Carbohydrate Chemistry from Fischer to Now
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University of Cape Town
CHEMICAL AND CONFORMATIONAL STUDIES OF BACTERIAL CELL SURFACE POLYSACCHARIDE REPEATING UNITS Zaheer Timol University of Cape Town Supervisors: Neil Ravenscroft, Michelle Kuttel and David Gammon A thesis presented for the degree of Master in Science University of Cape Town March 2017 The copyright of this thesis vests in the author. No quotation from it or information derived from it is to be published without full acknowledgement of the source. The thesis is to be used for private study or non- commercial research purposes only. Published by the University of Cape Town (UCT) in terms of the non-exclusive license granted to UCT by the author. University of Cape Town Abstract Bacterial cell surface polysaccharides are primarily present as lipopolysaccharides or capsular polysac- charides. They are used by cells for both structure and function and have been shown to be a virulence factor of bacterial pathogens. Cell surface polysaccharides are widely utilised as antigenic components in vaccines and play an important role in the protection against numerous diseases including meningo- coccal disease and shigellosis. This study is composed of two parts: a computational section, which investigates the capsular polysaccharide (CPS) repeating unit (RU) conformations of meningococcal Y and W CPS vaccines and a second experimental component that involves synthetic studies toward the O-specific polysaccharide (O-SP) RU of Shigella sonnei. The CPS RU of MenY [!6)-a-D-Glc(1!4)-a-D-NeuNAc-(2!] and MenW [!6)-a-D-Gal(1!4)-a- D-NeuNAc-(2!] differ only in the orientation of the C-4 hydroxyl: equatorial in MenY and axial in MenW. -
Śląscy Nobliści: Otto Stern Kurt Alder Friedrich Bergius Śląscy Nobliści: Otto Stern, Kurt Alder, Friedrich Bergius Otto Stern ● Ur
Śląscy nobliści: Otto Stern, Kurt Alder, Friedrich Bergius Śląscy nobliści: Otto Stern Kurt Alder Friedrich Bergius Śląscy nobliści: Otto Stern, Kurt Alder, Friedrich Bergius Otto Stern ● ur. 17 lutego 1888 r. w Żorach ● zm. 17 sierpnia 1969 r.w Berkeley w stanie Kalifornia ● niemiecki fizyk ● wnuk bogatego kupca żydowskiego, właściciela żorskiego młyna ● w 1982 r. przeniósł się z rodziną do Wrocławia ● w 1912 r. uzyskał tytuł doktora chemii fizycznej na Uniwersytecie Wrocławskim ● podążając za Albertem Einsteinem, udał się na Uniwersytet Karola w Pradze, a rok później na Politechnikę w Zurychu ● tytuł doktora chemii fizycznej na Uniwersytecie Wrocławskim w roku 1912 r. ● jego rozprawa doktorska dotyczyła ciśnienia osmotycznego dwutlenku węgla w stężonych roztworach. Miała charakter zarówno praktyczny, jak też i teoretyczny. ● sam siebie określił jako „teoretyka doświadczalnego” Śląscy nobliści: Otto Stern, Kurt Alder, Friedrich Bergius ● w czasie I wojny światowej służył w różnych jednostkach technicznych armii pruskiej ● po klęsce Cesarstwa Niemieckiego przeniósł się do Frankfurtu ● w 1921 r. otrzymał stanowisko profesora fizyki teoretycznej na Uniwersytecie w Rostocku ● w 1923 r. objął stanowisko dyrektora w nowo powstałym Instytucie Chemii Fizycznej na Uniwersytecie w Hamburgu ● w 1922 r.wraz z Walterem Gerlachem przeprowadził eksperyment zwany „doświadczeniem Sterna-Gerlacha”, dzięki któremu doświadczalnie udowodnili kwantowanie momentu pędu, przyczynił się do rozwoju młodej fizyki kwantowej ● w 1933 r., ze względu na częściowe korzenie żydowskie, wyemigrował do USA ● do 1945 r. był profesorem na Carnegie Institute of Technology w Pittsburgu. Tam przystąpił do budowy laboratorium molekularnego ● 1943 r. przyniósł Sternowi Nobla z fizyki W uznaniu jego wkładu w rozwój metody wiązki molekularnej i jego odkrycia momentu magnetycznego protonu. -
Chemists Suggest a New Way to Synthesize Steroid Analogs 15 November 2017
Chemists suggest a new way to synthesize steroid analogs 15 November 2017 tandem cascade of reactions—the reactions proceed successively in the same flask under the same reaction conditions: acylation of the nitrogen atom of the starting 3-thienylallylamine with maleic anhydride, the intramolecular Diels-Alder reaction and subsequent aromatization of the cycloaddition adduct," says Fedor Zubkov, assistant professor of the Department of Organic Chemistry at the RUDN University. Diene synthesis (or the Diels-Alder reaction) is one of the most popular reactions in organic chemistry. It involves synchronous formation of two sigma- double bonds from one double bond of dienophile Intramolecular Diels-Alder reaction discussed in the and two double bonds of diene; the main product is research. Credit: Fedor Zubkov a six-membered ring with one double bond. Otto Diels and Kurt Alder received the Nobel Prize in 1950 for this reaction. Another Nobel laureate, Robert Woodward, was inspired and bound his life Scientists from RUDN University and the Ivan with chemistry after reading about Diels-Alder's Franko National University of Lviv have found a reaction. Later, he returned to it in his studies way to produce aromatic rings in organic several times. Curiously enough, it was Robert compounds in three stages. These stages proceed Woodward who founded the Tetrahedron Letters successively in one-pot conditions and at room journal, which published this paper by Russian temperature. Now analogues of hormones, scientists. steroids, some sugars, terpenes and other complex organic substances can be synthesized The intramolecular Diels-Alder reaction runs inside faster and at softer conditions. The paper was one molecule. -
Synthesis of Substituted Ring- Fused 2-Pyridones and Applications in Chemical Biology
Synthesis of Substituted Ring- Fused 2-Pyridones and Applications in Chemical Biology Christoffer Bengtsson Doctoral thesis Department of Chemistry Umeå University Umeå, Sweden 2013 Copyright © Christoffer Bengtsson 2013 ISBN: 978-91-7459-552-9 Electronic version available at http://umu.diva-portal.org/ Printed by: VMC-KBC, Umeå University Umeå, Sweden 2013 Author Christoffer Bengtsson Title Synthesis of Substituted Ring-Fused 2-Pyridones and Applications in Chemical Biology Abstract Antibiotics have been extensively used to treat bacterial infections since Alexander Fleming’s discovery of penicillin 1928. Disease causing microbes that have become resistant to antibiotic drug therapy are an increasing public health problem. According to the world health organization (WHO) there are about 440 000 new cases of multidrug-resistant tuberculosis emerging annually, causing at least 150 000 deaths. Consequently there is an immense need to develop new types of compounds with new modes of action for the treatment of bacterial infections. Presented herein is a class of antibacterial ring-fused 2- pyridones, which exhibit inhibitory effects against both the pili assembly system in uropathogenic Escherichia coli (UPEC), named the chaperone usher pathway, as well as polymerization of the major curli subunit protein CsgA, into a functional amyloid fibre. A pilus is an organelle that is vital for the bacteria to adhere to and infect host cells, as well as establish biofilms. Inhibition of the chaperone usher pathway disables the pili assembly machinery, and consequently renders the bacteria avirulent. The focus of this work has been to develop synthetic strategies to more efficiently alter the substitution pattern of the aforementioned ring- fused 2-pyridones. -
Determination of Carbohydrates in Honey Manali Aggrawal, Jingli Hu and Jeff Rohrer, Thermo Fisher Scientific, Sunnyvale, CA
Determination of carbohydrates in honey Manali Aggrawal, Jingli Hu and Jeff Rohrer, Thermo Fisher Scientific, Sunnyvale, CA ABSTRACT RESULTS SAMPLE ANALYSIS METHOD ACCURACY Table 7. Adulteration parameters for HS6 adulterated with 10% SS1 through SS5. Purpose: To develop an HPAE-PAD method for the determination of carbohydrates in honey Honey sugar analysis Sample Recovery HS6 (Wild Mountain Honey) samples to evaluate their quality and to assess the possibility of adulteration. Separation Adulteration Honey sugars were separated using a Dionex CarboPac PA210-Fast-4μm column (150 × 4 mm) in Method accuracy was evaluated by measuring recoveries of 10 sugar standards spiked into honey Parameters 100% + 10% + 10% + 10% + 10% + 10% For this study, we purchased 12 commercial honey samples (Table 1) and analyzed them using Honey SS1 SS2 SS3 SS4 SS5 Methods: Separation of individual honey sugars was achieved on the recently introduced Thermo series with a Dionex CarboPac PA210 guard column (50 × 4 mm). The column selectivity allow samples. For spiking experiments, four honey samples were used (HS7–HS10) and spiked with a 10- HPAE-PAD. Figure 3 shows the representative chromatograms of 3 honey samples. For all 12 Glucose(G), mg/L 121 115 116 117 119 107 Scientific™ Dionex™ CarboPac™ PA210-Fast-4μm column. Carbohydrate detection was by pulsed carbohydrates to be separated with only a hydroxide eluent generated using an eluent generator. A sugar standard mix at two concentration levels. Figure 4 shows the representative chromatograms investigated honey samples, fructose and glucose (Peak 2 and Peak 3), were found to be the major Fructose(F), mg/L 127 115 115 116 126 116 amperometric detection (PAD) with a gold working electrode and, therefore, no sample derivatization solution of honey sugar standards was prepared and an aliquot (10 μL) of the solution was injected of unspiked and spiked honey sample HS7. -
Robert Burns Woodward
The Life and Achievements of Robert Burns Woodward Long Literature Seminar July 13, 2009 Erika A. Crane “The structure known, but not yet accessible by synthesis, is to the chemist what the unclimbed mountain, the uncharted sea, the untilled field, the unreached planet, are to other men. The achievement of the objective in itself cannot but thrill all chemists, who even before they know the details of the journey can apprehend from their own experience the joys and elations, the disappointments and false hopes, the obstacles overcome, the frustrations subdued, which they experienced who traversed a road to the goal. The unique challenge which chemical synthesis provides for the creative imagination and the skilled hand ensures that it will endure as long as men write books, paint pictures, and fashion things which are beautiful, or practical, or both.” “Art and Science in the Synthesis of Organic Compounds: Retrospect and Prospect,” in Pointers and Pathways in Research (Bombay:CIBA of India, 1963). Robert Burns Woodward • Graduated from MIT with his Ph.D. in chemistry at the age of 20 Woodward taught by example and captivated • A tenured professor at Harvard by the age of 29 the young... “Woodward largely taught principles and values. He showed us by • Published 196 papers before his death at age example and precept that if anything is worth 62 doing, it should be done intelligently, intensely • Received 24 honorary degrees and passionately.” • Received 26 medals & awards including the -Daniel Kemp National Medal of Science in 1964, the Nobel Prize in 1965, and he was one of the first recipients of the Arthur C. -
Carbohydrates: Occurrence, Structures and Chemistry
Carbohydrates: Occurrence, Structures and Chemistry FRIEDER W. LICHTENTHALER, Clemens-Schopf-Institut€ fur€ Organische Chemie und Biochemie, Technische Universit€at Darmstadt, Darmstadt, Germany 1. Introduction..................... 1 6.3. Isomerization .................. 17 2. Monosaccharides ................. 2 6.4. Decomposition ................. 18 2.1. Structure and Configuration ...... 2 7. Reactions at the Carbonyl Group . 18 2.2. Ring Forms of Sugars: Cyclic 7.1. Glycosides .................... 18 Hemiacetals ................... 3 7.2. Thioacetals and Thioglycosides .... 19 2.3. Conformation of Pyranoses and 7.3. Glycosylamines, Hydrazones, and Furanoses..................... 4 Osazones ..................... 19 2.4. Structural Variations of 7.4. Chain Extension................ 20 Monosaccharides ............... 6 7.5. Chain Degradation. ........... 21 3. Oligosaccharides ................. 7 7.6. Reductions to Alditols ........... 21 3.1. Common Disaccharides .......... 7 7.7. Oxidation .................... 23 3.2. Cyclodextrins .................. 10 8. Reactions at the Hydroxyl Groups. 23 4. Polysaccharides ................. 11 8.1. Ethers ....................... 23 5. Nomenclature .................. 15 8.2. Esters of Inorganic Acids......... 24 6. General Reactions . ............ 16 8.3. Esters of Organic Acids .......... 25 6.1. Hydrolysis .................... 16 8.4. Acylated Glycosyl Halides ........ 25 6.2. Dehydration ................... 16 8.5. Acetals ....................... 26 1. Introduction replacement of one or more hydroxyl group (s) by a hydrogen atom, an amino group, a thiol Terrestrial biomass constitutes a multifaceted group, or similar heteroatomic groups. A simi- conglomeration of low and high molecular mass larly broad meaning applies to the word ‘sugar’, products, exemplified by sugars, hydroxy and which is often used as a synonym for amino acids, lipids, and biopolymers such as ‘monosaccharide’, but may also be applied to cellulose, hemicelluloses, chitin, starch, lignin simple compounds containing more than one and proteins. -
A Nobel Synthesis
MILESTONES IN CHEMISTRY Ian Grayson A nobel synthesis IAN GRAYSON Evonik Degussa GmbH, Rodenbacher Chaussee 4, Hanau-Wolfgang, 63457, Germany he first Nobel Prize for chemistry was because it is a scientific challenge, as he awarded in 1901 (to Jacobus van’t Hoff). described in his Nobel lecture: “The synthesis T Up to 2010, the chemistry prize has been of brazilin would have no industrial value; awarded 102 times, to 160 laureates, of whom its biological importance is problematical, only four have been women (1). The most but it is worth while to attempt it for the prominent area for awarding the Nobel Prize sufficient reason that we have no idea how for chemistry has been in organic chemistry, in to accomplish the task” (4). which the Nobel committee includes natural Continuing the list of Nobel Laureates in products, synthesis, catalysis, and polymers. organic synthesis we arrive next at R. B. This amounts to 24 of the prizes. Reading the Woodward. Considered by many the greatest achievements of the earlier organic chemists organic chemist of the 20th century, he who were recipients of the prize, we see that devised syntheses of numerous natural they were drawn to synthesis by the structural Alfred Nobel, 1833-1896 products, including lysergic acid, quinine, analysis and characterisation of natural cortisone and strychnine (Figure 1). 6 compounds. In order to prove the structure conclusively, some In collaboration with Albert Eschenmoser, he achieved the synthesis, even if only a partial synthesis, had to be attempted. It is synthesis of vitamin B12, a mammoth task involving nearly 100 impressive to read of some of the structures which were deduced students and post-docs over many years. -
AP Biology Summer Assignment Holy Spirit Prep 2019
AP Biology Summer Assignment Holy Spirit Prep 2019 Textbook: “Principle of Life” 2nd edition, for the AP course 2018 Chapters 1-3 (pages 1-59) This summer assignment will cover the introduction to biology, chemistry of life, and essential macromolecules for life. The concepts covered in these chapters are either review from previous classes or relatively easy enough to allow you to work through them on your own. The more complex connections between these chapters will be discussed during the first two weeks of the school year. Biozone Workbook: “AP Biology 1” Student edition, 2nd edition 2017 and Biozone Workbook: “AP Biology 2” Student edition, 2nd edition 2017 Read each chapter in the text book, answer all the questions listed below, and complete the corresponding pages in the biozone workbooks covering those topics. The answers can be typed or handwritten for the questions below and written in the workbook for the biozone pages listed. Do not tear out the biozone workbook pages. I will check your answers directly from the workbook. This assignment will be due on Wednesday, Aug 21, 2019. We will have a test over the material during the second week of the school year. For questions, contact Mr. Harrison at [email protected] Chapter 1: Principles of Life Answer the following: 1. Organisms share many conserved biological, chemical, and structural characteristics. Briefly outline the 8 distinctive characteristics of life shared by all living organisms. 2. How do the shared characteristics on your list (in #1) provide evidence for evolution? 3. There are several competing hypotheses about the evolution of early life on Earth, but as life evolved, all cells clearly had requirements for raw materials and energy transfers. -
Structures of Branched Dextrins Produced by Saccharifying A-Amylase of Bacillus Subtilis
/. Biochem., 72, 1219-1226 (1972) Structures of Branched Dextrins Produced by Saccharifying a-Amylase of Bacillus subtilis Kimio UMEKI and Takehiko YAMAMOTO Downloaded from https://academic.oup.com/jb/article/72/5/1219/878303 by guest on 29 September 2021 The Faculty of Science, Osaka City University, Osaka Received for publication, May 25, 1972 The branched dextrins produced from waxy rice starch ^-limit dextrin by Bacillus subtilis' saccharifying a-amylse [EC 3.2.1.1] were isolated by the multiple develop- ment paper chromatography and their chemical structures were investigated. The analyses using £-amylase [EC 3.2.1. 2], glucoamylase [EC 3.2.1.3], pullulanase, and pullulan a-1,4-glucoside hydrolase revealed that they were doubly branched dextrins with the following structures: e'-a-^'-a-glucosylmaltosylJ-maltotriose, 68-a-, 65-a- diglucosylmaltopentaose, and 68-a-{6*-a-glucosylmaltotriosyl)-maltotriose. The results were discussed in connection with the interior structure of /3-limit dextrin. Only a few papers have so far been published from each other (8, 9). on the action of a-amylase [EC 3.2.1.1] on The saccharifying a-amylase is character- branched substrates (1-3). French and his istic in that it hydrolyzes starch to produce coworkers have reported that the porcine reducing sugars of about twice as much as pancreatic a-amylase produces various branched those produced by the liquefying a-amylase dextrins as the limit dextrins (4). Our pre- and none of the hydrolysis products by the vious paper (5) has also shown that a-amylase saccharifying a-amylase are attacked by the of starch liquefying type from Bacillus subtilis liquefying a-amylase. -
Aerospace Medicine & Biology Space Medicine & Biology Aero 9
Aerospace Medicine NASA SP-7011 (232) and Biology May 1982 IWNSA A Continuing Bibliography with Indexes (NASA-SP-701 1 (232) ) AT. CE MEDICINE AND N82-2898U BIOLOGY: A CONTINUING BIBLIOGRAPHY WITH INDEXES (SUPPLEMENT 232) (National Aeronautics and Space Administration) 137 p Unclas Hc <7.QQ CSCL Ofa£ 00/52 25483 National Aeronautics and Space Administration Aerospace Medicine & Biology space Medicine & Biology Aero 9 Medicine & Biology Aerospao dicine & Biology Aerospace M ne & Biology AerosjatoiMedici Biology Aerospace Medicine & gy Aerospace Medicine & Biolo 3rospace Medicine & Biology / pace Medicine & Biology Aeros Medicine & Biology Aerospace cine & Biology Aerospace Med & Biology Aerospace Medicine < ACCESSION NUMBER RANGES Accession numbers cited in this Supplement fall within the following ranges. STAR (N-10000 Series) N82-16040 - N82-18118 IAA (A-10000 Series) A82-18840 - A82-22250 This bibliography was prepared by the NASA Scientific and Technical Information Facility operated for the National Aeronautics and Space Administration by PRC Government Information Systems. NASA SP-7011(232) AEROSPACE MEDICINE AND BIOLOGY A CONTINUING BIBLIOGRAPHY WITH INDEXES (Supplement 232) A selection of annotated references to unclassified reports and journal articles that were introduced into the NASA scientific and technical information sys- tem and announced in April 1982 in Scientific and Technical Aerospace Reports (STAR) International Aerospace Abstracts (IA A). Scientific and Technical Information Branch 1982 National Aeronautics and Space Administration Washington, DC NASA SP-7011 and its supplements are available from the National Technical Information Service (NTIS). Questions on the availability of the predecessor publications, Aerospace Medicine and Biology (Volumes I - XI) should be directed to NTIS. This supplement is available as NTISUB/123/093 from the National Technical Information Service (NTIS), Springfield, Virginia 22161 at the price of $7.00 domestic; $14.00 foreign. -
Max Planck Institute for the History of Science Werner Heisenberg And
MAX-PLANCK-INSTITUT FÜR WISSENSCHAFTSGESCHICHTE Max Planck Institute for the History of Science PREPRINT 203 (2002) Horst Kant Werner Heisenberg and the German Uranium Project Otto Hahn and the Declarations of Mainau and Göttingen Werner Heisenberg and the German Uranium Project* Horst Kant Werner Heisenberg’s (1901-1976) involvement in the German Uranium Project is the most con- troversial aspect of his life. The controversial discussions on it go from whether Germany at all wanted to built an atomic weapon or only an energy supplying machine (the last only for civil purposes or also for military use for instance in submarines), whether the scientists wanted to support or to thwart such efforts, whether Heisenberg and the others did really understand the mechanisms of an atomic bomb or not, and so on. Examples for both extreme positions in this controversy represent the books by Thomas Powers Heisenberg’s War. The Secret History of the German Bomb,1 who builds up him to a resistance fighter, and by Paul L. Rose Heisenberg and the Nazi Atomic Bomb Project – A Study in German Culture,2 who characterizes him as a liar, fool and with respect to the bomb as a poor scientist; both books were published in the 1990s. In the first part of my paper I will sum up the main facts, known on the German Uranium Project, and in the second part I will discuss some aspects of the role of Heisenberg and other German scientists, involved in this project. Although there is already written a lot on the German Uranium Project – and the best overview up to now supplies Mark Walker with his book German National Socialism and the quest for nuclear power, which was published in * Paper presented on a conference in Moscow (November 13/14, 2001) at the Institute for the History of Science and Technology [àÌÒÚËÚÛÚ ËÒÚÓËË ÂÒÚÂÒÚ‚ÓÁ̇ÌËfl Ë ÚÂıÌËÍË ËÏ.