<<

GENERAL  ARTICLE from Fischer to Now

N R Krishnaswamy

The story of carbohydrate chemistry from its embryonic stage to the present day high profile research bridging and the life sciences is like a fascinating travelogue through space and time. In this brief article, this intriguing field of natural products chemistry is presented with appro- priate illustrations, with the hope that it will kindle further

N R Krishnaswamy interest in the young readers to whom this is primarily ad- was initiated into the dressed. We begin our journey with and quickly world of natural products traverse some areas of classical and modern organic chemis- by T R Seshadri at try. In the process we come across some familiar landmarks University of Delhi and has carried on the glorious as well as visit a few exotic places before ending on the borders traditions of his mentor. of biology. Beyond this is a region full of promise inviting He has taught at further exploration. Bangalore University, Calicut University and Introduction Sri Sathya Sai Institute of Higher Learning. Among organic compounds the most well known, even to lay- men, are the , produced by plants. Green leaves produce using atmospheric carbon dioxide and water with the help of chlorophyll and sunlight. Several of glucose are then condensed together to form , which serves as a structural material, and which acts as a source of food.

Glucose, , cellulose and starch are household names even if the common man may not know that glucose is a constituent of

Keywords the other three, two of which are polymers! Within this group, one Carbohydrates, , comes across a wide range of molecular sizes (from monomers to Fischer–Kiliani synthesis, cyclo- oligomers to polymers), and shapes. The predominant functional , end-group analysis, group is the hydroxyl, several of which occur in a carbohydrate. , glycosidation reaction, glycocode and glyco- Another key functional group is the carbonyl group, which plays therapy. a pivotal role in the chemical behavior of carbohydrates.

620 RESONANCE July 2011 GENERAL  ARTICLE

Emil Fischer and his students were responsible for elucidating the The synthesis of structures and of the . The syn- glucose achieved by thesis of glucose achieved by them in 1890 is considered as one of Fischer and his the important milestones in the development of organic chemis- students in 1890 is try. This was preceded by the discovery of phenyl hydrazine by considered as one of Fischer in 1875. He used this reagent to explore the chemistry of the important glucose and related compounds. In the course of these studies, milestones in the Fischer developed the mode of molecular representation now development of known as the Fischer projection formula. organic chemistry. This was preceded With the discovery of complex oligosaccharides and polysaccha- by the discovery of rides of natural origin, the focus shifted to the biological impor- phenyl hydrazine by tance of these compounds. Secrets of this aspect of the carbohy- Fischer in 1875. drates are being gradually revealed and active research to unravel the role of carbohydrates in living organisms is in progress. For example, it is now known that in eukaryotic organisms, oligosac- charides occurring as conjugates with proteins and lipids on cell surfaces have a key role in cellular communications.

For the elucidation of the structures of such complex oligosaccha- rides, classical conventional chemical methods proved inad- equate. Progress in this area became possible only after instru- mental methods such as GC-MS and NMR became more powerful and effective as a consequence of advances in these techniques. For confirmation of the structures thus deduced it also became imperative to develop synthetic methods similar to those used for the synthesis of polypeptides. In the following paragraphs, these developments beginning with the pioneering It is now known that in eukaryotic studies of Fischer and others and culminating in present day research, are briefly described organisms, oligosaccharides Classification occurring as conjugates with Carbohydrates are primarily classified according to their molecu- proteins and lipids lar size. Monosaccharides are monomers. The most important on cell surfaces member of this group is glucose, which is an aldohexose as it has have a key role in six carbon , five hydroxyl groups (one primary and the other cellular four secondary) and an aldehyde function at one end, as in the communications.

RESONANCE  July 2011 621 GENERAL  ARTICLE

Oligosaccharides are Fischer representation. , which is an isomer of glucose, made up of two or has a keto carbonyl function and is known as a ketohexose. more Monosaccharides having fewer carbon atoms are also known. For units; for example, example, and are aldopentoses, that is, they are , such C5 compounds with an aldehyde group and four hydroxyls. as sucrose, Oligosaccharides are made up of two or more monosaccharide and , are units; for example, disaccharides, such as sucrose, lactose and hydrolysable to yield maltose, are hydrolysable to yield two monosaccharide units. In two monosaccharide the case of sucrose, the monomers obtained are glucose and units. fructose. , which can be isolated from molasses, is a trisaccharide. This compound on yields one each of glucose, , another aldohexose, and fructose. As already mentioned, cellulose and starch are , being polymeric compounds. Another example of a polysaccha- ride is , commonly known as animal starch.

Carbohydrates which do not conform to the general formula

Cn(H2O)m include deoxy and amino sugars. Monosaccharides

The optical activity exhibited by (+)-glucose was first observed by Biot in the year 1817. Two years earlier he had recorded that sucrose was optically active. However, the stereochemistry of glucoseand other monosaccharides remained obscureuntil Fischer began his pioneering studies. The molecular formula, formation of a pentaacetate and reduction of Tollen’s reagent established that glucose is a pentahydroxy aldehyde having six carbon atoms. The presence of the aldehyde group could be confirmed by Glucose cyanohydrin, oxidation with bromine water, the product being gluconic acid. on hydrolysis followed Glucose cyanohydrin, on hydrolysis followed by reduction with by reduction with hydriodic acid gave n-heptanoic acid showing that glucose is a hydriodic acid gave n- straight-chain aldohexose. On catalytic hydrogenation over a heptanoic acid nickel catalyst glucose yielded glucitol or sorbitol, which is showing that glucose 1,2,3,4,5,6-hexahydroxyhexane. However, structure (1) that is a straight-chain emerged from the above mentioned reactions. could not account aldohexose. for all the known properties of glucose. On the basis of structure

622 RESONANCE July 2011 GENERAL  ARTICLE

(1), which has only historical significance, for glucose, gluconic One property which acid can be formulated as (2) and glucitol as (3). could not be explained by structure (1) is the CHO COOH CH2OH mutarotation exhibited (CHOH)4 (CHOH) (CHOH) 4 4 by aqueous solutions CH2OH CH OH CH OH 2 2 of glucose. A thorough 1 2 3 investigation of this phenomenon, One property which could not be explained by structure (1) is the discovered by mutarotation exhibited by aqueous solutions of glucose. The Dubrunfaut, showed initial specific rotation of ordinary glucose in water is [] = D that all mono- +112°. However, it changes over a period of time and finally saccharides exhibit reaches the value of +52.3°. A thorough investigation of this this property phenomenon, discovered by Dubrunfaut, showed that all monosac- charides exhibit this property which could be attributed to the existence of two stereoisomers which are interconvertible. These were designated as - and - forms. To account for this phenom- enon, Tollens suggested a five-membered cyclic oxide structure (cyclic hemiacetal) (4) for glucose involving the aldehyde group at position 1 and the hydroxyl at position 4. However, when Tollens made this proposition in 1883, there was no experimental evidence available to support it. Only 12 years later, Tanret could provide this crucial evidence by isolating the two forms of (+)- glucose. Several years later, as a result of the studies of Haworth and others, the ring structure of (+)-glucose was corrected to a six-membered cyclic hemiacetal structure (5), which incorpo- rates the correct configurations at all the chiral centres, which had earlier been determined by Fischer and his coworkers. In this 1 Haworth projection1 formula, the hydroxyl group at position 1, Haworth Projection: The mode of two-dimensional repre- which is known as the anomeric carbon , is on the top in the sentation of the cyclic structures -form, whereas it is oriented downwards in the -form, as of molecules is known as shown in 6 and 7 respectively. the Haworth projection, and was developed by Sir Walter . The method devel- CH OH CH2OH CH OH HO 2 2 oped by him for the preparation O H OH H O O O OH OH OH of methyl ethers of sugars using H CHOH-CH2OH OH dimethyl sulphate was an im- HO H OH HO OH OH OH OH OH OH portant early step in structural 4 5 6 7 studies on carbohydrates.

RESONANCE  July 2011 623 GENERAL  ARTICLE

Fischer used the As mentioned above, prior to this development, Fischer and his Kiliani synthesis to coworkers had elucidated the stereochemistry of glucose and convert an other aldohexoses in a series of exquisitely planned and elegantly into its next higher executed experiments. Fischer used the Kiliani synthesis2 to homologue. convert an aldose into its next higher homologue. For example, if an aldopentose having the Fischer structure (8) is treated with

2 Kiliani Synthesis: This syn- HCN it will yield two isomeric cyanohydrins (9) and (10). These thesis, named after Heinrich are separately hydrolysed and the resulting carboxylic acid lac- Kiliani and Emil Fischer, begins tones reduced with sodium amalgam to obtain two epimeric with an aldose whose cyanohy- aldohexoses, (11) and (12). drin is converted into the corre- sponding aldonic lactone. The latter is finally reduced to obtain CN CN CHO CHO the next higher aldose. The origi- CHO H OH HO H H OH HO H nal procedure has undergone H OH H OH H OH H OH H OH several modifications in order to H OH H OH H OH H OH H OH improve the yield of the final H OH H OH H OH H OH H OH product. CH OH 2 CH2OH CH2OH CH2OH CH2OH 8 9 10 11 12

This reaction was effectively used by Fischer in his studies on glucose and its stereoisomers. Since the Fischer structure has four Fischer showed that asymmetric carbon atoms, 16 possible configurations, represent- by using the Kiliani ing eight pairs of enantiomers, are possible. For one set of synthesis the aldohexoses, designated as D-aldohexoses, the possible struc- aldopentose (-)- tures are 11 to 18, one of them being the structure of D-(+)- arabinose could be glucose. Fischer showed that by using the Kiliani synthesis the converted into a aldopentose (-)-arabinose could be converted into a mixture of mixture of (+)-glucose (+)-glucose and (+)-. Therefore, the first problem was to and (+)-mannose. The establish the configuration of D-(-)-arabinose and this was done first problem was to using oxidation reactions and optical activity measurements. establish the Thereby, (-)- arabinose was shown to have the structure (19). The configuration of D-(-)- structure 8 given in the previous paragraph is that of D-ribose. It arabinose and this follows, therefore, that (+)-glucose and (+)-mannose should be was done using 13 and 14 or vice versa. Further experiments proved that D-(+)- oxidation reactions glucose is indeed 13. and optical activity measurements.

624 RESONANCE July 2011 GENERAL  ARTICLE

CHO CHO CHO CHO CHO CHO H OH HO H H OH HO H H OH HO H CHO HO H HO H H OH H OH HO H HO H HO H H OH H OH HO H HO H HO H HO H H OH H OH H OH H OH H OH H OH H OH H OH

CH2OH CH2OH CH2OH CH2OH CH2OH CH2OH CH2OH 19 13 14 15 16 17 18

The Haworth representation is also not perfect in the sense that it does not reflect the correct conformation of the six-membered cyclic hemiacetal ring. Being analogous to cyclohexane, this ring D-Glucosamine or 2- can also assume several conformations of which the chair form is amino-2-deoxy-D- the most stable. Therefore, D-(+)--glucose should be correctly glucopyranose (22) is represented as 20 and its - as 21. an important member of the group HOH C classified as modified HOH2C 2 O O monosaccharides. Its HO HO HO OH HO N-acetyl derivative is OH OH 20 21 OH the sole constituent of the D-Glucosamine or 2-amino-2-deoxy-D-glucopyranose (22) is an , important member of the group classified as modified monosac- , which occurs charides. Its N-acetyl derivative is the sole constituent of the in the shell of the polysaccharide, chitin, which occurs in the shell of the lobster, the lobster, the cockroach and also in plants. cockroach and also in plants. Modified monosaccharides also include deoxy sugars such as L- (23), which is 6-deoxy-L-mannopyranose, quinovose (24) (6-deoxy-D-glucopyranose) and L- (25), which is 6- deoxy-L-galactopyranose.

OH OH H C HOH C 3 2 H C O O O 3 O HO H3C OH HO OH OH HO HO HO OH OH OH NH 24 HO 25 22 2 23 OH

RESONANCE  July 2011 625 GENERAL  ARTICLE

The best known Disaccharides is The best known disaccharide is sucrose or cane sugar. As men- sucrose or cane sugar. Glucose tioned earlier, on hydrolysis it gives one molecule each of D-(+)- glucose and D-(-)-fructose. Since it does not reduce Tollen’s and fructose are combined through reagent or react with phenylhydrazine, it is evident that it does not have a free carbonyl group. Nor does it exhibit mutarotation. their anomeric carbon atoms that Therefore, it is obvious that glucose and fructose are combined through their anomeric carbon atoms that are C-1 of glucose and are C-1 of glucose and C-2 of C-2 of fructose as shown in structure 26. This linkage is known as the bond. The configuration at the anomeric carbon fructose as shown in structure 26. atom of the glucose unit is -, whereas that at the corresponding position in the fructose part is .

HOH2C HO OH O OH O HO HOH2C OH O HO O HO O OH OH HO O OH CH OH OH 2 27 26 HO

In contrast to sucrose, (+)-lactose, which is the milk sugar, reduces Tollen’s reagent, exhibits mutarotation and reacts with phenylhydrazine to form an osazone derivative. On acidic or enzymatic hydrolysis (brought about by the action of emulsin which specifically cleaves - glycosidic linkages), one molecule each of D-(+)-glucose and D-(+)-galactose are obtained. The observation that lactosazone on hydrolysis gives galactose and glucosazone shows that in lactose, the glucose unit retains its anomeric hydroxyl group. Further experiments involving methy- lation followed by hydrolysis show that the anomeric carbon atom (C-1) of galactose is linked through an oxide bond to C-4 of glucose as shown in 27.

Maltose (28) and (29) are both diglucosides, each being made of two glucose units. Both are reducing sugars. In Maltose (28) and both the compounds, C-1 of one glucose unit is linked to C-4 of cellobiose (29) are the other unit through an oxide bond. The only difference is the both diglucosides, configuration of the glucosidic bond; in maltose it is -, whereas each being made of in cellobiose it is . Maltose forms the structural unit of starch, two glucose units. while cellobiose has a similar function in cellulose.

626 RESONANCE July 2011 GENERAL  ARTICLE

The antibiotic, HOH2C O HOH2C HOH2C HO O O streptomycin (30), can HO HO O HOH2C OH OH O HO HO be considered as a O OH OH HO OH 29 trisaccharide. The 28 OH human milk is a Higher Oligosaccharides source of some complex The antibiotic, streptomycin (30), can be considered as a trisac- oligosaccharides charide. The human milk is a source of some complex oligosac- which possess an charides which possess an immunostimulising effect. One of immunostimulising these is the trisaccharide, L-fucosyllactose (31). effect. One of these is the trisaccharide, HN L-fucosyllactose (31). NH2 HN HO OH H OH N HN OH O HO OH NH O O 2 CHO O HO O H3C HO OH O HO O OH HO H3C O OH O NHCH HO 3 OH OH HO 31 30

Cyclodextrins

These cyclic oligosaccharides are produced when starch is acted upon by amylolytic enzymes present in Bacillus macerans and other microorganisms. -Cyclodextrin is made up of six glucose units linked together by -glycosidic bonds. The - and -forms -Cyclodextrin is contain 7 and 8 glucose units respectively. The exterior surface of made up of six these cyclodextrins is hydrophilic, whereas the interior space is glucose units linked hydrophobic. In one possible arrangement of -cyclodextrin together by hendecahydrate, the hydroxyl group on C-2 of a glucose unit is -glycosidic bonds. involved in hydrogen bonding with the hydroxyl on C-3 of the The - and -forms neighbouring glucose moiety as shown in structure 32. The contain 7 and 8 partners involved in this type of intramolecular hydrogen bond- glucose units ing, designated as flip-flop hydrogen bonding, keep changing, respectively. resulting in a stabilized structure which is continuously in a

RESONANCE  July 2011 627 GENERAL  ARTICLE

3 The Diels–Alder Reaction: rocking mode. The interior space is large enough to accommo- Among the many name reac- date a variety of other molecules to form inclusion complexes. tions used for the synthesis of a wide variety of naturally occur- This property has been exploited to facilitate a wide range of 3 ring organic compounds, the reactions. For example, in a Diels–Alder reaction between Diels–Alder reaction occupies a cyclopentadiene and acrylonitrile, the addition of -cyclodextrin prime place by virtue of being a increases the rate of the reaction by several orders compared to regio- and stereo-specific reac- tion. It was first developed in the rate in the usual organic solvents. This is the consequence of 1928 by the German , the cyclodextrin molecule gathering the two reactants inside its and Kurt Alder. It is a cavity and of the rocking motion mentioned above which facili- cycloadditon reaction involving tate interactions between the diene and the dienophile. This a diene and a dienophile and comes under the category of reaction is not catalysed by -cyclodextrin which shows that the pericylic reactions. Orbital sym- size of the internal cavity is a crucial factor. metry rules have been applied to elucidate the mechanism of HO H this reaction. O O O OH HO HO O OH O O HO HO O HO OH O n OH OH HO O O n = 2,  O OH HO n = 3,  Cyclodextrins n = 4,  32

Polysaccharides

Among polysaccharides the best known are cellulose, starch and chitin. As mentioned earlier, the monomeric unit in both cellulose and starch is D-glucose but the glucosidic bond in cellulose is  The best known and in starch it is . Apart from this important difference, polysaccharides are cellulose and starch differ from each other in several other cellulose, starch and respects. In cellulose, where the disaccharide unit is cellobiose, chitin. The several molecules of the latter combine in a linear manner to form monomeric unit in the polymer. Further, parallel strands of the polysaccharide thus both cellulose and formed link together by hydrogen bonding. The resulting rope- starch is D-glucose like structure makes cellulose a strong structural material. but the glucosidic bond in cellulose is  Starch, on the other hand, is not a homogeneous substance; it can and in starch it is . be separated into the water-soluble and water-insoluble

628 RESONANCE July 2011 GENERAL  ARTICLE . Amylose is a polymer of maltose. On the basis of Starch, on the other end group analysis and physical methods it has been estimated hand, is not a that 1000 to 4000 glucose molecules are linked together through homogeneous 1,4--glucosidic bonds to form an amylose molecule. Physical substance. On the methods indicate a higher molecular weight than that given by basis of end group chemical end group analysis showing that in the latter process analysis and physical some amount of degradation is occurring. The fully formed methods it has been polymeric structure assumes a spiral, spring-like form in which estimated that 1000 iodine molecules, for example, get entrapped and form a blue- to 4000 glucose coloured complex. molecules are linked together through 1,4- Amylopectin is also made up of maltose units, but unlike amy- -glucosidic bonds to lose, there are several cross linking bonds between these units, form an amylose making its overall structure much more complex. The resulting molecule. highly branched structure is responsible for its insolubility in water.

Chitin is a polymer of N-acetylglucosamine. Its structure is very similar to that of cellulose. Like the latter, it is resistant to solvents. It can however be broken down by the enzyme chitinase which occurs in the intestinal tract of snails.

N-acetylglucosamine is a constituent of the biologically impor- tant polysaccharide, hyaluronic acid which functions as a lubri- cant and shock absorber in animal joints. The other monosaccha- ride unit in this polysaccharide is -D-glucuronic acid. The repeat unit in this is a disaccharide acid in which the anomeric carbon of a glucuronic acid unit is glycosidically linked to position 3 of N-acetylglucosamine, the anomeric carbon atom of which, in turn, is linked to position 4 of the neighbouring glucu- ronic acid moiety, as shown in the partial structure 33.

HOH2C HOH2C HO2C Chitin is a polymer HO2C O O HO O O HO O O O of N-acetyl- HO O HO OH NHCOCH3 OH NHCOCH3 glucosamine. Its 33 structure is very Chondroitin sulphates, A, B and C, are the main polysaccharides similar to that of present in mammalian connective tissues and cartilage. These cellulose.

RESONANCE  July 2011 629 GENERAL  ARTICLE

Chondroitin compounds are chemically related to hyaluronic acid with the sulphates, A, B and following differences. In place of N-acetylglucosamine, N- C, are the main acetylgalactosamine (2-acetamido-2-deoxy-D-galactose) is one polysaccharides of the monosaccharide units in these compounds. Further, the present in hydroxyl at position 4 of each N-acetylgalactosamine moiety is mammalian esterified with sulphuric acid (see partial structure 34). The connective tissues anticoagulant, heparin (35), which occurs in the liver, heart and and cartilage. other tissues, is also chemically related to thechondroitin sulphates. Its constituents are glucosamine and glucuronic acid in the ratio 1:1. Within each repeat disaccharide unit, there are two O- sulphate and one N-sulphate groups as shown in structure 35.

OH OH HO3SO HO3SO HO2C HO2C O O O O O O O HO O HO OH OH NHCOCH3 NHCOCH3 34

OSO3H O O HO2C O HO O O HO3SHN HO OSO3H 35

Using a 750 MHz Determination of Structures of Complex Oligo- and Poly- NMR instrument, with saccharides multiple (as many as With the introduction of methylation analysis in the 1970s, it 32) scans, the became possible to determine the structures of complex oligosac- structure of an charides isolated from bacterial sources. The value of this tech- nique was enhanced when advanced physical techniques were consisting of 22 used in tandem. For example, using a 750 MHz NMR instrument, monosaccharide with multiple (as many as 32) scans, the structure of an oligosac- units, isolated from charide consisting of 22 monosaccharide units, isolated from Salmonella enterica Salmonella enterica ssp Typhimurium 1135 LPS could be com- ssp Typhimurium pletely elucidated using just 2 mg of the compound. Even less 1135 LPS could be quantity (0.14 mg) was sufficient to record a 550 MHz NMR completelyelucidated spectrum using a nanoprobe. Both 1H and 13C NMR spectral data using just 2 mg of the are extensively used in these studies. compound.

630 RESONANCE July 2011 GENERAL  ARTICLE

Synthesis of Oligosaccharides The variables in a oligosaccharide As already mentioned, the variables in a oligosaccharide struc- structure are the ture are the number of monomeric units, the points of attachment number of monomeric of the different components, the configuration of the glycosidic units, the points of linkages and also the ring size ( or ) of the attachment of the monomeric units. All these factors together make the synthesis different components, of an oligosaccharide a challenging task, demanding a high the configuration of the degree of regio- as well as stereoselectivity. The strategy used is glycosidic linkages and similar to that used in polypeptide synthesis. For example, the also the ring size use of selective protective groups plays a vital role. As in peptide (pyranose or furanose) synthesis, the current trend is to assemble an oligosaccharide of the monomeric units. sequence on a solid support. A decade ago, the first automated All these factors solid phase synthesis of an oligosaccharide was effected. Since together make the then, several innovations have been introduced with the result synthesis of an that a complex nonasaccharide antigen found on tumour cells oligosaccharide a could be synthesised within a day. challenging task.

Whatever the strategy, the most important single step involved in the synthesis of an oligosaccharide is the reaction, in which two sugar units are linked through an acetal bond. The key to success in this reaction is the nature of the leaving group on the anomeric carbon atom of a sugar molecule. In the classical era, the leaving groups most widely used were bromide, chloride and methoxide groups. More effective leaving groups are the thioether, the phosphate and the trichloroacetimidate groups. The reagent used for introducing the last mentioned group is trichloroacetonitrile. In Scheme 1, a regiospecific formation of a Scheme 1. Preparation of diglucoside in which the anomeric carbon atom of one glucose disaccharide.

34 OPG OPG OPG OPG O O O HO O Activating OPG PG OP G PG O PG + PG agent PG PG LG PG PG PG PG NH O

PG = Protecting group; LG = Leaving group: Cl; Br; OCH3; OC2H5; O C CCl ; O P OC4H9 3 _ O

RESONANCE  July 2011 631 GENERAL  ARTICLE

4 One-Pot Method: The strat- moiety is linked to position 3 of the other is shown, where PGs are egy of bringing about a multi- protective groups and LGs are leaving groups. A wide range of step synthesis of an organic compound in one reaction ves- protective groups have been used for selective protection of the sel is known as one-pot synthe- various hydroxyl groups. These include the acetyl, benzyl, allyl sis. By doing so, time-consum- and 4-nitrobenzoyl groups, among others. Several steps, usually ing separations and lengthy not less than five, are needed to prepare an appropriately pro- work-up procedures are elimi- nated and the final desired prod- tected monosaccharide. A number of these derivatives are now uct is obtained in quicker time available. One solid support commonly used in oligosaccharide and better yields as compared synthesis is polyethyleneglycol -monomethyl ether (MPEG) to conventional procedures. For attached to ,’-dioxyxylyl diether (DOX). example, 7-hydroxycoumarin-3- carboxylic acid has been pre- pared in an aqueous medium As an alternative to traditional organic synthetic methods, spe- from 2,4-dihydroxybenzalde- cific enzymes have been used to build oligosaccharides. These hyde and malononitrile (see F enzymes, known as glycosyl transferases, act on nucleotide Fringuelli et al, J.Chem.Ed., Vol.81, p.874, 2004). diphospho sugars in aqueous media to produce complex oligosac- charides without the need for any protective functionalities.

One-pot methods4 have been developed, for example using thioglycosides as building blocks to prepare oligosaccharide chains from the non-reducing end to the reducing end. Using this technique a library of linear as well as branched oligosaccharides has been prepared.

A synthesis of a 1,6-linked di-D-glucoside as well as that of a 1,6- linked di-D-mannoside, involving some of the principles men- tioned above, are given in Scheme 2. These two examples are chosen to illustrate a solid-phase synthesis and a solution-phase synthesis using different protecting and leaving groups.

Before leaving this topic of synthesis of oligosaccharides and the glycosylation reaction, it is pertinent to mention about the devel- opment of a glycosylation reaction using unprotected glycosyl donors. This reaction discovered by Hanessian and his coworkers involves the use of specially designed anomeric leaving groups. One example is given in Scheme 3.

632 RESONANCE July 2011 GENERAL  ARTICLE

CH 3 CH3 HOH2C HO 1.CH OH, HCl AcOH2C OCH O 3 AcO AcOH C O 3 1.NaOCH OCH3 HO O 1. HBr 2 3 BnOH2C O AcO O HO 2. (CH CO) O AcO O O O 3 2 AcO 2. 2,2,6-Lutidine 2.PhCH Br / BnO AcO 2 BnO D-Mannose OH NaH OCH3 BnOH2C AcO O BnOH2C AcO BnO 1. CH CO H O Me SiOSO CF / BnO Deprotection 3 2 BnO 3 2 3 Finalproduct BnO 2. (NH4)2CO3 O CCl3 BnOH2C O 3. Cl3C-CN O O O NH BnO O BnO BnO BnO O O

ArCOOH C ArCOOH2C 2 HOH2C O O NaOC2H5 O BnO BnO BnO HO BnO Br BnO BnO OBn OBn O OBn O Ar = 4-NO2-Ph-

ArCOOH2C O ArCOOH2C BnO O BnO BnO Br BnO OBn Deprotection O Final product OBn O ; (CH ) S O 3 3 2 BnO BnO

OBn O

Scheme 2 (top). Prepara-

HOH2C O O tion of 1,6-linked disaccha- HO HO NH rides. HOH2C H 3C O Uridine O OH HO diphosphate O N O HO O O OH N Scheme 3 (bottom). Glyco- sylation using a special OH OH leaving group.

Carbohydrates as Chirons

By virtue of possessing several asymmetric centres with defined configurations, sugar derivatives can be used as chirons in the asymmetric synthesis of a variety of natural products. We shall describe here only a couple of illustrative examples. A versatile C-3 chiron is 2,3-O-isopropylideneglyceraldehyde. Both enanti- omers of this compound, namely, the D- or (R)-isomer (36) and the L- or (S)-form (37) have been used in the synthesis of a wide range of biologically important compounds. For example, 36 has been used in the synthesis of L--glycerylphosphorylcholine

RESONANCE  July 2011 633 GENERAL  ARTICLE

Scheme 4. Preparation of CH 2OH H3C O CH2 (R)-2,3-O-isopropylidene- HO H H C O H . 3 HO H HO H Pb(OAc)4 36 H OH H OH

H OH H O CH3

CH 2OH H2C O CH3 41 42

(38). Reduction of 36 and 37 using Raney nickel or sodium borohydride yields 1,2-O-isopropylidene L- or (S)-glycerol (39) and its enantiomer (40), which are also widely used as chiral building blocks.

O H C O O 3 CH3 H2C O P O CH2 CH2 - H C OH O H3C O O CH3 N H3C R R CH2OH CH3 H3C 36: R = CHO 37: R = CHO 38 40: R = CH OH 39: R = CH2OH 2

D-Mannitol (41) is the starting material for the preparation of 36. It is first converted into its diacetonide (42) which is then oxida- tively cleaved with lead tetraacetate to obtain 36 as outlined in Scheme 4. Other reagents, such as sodium periodate, bismuth derivatives and meta-iodoxybenzoate, have also been used for the second step in this reaction sequence.

For the preparation of L- or (S)-2,3-O-isopropylidene-glyceralde- hyde (37) and the corresponding alcohol 40, L-ascorbic acid (43) is used as a starting material as shown in Scheme 5. The 5,6-O-

O CH3 O CH3 CH2OH CH OH O 3 O CH3 H H O O O O O 2 2 NaOCl HO H CaCO 37 Scheme 5. Preparation of 3 CO H (S)-2,3-O-isopropylidene- HO OH HO OH 2 43 44 45 glyceraldehyde.

634 RESONANCE July 2011 GENERAL  ARTICLE

H3C CH OH 3 OH O O OH O O 1. (H CO) CHN(CH ) O O 1. NaBH 3 2 3 2 HOH2C 1. NaBH O 4 O HCl HO 4 HO O O 2.(CH3CO)2O H3C 2. (CH3CO)2O HO OH 2. Acetone / O O O OH CH OAc CH H C 2 OH HO OH 0.1 NH2SO4 3 3 OH H3C CH3 CH3

H3C H CO CH3 3 HO O O O H C(OCH ) 1. NaOH O 3 3 3 Claisen O O O O 2. ClCO CH O O O O CH OAc 2 3 H C O H C 2 3 H3C 3 O CH3 CH O CH3 3

CH3 O OH H3C O O CO H O O 2 CH3 OH CH2CO2CH3 OH 46

isopropylidene derivative 44 of 43 is oxidised with hydrogen Scheme 6. Synthesis of peroxide and the resulting 45 is treated with sodium hypochlorite prostaglandin F2. to get 37.

In an ingenious synthesis of prostaglandin F2(46), Stork and co-workers incorporated some of the stereochemical features of -D-glucose in a part of the final product as shown in Scheme 6. As can be seen, a section of the lower part of 46, with the double bond between 13 and 14 positions having the E-configuration, is derived from -D-glucose.

Sugar derivatives, such as, for example, 2,3,4,6-tetrapivaloyl-D- galactosamine (47) have been used as chiral templates for the Scheme 7. Preparation of stereoselective preparation of D--amino acids by the Strecker D--amino acids by the synthesis5 as outlined in Scheme 7. Strecker synthesis.

OPiv OPiv PivO PivO HO OH CHO R O (CH3)3SiCN H O O O 3 Product NH2 N CH R PivO R PivO HO NH CH ZnCl2 (D>L) OPiv R=alkyl OPiv OH CN 47 oraryl

RESONANCE  July 2011 635 GENERAL  ARTICLE

5 Strecker Synthesis: This Biological Aspects method of synthesis of -amino acids was first devised by Adolph With the elucidation of the structures of several complex oli- Strecker, a student of Justus gosaccharides and the availability of synthetic analogues, the Liebig in the year 1850. In this method, an aldehyde is made to focus on carbohydrates has shifted to their biological activities react with potassium cyanide and potential as therapeutic agents. A decade ago, Oxford Uni- and ammonium chloride. The versity established the Oxford Glycochemistry Centre (OGC), resulting amino nitrile is subse- wherein active research is in progress on glycocode6 and quently hydrolysed to obtain 7 the desired -. A wide glycotherapeutics , along with other aspects. range of aldehydes have been used in this reaction. Several Glycoconjugates, such as carbohydrate-protein and carbohydrate- procedural modifications are lipid complexes, occur both in soluble form and as sticky nano- now available including one-pot dimensional layers on cell surfaces. The latter, known as methods (see, for example, P glycocalyx, are associated with several important biological phe- Fontaine et al., Org.Lett., Vol.10, pp.1509–1512, 2008). nomena like immune response, intracellular recognition, cellular adhesion, cell growth regulation and inflammation.

6 Glycocode refers to the com- One important area of ongoing research in this field is concerned munication mediated by carbo- with tumour-associated carbohydrate antigens, or TACAs, as for hydrates which plays a vital role in cell biological processes. example p-sial 2 (48). These oligosaccharides can serve as mo- lecular markers on cancer cell surfaces and can lead to the 7 Glycotherapeutics deals with the treatment of a wide range of development of newer and more effective anti-cancer agents. pathological conditions, such as cancer, bacterial and viral infec- OH OH HO HO2C OH OH HO2C tions, diabetics, etc., using car- HO OH CO2H bohydrate-based drugs. O O HN O O O OH HN HO OH COCH3 OH OH COCH3 n 48 Sugar derivatives, such as, for example, One of the earliest carbohydrate-based drugs to be used in clinical 2,3,4,6-tetrapivaloyl- practice was the anticoagulant, heparin, which was mentioned in D-galactosamine (47) an earlier section of this article. Since its introduction in the have been used as 1940s, several modifications have been effected in order to chiral templates for produce an anticaoagulant without the side effects of heparin. As the stereoselective a result of these studies, in the early 1980s a low-molecular preparation of D-- weight heparin became available. This compound produced by amino acids by the chemical and enzymatic fragmentation of the original heparin has Strecker synthesis. longer half-life, greater bioavailability and fewer side effects.

636 RESONANCE July 2011 GENERAL  ARTICLE

Later, synthetic analogues were prepared and based on structure- activity studies, a pentasaccharide, named Fondaparinux (49) was introduced as an anticoagulant drug. This drug was first marketed in 2002 under the trade name Arixtra.

OSO3H O HO OSO3H OSO3H HO HO2C O HO2C O O NH O O O O O HO HO HO HO3S O O NH OCH NH 3 OH HO S SO3H 3 HO3S HO3S 49 (Decasodiumsalt)

Based on the fact that carbohydrate foods have to be enzymati- cally broken down in the intestinal tract before they can be utilized for nourishment, inhibitors of -glucosidases and amy- lases have been studied as potential candidates for the treatment of diabetes. One such compound, surprisingly, is a pseudo oli- gosaccharide. This compound, (50) is of microbial origin and is produced by fermentation of Actinoplanes species.

HOH2C

HO OH H3C O OH HO O O OH HO N HO OH O H HO OH O Several HO OH carbohydrate-based 50 vaccines have been Two factors were responsible for carbohydrates to be explored as developed in recent potential vaccines against a number of diseases. (1) The sugars years to combat a present on the cell surfaces of parasites are quite distinct from wide range of those occurring in their hosts. (2) Unlike proteins, carbohydrates bacterial, viral and are evolutionarily more stable and therefore the sugars of a host parasitic infections are less likely to be changed by parasitic action. As a conse- including meningitis, quence, several carbohydrate-based vaccines have been devel- HIV and malaria. The oped in recent years to combat a wide range of bacterial, viral and structure of a malaria parasitic infections including meningitis, HIV and malaria. The vaccine contains a structure of a malaria vaccine contains a carbohydrate derivative carbohydrate of structure 51. derivative of structure 51.

RESONANCE  July 2011 637 GENERAL  ARTICLE

OH HO O HO HO

O O O O P O HO HO

HO O NH O HN HO HO

O S HO O HO OH O O HO

N O O HO O H N OH 3 O OH KLH O OH P KLH = Key hole limpet 51 O hemocyanin O OH

O Please note the fifth ring from the top: O HO H N 3 O

Conclusions

As a postscript, a quotation from the review by P H Seeberger and D B Werz sums up the future of carbohydrates, “We are still beginning to understand the importance of sugars in our lives beyond pasta, cake and chocolate. There is mounting evidence that the future of medicine will be a sweet one”.

Thus, a branch of science initially explored by Emil Fischer has not only traversed the full length of chemistry but has crossed over to the other side forming a firm bridge between the physical sciences and the life sciences.

Suggested Reading

[1] E A Davidson, Carbohydrate Chemistry, Holt, Rinehart and Winston, New York, 1967.

638 RESONANCE July 2011 GENERAL  ARTICLE

[2] J O Duus, P M St Hillaire, M Meldal and K Bock, Carbohydrate Chemistry. Synthetic and structural challenges towards the end of the 20th century, Pure Appl. Chem., Vol.71, pp.756–765, 1999, [3] P H Seeberger and D B Werz, Automated synthesis of oligosaccharides as a basis for drug discovery, Nature reviews/Drug Discovery, Vol.4, pp.751–763, 2005. [4] T K Lindhorst, Essentials of Carbohydrate Chemistry and , 3rd Edition, Wiley-VCH, Weinjheim, 2007. [5] A P Rauter and T D Lindhorst, Eds., Carbohydrate Chemistry: Chemical Address for Correspondence and Biological Approaches, Royal Society of Chemistry, 2010 N R Krishnaswamy [6] M Flice, J M Guisan and J M Palomo, Recent Trends in regioselective I2, 9th Main Road protection and deprotection of monosaccharides, Current Organic BSK Second Stage Chemistry, Vol.14, pp.516–532, 2010. Bangalore 560 070, India. [7] The Web site of Oxford Glycochemistry Centre. Email: [8] Web site of the Hanessian group, Department of Chemistry, University [email protected] of Montreal, Canada.

A Detailed Description of the Cover Page Figure

Collage of 3D structural representation of a few biomolecules with the collection potrayed as a garden. All the depicted 3D structures have been solved using X-ray and deposited in the protein data bank and are represented as cartoons. The main tree-like structure is that of a bacterial hemolysin. The glycyl residues in this protein are represented in space-fill model in red to mimic the appearance of fruits. The butterfly-like structure in the right is that of human cystatin which is a dimeric protein. The yellow coloured flower-like structure in the right bottom is that of an isomerase from E.coli. The brown coloured flower-like structure in the left is that of  -B-crystallin from bovine eye lens. This folds into two domains of similar flower-like 3D structure. The circular structure in the left bottom is that of -cyclodextrin, a carbohydrate. All the cartoon representations of 3D structures have been gener- ated using the pyMOL software.

This figure was created by Ms. G Sudha, Molecular Biophysics Unit, Indian Institute of Science, Ban- galore.

RESONANCE  July 2011 639