2. Drinking Water Systems in Buildings

Total Page:16

File Type:pdf, Size:1020Kb

2. Drinking Water Systems in Buildings g e n liviC tnm apeD apeD r apeD r r nemt nemt t nemt t o t o f o f C f C i C v i v i v l i l i l gnE gnE i gnE i i een een r een r i r i i gn gn gn .sroodni emit rieht fo tsom dneps snamuH snamuH snamuH dneps dneps dneps tsom tsom tsom fo fo fo rieht rieht rieht emit emit emit .sroodni .sroodni .sroodni - o- t o t l aA l aA smetsys st i ht iw tnemnor ivne t l iub er i tne ehT ehT ehT tne i tne i tne er i er er iub l iub t l iub t l t ivne ivne ivne tnemnor tnemnor tnemnor iw iw ht iw ht ht i i st i st st smetsys smetsys smetsys - o t l aA DD DD DD MMicrobiologicalMicrobiologicalicrobiological effectseffectseffects ofofof yaw a ni detarepo dna dengised eb dluohs dluohs dluohs eb eb eb dengised dengised dengised dna dna dna detarepo detarepo detarepo ni ni ni a a a yaw yaw yaw 681 681 681 / / .efas yl lacigoloiborcim si t i taht taht i taht t i t i t si si si lacigoloiborcim lacigoloiborcim yl lacigoloiborcim yl yl .efas .efas .efas / nen inen knI i knI i nneJ i nneJ nen i knI i nneJ 8102 8102 8102 ccoppercopperopper andandand otherotherother abioticabioticabiotic euqinu eht no sesucof siseht sihT sihT sihT siseht siseht siseht sesucof sesucof sesucof no no no eht eht eht euqinu euqinu euqinu n ea nkidf ecnlcgliocim im im lacigoloiborc lacigoloiborc lacigoloiborc sehcin sehcin sehcin fo fo fo gniknird gniknird gniknird retaw retaw retaw dna dna dna gniz i l i tu stnemnor ivne roodni ecaf rus hcuot hcuot hcuot rus rus rus ecaf ecaf ecaf roodni roodni roodni ivne ivne ivne stnemnor stnemnor stnemnor tu i tu l i tu i l i i l i gniz gniz gniz ffactorsfactorsactors ininin drinkingdrinkingdrinking waterwaterwater ef i l - laer dna seigolonhcet etad-ot-pu etad-ot-pu etad-ot-pu seigolonhcet seigolonhcet seigolonhcet dna dna dna laer - laer l - laer i l - i l ef i ef ef no sisahpme htiw stnemnorivne stnemnorivne stnemnorivne htiw htiw htiw sisahpme sisahpme sisahpme no no no cs ph th socf anmo ivne ivne ivne latnemnor latnemnor latnemnor srotcaf srotcaf srotcaf taht taht taht epahs epahs epahs hcus hcus hcus aandandnd touchtouchtouch surfacesurfacesurface ea tbn rpo f lr h aobr im im im .atoiborc .atoiborc .atoiborc ehT ehT ehT elor elor elor fo fo fo reppoc reppoc reppoc ni ni ni htob htob htob retaw retaw retaw . tseretni laiceps fo si secafretni ria dna dna dna ria ria ria secafretni secafretni secafretni si si si fo fo fo laiceps laiceps laiceps tseretni . tseretni . tseretni . eenvironmentsenvironmentsnvironments JJennienniJenni Inkinen InkinenInkinen NSI I I NBS NBS NBS 8-1908-06-259-879 8-1908-06-259-879 ( 8-1908-06-259-879 p ( p r ( i p r n i r n t i n t de t de ) de ) ) SSENISUB SSENISUB SSENISUB + + + stnemnor ivne ecaf rus hcuot dna retaw gniknird ni gniknird retaw ni ivne dna ecafsrotcaf rus gniknird hcuot retaw ivne dna ecafsrotcaf rus hcuot c i fo toiba c reppoc istcefdna rehto fostnemnor toiba reppoc stcefdna ferehto stnemnor felacigoloiborc iM lacigoloiborc iM NSI I I NBS NBS NBS 5-2908-06-259-879 5-2908-06-259-879 ( 5-2908-06-259-879 ( dp ( dp f ) dp f ) f ) E E E MONOC MONOC Y MONOC Y Y ni gniknird retaw ivne dna ecafsrotcaf rus hcuot c ifo toiba reppoc stcefdna rehto stnemnor fe lacigoloiborc iM NSI I I NSS NSS NSS 9971 9971 - 9971 - - 4394 4394 ( 4394 p ( p r ( i p r n i r n t i n t de t de ) de ) ) NSI I I NSS NSS NSS 9971 9971 - 9971 - - 2494 2494 ( 2494 ( dp ( dp f ) dp f ) f ) TRA TRA + TRA + + NGISED NGISED NGISED + + + ytisrevinU otlaA otlaA otlaA ytisrevinU ytisrevinU ytisrevinU HCRA HCRA I HCRA T I T I T TCE TCE TCE ERU ERU ERU nirenigE loohcS oohcS l oohcS l o l o f o f f gnE gnE i gnE i i een een r een i r i r gn i gn gn nirenigE fo etrapeD apeD r apeD r r nemt nemt t nemt t o t o f o f C f C i C v i v i i l v i l i l gnE gnE i gnE i i een een r een i r i r gn i gn gn ECNEICS ECNEICS ECNEICS + + + if.otlaa.www www . www a . a a . a a l t a l o t l o . t f o . i f . i f i T T E T E E ONHC ONHC L ONHC L L GO GO Y GO Y Y R VOSSORC VOSSORC VOSSORC RE RE RE COD COD T COD T T RO RO A RO A L A L L +ibjaia*GMFTSH9 +ibjaia*GMFTSH9 +ibjaia*GMFTSH9 COD COD T COD T T RO RO A RO A L A L L SNOITATRESSID SNOITATRESSID SNOITATRESSID ytisrevinU otlaA otlaA ytisrevinU ytisrevinU SNOITATRESSID SNOITATRESSID SNOITATRESSID otlaA ytisrevinU 8102 8102 8102 Aalto University publication series DOCTORAL DISSERTATIONS 186/2018 Microbiological effects of copper and other abiotic factors in drinking water and touch surface environments Jenni Inkinen A doctoral dissertation completed for the degree of Doctor of Science (Technology) to be defended, with the permission of the Aalto University School of Engineering, at a public examination held at the lecture hall M1 of the school on 12 October 2018 at 12. Aalto University School of Engineering Department of Civil Engineering Indoor Environment Technology Supervising professors Professor Heidi Salonen, Aalto University School of Engineering, Finland Professor Katrina Nordström, Aalto University School of Chemical Technology, Finland Thesis advisors PhD Minna Keinänen-Toivola, Satakunta University of Applied Sciences, Finland PhD Merja Ahonen, Satakunta University of Applied Sciences, Finland Docent Tarja Pitkänen, National Institute for Health and Welfare, Finland Preliminary examiners Professor Darla M. Goeres, Montana State University, US PhD Gadi Borkow, Cupron Inc., Israel Opponent PhD Frederik Hammes, Eawag, Swiss Federal Institute of Aquatic Science and Technology, Switzerland Aalto University publication series DOCTORAL DISSERTATIONS 186/2018 © 2018 Jenni Inkinen ISBN 978-952-60-8091-8 (printed) ISBN 978-952-60-8092-5 (pdf) ISSN 1799-4934 (printed) ISSN 1799-4942 (pdf) http://urn.fi/URN:ISBN:978-952-60-8092-5 Unigrafia Oy Helsinki 2018 Finland Publication orders (printed book): [email protected] Abstract Aalto University, P.O. Box 11000, FI-00076 Aalto www.aalto.fi Author Jenni Inkinen Name of the doctoral dissertation Microbiological effects of copper and other abiotic factors in drinking water and touch surface environments Publisher School of Engineering Unit Department of Civil Engineering Series Aalto University publication series DOCTORAL DISSERTATIONS 186/2018 Field of research Indoor Environment Technology Manuscript submitted 9 September 2018 Date of the defence 12 October 2018 Permission to publish granted (date) 10 August 2018 Language English Monograph Article dissertation Essay dissertation Abstract Humans spend most of their time indoors. The built environment with its systems (e.g. water system) should be designed and operated in a way that it is microbiologically safe in all stages of operation. Copper is a widely used material within indoor environments and may aid to maintain low bacterial counts in drinking water and touch surface environments depending on the surroun- ding circumstances e.g. water/air interface, biofilm formation or soiling. Basic knowledge of the composition of drinking water bacteria has been earlier limited only to a small cultivable fraction of bacteria. Next-generation sequencing (NGS) technologies help to reveal entire microbial commu- nities and to date these approaches are also extended to cover studies on drinking water systems. This thesis focuses on the unique microbiological niches of drinking water and touch surface indoor environments utilizing up-to-date technologies and real-life environments with emphasis on environmental factors that shape such microbiota. The role of copper in both water and air interfaces is of special interest. NGS approach was utilised to evaluate the effect of copper pipelines on biofilm or water micro- biota under real-life circumstances (full-scale water system) and under controlled conditions (pilot- scale system). Copper was compared to another commonly used pipeline material, cross-linked polyethylene (PEX). Environmental conditions i.e. the effect of cold and hot water systems with different flow regimes and temperatures (full-scale), and disinfection and magnetic water treat- ment (pilot-scale) were studied by NGS or traditional analysis methods in which stagnated water represented the worst-case scenario for water quality. The microbiological effects of copper in touch surface environment were studied at different real-life facilities under varying environmental circumstances (e.g. usage profiles, cleaning). This thesis successfully revealed the active and dormant bacterial inhabitants of the drinking water system utilizing 16S ribosomal RNA gene amplicon sequencing and ribosomal RNA as a template. For public health relevance, Legionella spp. were suggested as inactive using the RNA approach. Operational conditions (stagnation, temperature) and increased disinfectant concen- tration were revealed as important environmental factors that shape drinking water bacterial populations. Moreover, the study emphasizes the importance of use of only fresh water for drinking water usage, in accordance with the current recommended practises. Based on this study, copper pipelines showed similar characteristics to PEX pipelines without antibacterial properties in drin- king water systems. At the air interface however, copper showed antibacterial properties with varying real-life circumstances. Thus, its usage as an antibacterial touch surface material can be recommended especially for small frequently touched items that were shown to possess the highest microbial counts.
Recommended publications
  • Identification by 16S Ribosomal RNA Gene Sequencing of an Enterobacteriaceae Species from a Bone Marrow Transplant Recipient
    J Clin Pathol: Mol Pathol 2000;53:211–215 211 Identification by 16S ribosomal RNA gene sequencing of an Enterobacteriaceae species from Mol Path: first published as 10.1136/mp.53.4.211 on 1 August 2000. Downloaded from a bone marrow transplant recipient PCYWoo,PKLLeung, K W Leung, K Y Yuen Abstract with biochemical characteristics that do not fit Aims—To ascertain the clinical relevance into patterns of any known genus and species. of a strain of Enterobacteriaceae isolated Since the discovery of the polymerase chain from the stool of a bone marrow trans- reaction (PCR) and DNA sequencing, the plant recipient with diarrhoea. The isolate genomes of some bacteria have been se- could not be identified to the genus level quenced completely.1 A comparison of the by conventional phenotypic methods and genomic sequences of bacterial species showed required 16S ribosomal RNA (rRNA) gene that the 16S ribosomal RNA (rRNA) gene is sequencing for full identification. highly conserved within a species and among Methods—The isolate was investigated species of the same genus, and hence can be phenotypically by standard biochemical used as the new gold standard for the methods using conventional biochemical speciation of bacteria. Using this new standard, tests and two commercially available sys- phylogenetic trees based on base diVerences tems, the Vitek (GNI+) and API (20E) sys- between species are constructed; bacteria are tems. Genotypically, the 16S bacterial classified and re-classified into new genera;23 rRNA gene was amplified by the polymer- and classifications of non-cultivable micro- ase chain reaction (PCR) and sequenced.
    [Show full text]
  • NCTC) Bacterial Strain Equivalents to American Type Culture Collection (ATCC) Bacterial Strains
    This list shows National Collection of Type Cultures (NCTC) bacterial strain equivalents to American Type Culture Collection (ATCC) bacterial strains. NCTC Number CurrentName ATCC Number NCTC 7212 Acetobacter pasteurianus ATCC 23761 NCTC 10138 Acholeplasma axanthum ATCC 25176 NCTC 10171 Acholeplasma equifetale ATCC 29724 NCTC 10128 Acholeplasma granularum ATCC 19168 NCTC 10172 Acholeplasma hippikon ATCC 29725 NCTC 10116 Acholeplasma laidlawii ATCC 23206 NCTC 10134 Acholeplasma modicum ATCC 29102 NCTC 10188 Acholeplasma morum ATCC 33211 NCTC 10150 Acholeplasma oculi ATCC 27350 NCTC 10198 Acholeplasma parvum ATCC 29892 NCTC 8582 Achromobacter denitrificans ATCC 15173 NCTC 10309 Achromobacter metalcaligenes ATCC 17910 NCTC 10807 Achromobacter xylosoxidans subsp. xylosoxidans ATCC 27061 NCTC 10808 Achromobacter xylosoxidans subsp. xylosoxidans ATCC 17062 NCTC 10809 Achromobacter xylosoxidans subsp. xylosoxidans ATCC 27063 NCTC 12156 Acinetobacter baumannii ATCC 19606 NCTC 10303 Acinetobacter baumannii ATCC 17904 NCTC 7844 Acinetobacter calcoaceticus ATCC 15308 NCTC 12983 Acinetobacter calcoaceticus ATCC 23055 NCTC 8102 acinetobacter dna group 13 ATCC 17903 NCTC 10304 Acinetobacter genospecies 13 ATCC 17905 NCTC 10306 Acinetobacter haemolyticus ATCC 17907 NCTC 10305 Acinetobacter haemolyticus subsp haemolyticus ATCC 17906 NCTC 10308 Acinetobacter johnsonii ATCC 17909 NCTC 10307 Acinetobacter junii ATCC 17908 NCTC 5866 Acinetobacter lwoffii ATCC 15309 NCTC 12870 Actinobacillus delphinicola ATCC 700179 NCTC 8529 Actinobacillus equuli ATCC 19392
    [Show full text]
  • Legionella Shows a Diverse Secondary Metabolism Dependent on a Broad Spectrum Sfp-Type Phosphopantetheinyl Transferase
    Legionella shows a diverse secondary metabolism dependent on a broad spectrum Sfp-type phosphopantetheinyl transferase Nicholas J. Tobias1, Tilman Ahrendt1, Ursula Schell2, Melissa Miltenberger1, Hubert Hilbi2,3 and Helge B. Bode1,4 1 Fachbereich Biowissenschaften, Merck Stiftungsprofessur fu¨r Molekulare Biotechnologie, Goethe Universita¨t, Frankfurt am Main, Germany 2 Max von Pettenkofer Institute, Ludwig-Maximilians-Universita¨tMu¨nchen, Munich, Germany 3 Institute of Medical Microbiology, University of Zu¨rich, Zu¨rich, Switzerland 4 Buchmann Institute for Molecular Life Sciences, Goethe Universita¨t, Frankfurt am Main, Germany ABSTRACT Several members of the genus Legionella cause Legionnaires’ disease, a potentially debilitating form of pneumonia. Studies frequently focus on the abundant number of virulence factors present in this genus. However, what is often overlooked is the role of secondary metabolites from Legionella. Following whole genome sequencing, we assembled and annotated the Legionella parisiensis DSM 19216 genome. Together with 14 other members of the Legionella, we performed comparative genomics and analysed the secondary metabolite potential of each strain. We found that Legionella contains a huge variety of biosynthetic gene clusters (BGCs) that are potentially making a significant number of novel natural products with undefined function. Surprisingly, only a single Sfp-like phosphopantetheinyl transferase is found in all Legionella strains analyzed that might be responsible for the activation of all carrier proteins in primary (fatty acid biosynthesis) and secondary metabolism (polyketide and non-ribosomal peptide synthesis). Using conserved active site motifs, we predict Submitted 29 June 2016 some novel compounds that are probably involved in cell-cell communication, Accepted 25 October 2016 Published 24 November 2016 differing to known communication systems.
    [Show full text]
  • Virulence Determinants, Drug Resistance and Mobile Genetic
    Lau et al. Cell & Bioscience 2011, 1:17 http://www.cellandbioscience.com/content/1/1/17 Cell & Bioscience RESEARCH Open Access Virulence determinants, drug resistance and mobile genetic elements of Laribacter hongkongensis: a genome-wide analysis Susanna KP Lau1,2,3,4*†, Gilman KM Wong4†, Alan KL Tsang4†, Jade LL Teng4, Rachel YY Fan4, Herman Tse1,2,3,4, Kwok-Yung Yuen1,2,3,4 and Patrick CY Woo1,2,3,4* Abstract Background: Laribacter hongkongensis is associated with community-acquired gastroenteritis and traveler’s diarrhea. In this study, we performed an in-depth annotation of the genes in its genome related to the various steps in the infective process, drug resistance and mobile genetic elements. Results: For acid and bile resistance, L. hongkongensis possessed a urease gene cassette, two arc gene clusters and bile salt efflux systems. For intestinal colonization, it possessed a putative adhesin of the autotransporter family homologous to those of diffusely adherent Escherichia coli (E. coli) and enterotoxigenic E. coli. To evade from host defense, it possessed superoxide dismutase and catalases. For lipopolysaccharide biosynthesis, it possessed the same set of genes that encode enzymes for synthesizing lipid A, two Kdo units and heptose units as E. coli, but different genes for its symmetrical acylation pattern, and nine genes for polysaccharide side chains biosynthesis. It contained a number of CDSs that encode putative cell surface acting (RTX toxin and hemolysins) and intracellular cytotoxins (patatin-like proteins) and enzymes for invasion (outer membrane phospholipase A). It contained a broad variety of antibiotic resistance-related genes, including genes related to b-lactam (n = 10) and multidrug efflux (n = 54).
    [Show full text]
  • The Risk to Human Health from Free-Living Amoebae Interaction with Legionella in Drinking and Recycled Water Systems
    THE RISK TO HUMAN HEALTH FROM FREE-LIVING AMOEBAE INTERACTION WITH LEGIONELLA IN DRINKING AND RECYCLED WATER SYSTEMS Dissertation submitted by JACQUELINE MARIE THOMAS BACHELOR OF SCIENCE (HONOURS) AND BACHELOR OF ARTS, UNSW In partial fulfillment of the requirements for the award of DOCTOR OF PHILOSOPHY in ENVIRONMENTAL ENGINEERING SCHOOL OF CIVIL AND ENVIRONMENTAL ENGINEERING FACULTY OF ENGINEERING MAY 2012 SUPERVISORS Professor Nicholas Ashbolt Office of Research and Development United States Environmental Protection Agency Cincinnati, Ohio USA and School of Civil and Environmental Engineering Faculty of Engineering The University of New South Wales Sydney, Australia Professor Richard Stuetz School of Civil and Environmental Engineering Faculty of Engineering The University of New South Wales Sydney, Australia Doctor Torsten Thomas School of Biotechnology and Biomolecular Sciences Faculty of Science The University of New South Wales Sydney, Australia ORIGINALITY STATEMENT '1 hereby declare that this submission is my own work and to the best of my knowledge it contains no materials previously published or written by another person, or substantial proportions of material which have been accepted for the award of any other degree or diploma at UNSW or any other educational institution, except where due acknowledgement is made in the thesis. Any contribution made to the research by others, with whom 1 have worked at UNSW or elsewhere, is explicitly acknowledged in the thesis. I also declare that the intellectual content of this thesis is the product of my own work, except to the extent that assistance from others in the project's design and conception or in style, presentation and linguistic expression is acknowledged.' Signed ~ ............................
    [Show full text]
  • Diplomarbeit
    DIPLOMARBEIT Titel der Diplomarbeit Influence of wastewater composition and operational mode on the community structure of nitrifying bacteria in wastewater treatment plants angestrebter akademischer Grad Magister/Magistra der Naturwissenschaften (Mag. rer.nat.) Verfasserin / Verfasser: Anneliese Müller Matrikel-Nummer: 0107262 Studienrichtung (lt. Ökologie Studienblatt): Betreuerin / Betreuer: Univ.-Prof. Mag. Dr. Michael Wagner Wien, am 10.11.2008 Table of contents A. Introduction 1 A.1. Wastewater treatment plants and ecological theory 1 A.2. The global nitrogen cycle 1 A.2.1. Ammonia-oxidizing bacteria 3 A.2.2. Ammonia-oxidizing archaea 6 A.2.3. Nitrite-oxidizing bacteria 7 A.2.4. Anaerobic ammonia-oxidizing bacteria 9 A.3. Biological nitrogen removal during wastewater treatment 10 A.3.1. Different design of wastewater treatment plants 11 A.3.1.1. Conventional full-scale treatment plants 11 A.3.1.2. Sequencing Batch Reactors 12 A.3.1.3. Fixed / Fluidized bed reactors 12 A.3.1.4. Membrane bioreactors 13 A.3.2. Different operating strategies 13 A.3.3. Wastewater composition 16 A.3.4. The concept of diversity and stability 17 A.4. Aims of the study 19 B. Materials and Methods 20 B.1. Investigated wastewater treatment plants 20 B.1.1. Conventional full-scale wastewater treatment plants 21 B.1.1.1. Plattling 21 B.1.1.2. Kraftisried 21 B.1.1.3 Oberding 23 B.1.1.4. GZM TBA Lyss 23 B.1.1.5. ARA Lyss 24 B.1.2. Sequencing batch reactors 24 B.1.3.DIC-Sequencing Batch Reactors 25 B.2.
    [Show full text]
  • List of the Pathogens Intended to Be Controlled Under Section 18 B.E
    (Unofficial Translation) NOTIFICATION OF THE MINISTRY OF PUBLIC HEALTH RE: LIST OF THE PATHOGENS INTENDED TO BE CONTROLLED UNDER SECTION 18 B.E. 2561 (2018) By virtue of the provision pursuant to Section 5 paragraph one, Section 6 (1) and Section 18 of Pathogens and Animal Toxins Act, B.E. 2558 (2015), the Minister of Public Health, with the advice of the Pathogens and Animal Toxins Committee, has therefore issued this notification as follows: Clause 1 This notification is called “Notification of the Ministry of Public Health Re: list of the pathogens intended to be controlled under Section 18, B.E. 2561 (2018).” Clause 2 This Notification shall come into force as from the following date of its publication in the Government Gazette. Clause 3 The Notification of Ministry of Public Health Re: list of the pathogens intended to be controlled under Section 18, B.E. 2560 (2017) shall be cancelled. Clause 4 Define the pathogens codes and such codes shall have the following sequences: (1) English alphabets that used for indicating the type of pathogens are as follows: B stands for Bacteria F stands for fungus V stands for Virus P stands for Parasites T stands for Biological substances that are not Prion R stands for Prion (2) Pathogen risk group (3) Number indicating the sequence of each type of pathogens Clause 5 Pathogens intended to be controlled under Section 18, shall proceed as follows: (1) In the case of being the pathogens that are utilized and subjected to other law, such law shall be complied. (2) Apart from (1), the law on pathogens and animal toxin shall be complied.
    [Show full text]
  • Genetic and Functional Studies of the Mip Protein of Legionella
    t1.ì. Genetic and Functional Studies of the Mip Protein of Legionella Rodney Mark Ratcliff, BSc (Hons)' MASM Infectious Diseases Laboratories Institute of Medical and Veterinary Science and Department of Microbiology and Immunology UniversitY of Adelaide. Adelaide, South Australia A thesis submitted to the University of Adelaide for the degree of I)octor of Philosophy 15'h March 2000 amended 14th June 2000 Colonies of several Legionella strains on charcoal yeast extract agar (CYE) after 4 days incubation at 37"C in air. Various magnifications show typical ground-glass opalescent appearance. Some pure strains exhibit pleomorphic growth or colour. The top two photographs demonstrate typical red (LH) and blue-white (RH) fluorescence exhibited by some species when illuminated by a Woods (IJV) Lamp. * t Table of Contents .1 Chapter One: Introduction .1 Background .............'. .2 Morphology and TaxonomY J Legionellosis ............. 5 Mode of transmission "..'....'. 7 Environmental habitat 8 Interactions between Legionella and phagocytic hosts 9 Attachment 11 Engulfment and internalisation.'.. 13 Intracellular processing 13 Intracellular replication of legionellae .. " "' " "' 15 Host cell death and bacterial release 18 Virulence (the Genetic factors involved with intracellular multiplication and host cell killing .20 icm/dot system) Legiolysin .25 Msp (Znn* metaloprotease) ...'..... .25 .28 Lipopolysaccharide .29 The association of flagella with disease.. .30 Type IV fimbriae.... .31 Major outer membrane proteins....'.......'. JJ Heat shock proteins'.'. .34 Macrophage infectivity potentiator (Mip) protein Virulenceiraits of Legionella species other than L. pneumophila..........' .39 phylogeny .41 Chapter One (continued): Introduction to bacterial classification and .41 Identificati on of Legionella...'.,..'.. .46 Phylogeny .52 Methods of phylogenetic analysis' .53 Parsimony methods.'.. .55 Distance methods UPGMA cluster analYsis.'.'...
    [Show full text]
  • Electronic Laboratory Reporting Use Case January 2011
    ILLINOIS HEALTH INFORMATION EXCHANGE Electronic Laboratory Reporting Use Case Electronic Laboratory Reporting and Health Information Exchange Illinois Health Information Exchange Public Health Work Group January 2011 Electronic Laboratory Reporting Use Case January 2011 Table of Contents 1.0 Executive Summary……………………………………………………………………….3 2.0 Introduction…………………………………………………………………...……………..5 3.0 Scope……………………………………..………………………………………………………5 4.0 Use Case Stakeholders…………………………………………………………….….....6 5.0 Issues and Obstacles……………………………………………………………………...8 6.0 Use Case Pre-Conditions .………………….…………………………………………...8 7.0 Use Case Post-Conditions.……………………………………………………………...9 8.0 Detailed Scenarios/Technical Specifications.………………………………10 9.0 Validation and Certification………………………………………………………...12 Appendix ………………………………………………………………………………………….....13 Page 2 Electronic Laboratory Reporting Use Case January 2011 1.0 Executive Summary This Use Case is a product of the Public Health Work Group (PHWG) of the Illinois Health Information Exchange (HIE) Advisory Committee. The Illinois HIE Advisory Committee was constituted as the diverse public healthcare stakeholder body providing input and recommendations on the creation of the Illinois Health Information Exchange Authority (“the Authority”) as the Illinois vehicle for designing and implementing electronic health information exchange in Illinois. The establishment of the Authority marks the formal transition of the work of the HIE Advisory Committee and the Work Groups into alignment with the provisions of Illinois
    [Show full text]
  • WO 2014/176636 A9 6 November 2014 (06.11.2014) P O P C T
    (12) INTERNATIONAL APPLICATION PUBLISHED UNDER THE PATENT COOPERATION TREATY (PCT) CORRECTED VERSION (19) World Intellectual Property Organization International Bureau (10) International Publication Number (43) International Publication Date WO 2014/176636 A9 6 November 2014 (06.11.2014) P O P C T (51) International Patent C I 1/40 Moira Street, Adamstown, New South Wales 2289 C07C 279/02 (2006.01) C07C 275/68 (2006.01) (AU). C07C 241/04 (2006.01) A61K 31/4045 (2006.01) (74) Agent: WRAYS; 56 Ord Street, West Perth, Western Aus C07C 281/08 (2006.01) A61K 31/155 (2006.01) tralia 6005 (AU). C07C 337/08 (2006.01) A61K 31/4192 (2006.01) C07C 281/18 (2006.01) A61K 31/341 (2006.01) (81) Designated States (unless otherwise indicated, for every C07C 249/14 (2006.01) A61K 31/381 (2006.01) kind of national protection available): AE, AG, AL, AM, C07D 407/12 (2006.01) A61K 31/498 (2006.01) AO, AT, AU, AZ, BA, BB, BG, BH, BN, BR, BW, BY, C07D 403/12 (2006.01) A61K 31/44 (2006.01) BZ, CA, CH, CL, CN, CO, CR, CU, CZ, DE, DK, DM, C07D 409/12 (2006.01) A61K 31/12 (2006.01) DO, DZ, EC, EE, EG, ES, FI, GB, GD, GE, GH, GM, GT, C07D 401/12 (2006.01) A61P 31/04 (2006.01) HN, HR, HU, ID, IL, IN, IR, IS, JP, KE, KG, KN, KP, KR, KZ, LA, LC, LK, LR, LS, LT, LU, LY, MA, MD, ME, (21) International Application Number: MG, MK, MN, MW, MX, MY, MZ, NA, NG, NI, NO, NZ, PCT/AU20 14/000483 OM, PA, PE, PG, PH, PL, PT, QA, RO, RS, RU, RW, SA, (22) International Filing Date: SC, SD, SE, SG, SK, SL, SM, ST, SV, SY, TH, TJ, TM, 1 May 2014 (01 .05.2014) TN, TR, TT, TZ, UA, UG, US, UZ, VC, VN, ZA, ZM, ZW.
    [Show full text]
  • Susceptibility and Resistance Data
    toku-e logo For a complete list of references, please visit antibiotics.toku-e.com Levofloxacin Microorganism Genus, Species, and Strain (if shown) Concentration Range (μg/ml)Susceptibility and Aeromonas spp. 0.0625 Minimum Inhibitory Alcaligenes faecalis 0.39 - 25 Bacillus circulans Concentration0.25 - 8 (MIC) Data Bacillus subtilis (ATCC 6051) 6.25 Issue date 01/06/2020 Bacteroides capillosus ≤0.06 - >8 Bacteroides distasonis 0.5 - 128 Bacteroides eggerthii 4 Bacteroides fragilis 0.5 - 128 Bacteroides merdae 0.25 - >32 Bacteroides ovatus 0.25 - 256 Bacteroides thetaiotaomicron 1 - 256 Bacteroides uniformis 4 - 128 Bacteroides ureolyticus ≤0.06 - >8 Bacteroides vulgatus 1 - 256 Bifidobacterium adolescentis 0.25 - >32 Bifidobacterium bifidum 8 Bifidobacterium breve 0.25 - 8 Bifidobacterium longum 0.25 - 8 Bifidobacterium pseudolongum 8 Bifidobacterium sp. 0.25 - >32 Bilophila wadsworthia 0.25 - 16 Brevibacterium spp. 0.12 - 8 Brucella melitensis 0.5 Burkholderia cepacia 0.25 - 512 Campylobacter coli 0.015 - 128 Campylobacter concisus ≤0.06 - >8 Campylobacter gracilis ≤0.06 - >8 Campylobacter jejuni 0.015 - 128 Campylobacter mucosalis ≤0.06 - >8 Campylobacter rectus ≤0.06 - >8 Campylobacter showae ≤0.06 - >8 Campylobacter spp. 0.25 Campylobacter sputorum ≤0.06 - >8 Capnocytophaga ochracea ≤0.06 - >8 Capnocytophaga spp. 0.006 - 2 Chlamydia pneumonia 0.125 - 1 Chlamydia psittaci 0.5 Chlamydia trachomatis 0.12 - 1 Chlamydophila pneumonia 0.5 Citrobacter diversus 0.015 - 0.125 Citrobacter freundii ≤0.00625 - >64 Citrobacter koseri 0.015 -
    [Show full text]
  • Aquascreen® Legionella Species Qpcr Detection Kit
    AquaScreen® Legionella species qPCR Detection Kit INSTRUCTIONS FOR USE FOR USE IN RESEARCH AND QUALITY CONTROL Symbols Lot No. Cat. No. Expiry date Storage temperature Number of reactions Manufacturer INDICATION The AquaScreen® Legionella species qPCR Detection kit is specifically designed for the quantitative detection of several Legionella species in water samples prepared with the AquaScreen® FastExt- ract kit. Its design complies with the requirements of AFNOR T90-471 and ISO/TS 12869:2012. Legionella are ubiquitous bacteria in surface water and moist soil, where they parasitize protozoa. The optimal growth temperature lies between +15 and +45 °C, whereas these gram-negative bacteria are dormant below 20 °C and do not survive above 60 °C. Importantly, Legionella are well-known as opportunistic intracellular human pathogens causing Legionnaires’ disease and Pontiac fever. The transmission occurs through inhalation of contami- nated aerosols generated by an infected source (e.g. human-made water systems like shower- heads, sink faucets, heaters, cooling towers, and many more). In order to efficiently prevent Legionella outbreaks, water safety control measures need syste- matic application but also reliable validation by fast Legionella testing. TEST PRINCIPLE The AquaScreen® Legionella species Kit uses qPCR for quantitative detection of legionella in wa- ter samples. In contrast to more time-consuming culture-based methods, AquaScreen® assays need less than six hours including sample preparation and qPCR to reliably detect Legionella. Moreover, the AquaScreen® qPCR assay has proven excellent performance in terms of specificity and sensitivity: other bacterial genera remain undetected whereas linear quantification is obtai- ned up to 1 x 106 particles per sample, therefore requiring no material dilution.
    [Show full text]