.org Non-profit academic project, developed under the open access initiative Available online at www.sciencedirect.com Revista Mexicana de Biodiversidad Revista Mexicana de Biodiversidad 87 (2016) 1189–1202 www.ib.unam.mx/revista/ Taxonomy and systematics Tree and tree-like species of Mexico: Apocynaceae, Cactaceae, Ebenaceae, Fagaceae, and Sapotaceae Especies arbóreas y arborescentes de México: Apocynaceae, Cactaceae, Ebenaceae, Fagaceae y Sapotaceae a,∗ b a a Martin Ricker , Susana Valencia-Avalos , Héctor M. Hernández , Carlos Gómez-Hinostrosa , a b c Esteban M. Martínez-Salas , Leonardo O. Alvarado-Cárdenas , Bruno Wallnöfer , a a Clara H. Ramos , Pilar E. Mendoza a Herbario Nacional de México (MEXU), Departamento
    [Show full text]
  • Ecosystem Services Provided by Bats
    Ann. N.Y. Acad. Sci. ISSN 0077-8923 ANNALS OF THE NEW YORK ACADEMY OF SCIENCES Issue: The Year in Ecology and Conservation Biology Ecosystem services provided by bats Thomas H. Kunz,1 Elizabeth Braun de Torrez,1 Dana Bauer,2 Tatyana Lobova,3 and Theodore H. Fleming4 1Center for Ecology and Conservation Biology, Department of Biology, Boston University, Boston, Massachusetts. 2Department of Geography, Boston University, Boston, Massachusetts. 3Department of Biology, Old Dominion University, Norfolk, Virginia. 4Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, Arizona Address for correspondence: Thomas H. Kunz, Ph.D., Center for Ecology and Conservation Biology, Department of Biology, Boston University, Boston, MA 02215. [email protected] Ecosystem services are the benefits obtained from the environment that increase human well-being. Economic valuation is conducted by measuring the human welfare gains or losses that result from changes in the provision of ecosystem services. Bats have long been postulated to play important roles in arthropod suppression, seed dispersal, and pollination; however, only recently have these ecosystem services begun to be thoroughly evaluated. Here, we review the available literature on the ecological and economic impact of ecosystem services provided by bats. We describe dietary preferences, foraging behaviors, adaptations, and phylogenetic histories of insectivorous, frugivorous, and nectarivorous bats worldwide in the context of their respective ecosystem services. For each trophic ensemble, we discuss the consequences of these ecological interactions on both natural and agricultural systems. Throughout this review, we highlight the research needed to fully determine the ecosystem services in question. Finally, we provide a comprehensive overview of economic valuation of ecosystem services.
    [Show full text]
  • Accounting for Variation of Substitution Rates Through Time in Bayesian Phylogeny Reconstruction of Sapotoideae (Sapotaceae)
    Molecular Phylogenetics and Evolution 39 (2006) 706–721 www.elsevier.com/locate/ympev Accounting for variation of substitution rates through time in Bayesian phylogeny reconstruction of Sapotoideae (Sapotaceae) Jenny E.E. Smedmark ¤, Ulf Swenson, Arne A. Anderberg Department of Phanerogamic Botany, Swedish Museum of Natural History, P.O. Box 50007, SE-104 05 Stockholm, Sweden Received 9 September 2005; revised 4 January 2006; accepted 12 January 2006 Available online 21 February 2006 Abstract We used Bayesian phylogenetic analysis of 5 kb of chloroplast DNA data from 68 Sapotaceae species to clarify phylogenetic relation- ships within Sapotoideae, one of the two major clades within Sapotaceae. Variation in substitution rates through time was shown to be a very important aspect of molecular evolution for this data set. Relative rates tests indicated that changes in overall rate have taken place in several lineages during the history of the group and Bayes factors strongly supported a covarion model, which allows the rate of a site to vary over time, over commonly used models that only allow rates to vary across sites. Rate variation over time was actually found to be a more important model component than rate variation across sites. The covarion model was originally developed for coding gene sequences and has so far only been tested for this type of data. The fact that it performed so well with the present data set, consisting mainly of data from noncoding spacer regions, suggests that it deserves a wider consideration in model based phylogenetic inference. Repeatability of phylogenetic results was very diYcult to obtain with the more parameter rich models, and analyses with identical settings often supported diVerent topologies.
    [Show full text]
  • Impacts of Invasive Alien Species on Island Ecosystems of India with Special Reference to Andaman Group of Islands - National Biodiversity Authority, Chennai
    Authors S. Sandilyan, B. Meenakumari, A. Biju Kumar & Karthikeyan Vasudevan Citation Sandilyan, S., Meenakumari, B., Biju Kumar, A. and Karthikeyan Vasude- van. 2018. Impacts of invasive alien species on island ecosystems of India with special reference to Andaman group of islands - National Biodiversity Authority, Chennai. Corresponding Author Sandilyan, S. <[email protected]> Copyright @ National Biodiversity Authority, Chennai. ISBN No.: 978-81-932753-5-1 Published by Centre for Biodiversity Policy and Law (CEBPOL) National Biodiversity Authority 5th Floor, TICEL Biopark, CSIR Road, Taramani Chennai 600 113, Tamil Nadu Website: www.nbaindia.org/cebpol Layout and Design: N.Singaram Information Technology Executive, CEBPOL Disclaimer: This publications is prepared as an initiative under CEBPOL programme. All the views expressed in this publication are based on established legal principles. Any error or lapse is purely unintended and inconsequential and shall not make either the NBA or the CEBPOL liable for the same. Some pictures and images included in this publication are sourced from public domain. This publications is purely for non-commercial purposes including awareness creation and capacity building. Contents I. Introduction ............................................................................................ 1 II. Introduction to Islands .......................................................................... 5 a. Biological Importance of Islands .................................................. 8 b. Indian Islands
    [Show full text]
  • Manilkara Zapota (L.) P.Royen (Sapodilla): a Review
    Bano Mehnaz, Ahmed Bilal, International Journal of Advance Research, Ideas and Innovations in Technology. ISSN: 2454-132X Impact factor: 4.295 (Volume 3, Issue 6) Available online at www.ijariit.com Manilkara zapota (L.) P.Royen (Sapodilla): A Review Mehnaz Bano Bilal Ahmed Department of Botany Department of Botany University of Jammu, Jammu and Kashmir University of Jammu, Jammu and Kashmir [email protected] [email protected] Abstract: Manilkara zapota, also known as Sapodilla, is very commonly distributed in Indian subcontinent. It is an important member of Sapotaceae family as it is well known all over the world for its traditional medicinal uses. Numerous phytoconstituents have been reported from the plant by different authors that are responsible for many biological effects such as anti-inflammatory, anti-arthritis, anti-bacterial, anti-fungal, anti-oxidant, anti-tumor and anti-diabetic activities. The present article describes a detailed review of literature for this plant species including taxonomy, pharmacology and photochemistry in an organized way. This review paper will surely serve as an important source for the future scientific investigations on this plant. Keywords: Sapodilla, Phytoconstituents, Anti-tumor, Anti-diabetic, Pharmacology. INTRODUCTION We have been endowed by nature with a marvellous flora and fauna which had beautified our life. Manilkara zapota (L.) P. Royen, commonly known as Sapodilla, chickoo or sapota, one of the wonders of nature belongs to family Sapotaceae including about 65 genera and 800 species [1]. The name Sapodilla is taken from the Spanish word zapotilla which means sapote (a soft edible fruit) [2]. Being a very popular fruit crop, grows well in tropical conditions and cultivated world over in tropical countries for various benefits like edible fruits, timber, latex, etc [2].
    [Show full text]
  • Woody and Herbaceous Plants Native to Haiti for Use in Miami-Dade Landscapes1
    Woody and Herbaceous Plants Native to Haiti For use in Miami-Dade Landscapes1 Haiti occupies the western one third of the island of Hispaniola with the Dominican Republic the remainder. Of all the islands within the Caribbean basin Hispaniola possesses the most varied flora after that of Cuba. The plants contained in this review have been recorded as native to Haiti, though some may now have been extirpated due in large part to severe deforestation. Less than 1.5% of the country’s original tree-cover remains. Haiti’s future is critically tied to re- forestation; loss of tree cover has been so profound that exotic fast growing trees, rather than native species, are being used to halt soil erosion and lessen the risk of mudslides. For more information concerning Haiti’s ecological plight consult references at the end of this document. For present purposes all of the trees listed below are native to Haiti, which is why non-natives such as mango (the most widely planted tree) and other important trees such as citrus, kassod tree (Senna siamea) and lead tree (Leucanea leucocephala) are not included. The latter two trees are among the fast growing species used for re-forestation. The Smithsonian National Museum of Natural History’s Flora of the West Indies was an invaluable tool in assessing the range of plants native to Haiti. Not surprisingly many of the listed trees and shrubs 1 John McLaughlin Ph.D. U.F./Miami-Dade County Extension Office, Homestead, FL 33030 Page | 1 are found in other parts of the Caribbean with some also native to South Florida.
    [Show full text]