CHAPTER ONE INTRODUCTION 1.1 Background of Study Environment
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Evolutionary Genomics of Conjugative Elements and Integrons
Université Paris Descartes École doctorale Interdisciplinaire Européenne 474 Frontières du Vivant Microbial Evolutionary Genomic, Pasteur Institute Evolutionary genomics of conjugative elements and integrons Thèse de doctorat en Biologie Interdisciplinaire Présentée par Jean Cury Pour obtenir le grade de Docteur de l’Université Paris Descartes Sous la direction de Eduardo Rocha Soutenue publiquement le 17 Novembre 2017, devant un jury composé de: Claudine MÉDIGUE Rapporteure CNRS, Genoscope, Évry Marie-Cécile PLOY Rapporteure Université de Limoges Érick DENAMUR Examinateur Université Paris Diderot, Paris Philippe LOPEZ Examinateur Université Pierre et Marie Curie, Paris Alan GROSSMAN Examinateur MIT, Cambdridge, USA Eduardo ROCHA Directeur de thèse CNRS, Institut Pasteur, Paris ِ عمحمود ُبدرويش َالنرد َم ْن انا ِٔ َقول ُلك ْم ما ا ُقول ُلك ْم ؟ وانا لم أ ُك ْن َ َج ًرا َص َق َل ْت ُه ُالمياه َفأ ْص َب َح ِوهاً و َق َصباً َثق َب ْت ُه ُالرياح َفأ ْص َب َح ًنايا ... انا ِع ُب َالن ْرد ، ا َرب ُح يناً وا َس ُر يناً انا ِم ُثل ُك ْم ا وا قل قليً ... The dice player Mahmoud Darwish Who am I to say to you what I am saying to you? I was not a stone polished by water and became a face nor was I a cane punctured by the wind and became a lute… I am a dice player, Sometimes I win and sometimes I lose I am like you or slightly less… Contents Acknowledgments 7 Preamble 9 I Introduction 11 1 Background for friends and family . 13 2 Horizontal Gene Transfer (HGT) . 16 2.1 Mechanisms of horizontal gene transfer . -
Epidemiological and Molecular Analysis of Virulence and Antibiotic Resistance in Acinetobacter Baumannii
UNIVERSIDAD COMPLUTENSE DE MADRID FACULTAD DE VETERINARIA DEPARTAMENTO DE BIOQUÍMICA Y BIOLOGÍA MOLECULAR IV TESIS DOCTORAL Epidemiological and Molecular Analysis of Virulence and Antibiotic Resistance in Acinetobacter baumannii Análisis Epidemiológico y Molecular de la Virulencia y la Antibiorresistencia en Acinetobacter baumannii MEMORIA PARA OPTAR AL GRADO DE DOCTOR PRESENTADA POR Elias Dahdouh DIRECTORA Mónica Suárez Rodríguez Madrid, 2017 © Elias Dahdouh, 2016 UNIVERSIDAD COMPLUTENSE DE MADRID FACULTAD DE VETERINARIA DEPARTAMENTO DE BIOQUIMICA Y BIOLOGIA MOLECULAR IV TESIS DOCTORAL Análisis Epidemiológico y Molecular de la Virulencia y la Antibiorresistencia en Acinetobacter baumannii Epidemiological and Molecular Analysis of Virulence and Antibiotic Resistance in Acinetobacter baumannii MEMORIA PARA OPTAR AL GRADO DE DOCTOR PRESENTADA POR Elias Dahdouh Directora Mónica Suárez Rodríguez Madrid, 2016 UNIVERSIDAD COMPLUTENSE DE MADRID FACULTAD DE VETERINARIA Departamento de Bioquímica y Biología Molecular IV ANALYSIS EPIDEMIOLOGICO Y MOLECULAR DE LA VIRULENCIA Y LA ANTIBIORRESISTENCIA EN Acinetobacter baumannii EPIDEMIOLOGICAL AND MOLECULAR ANALYSIS OF VIRULENCE AND ANTIBIOTIC RESISTANCE IN Acinetobacter baumannii MEMORIA PARA OPTAR AL GRADO DE DOCTOR PRESENTADA POR Elias Dahdouh Bajo la dirección de la doctora Mónica Suárez Rodríguez Madrid, Diciembre de 2016 First and foremost, I would like to thank God for the continued strength and determination that He has given me. I would also like to thank my father Abdo, my brother Charbel, my fiancée, Marisa, and all my friends for their endless support and for standing by me at all times. Moreover, I would like to thank Dra. Monica Suarez Rodriguez and Dr. Ziad Daoud for giving me the opportunity to complete this doctoral study and for their guidance, encouragement, and friendship. -
Summary Report of Freshwater Nonindigenous Aquatic Species in U.S
Summary Report of Freshwater Nonindigenous Aquatic Species in U.S. Fish and Wildlife Service Region 4—An Update April 2013 Prepared by: Pam L. Fuller, Amy J. Benson, and Matthew J. Cannister U.S. Geological Survey Southeast Ecological Science Center Gainesville, Florida Prepared for: U.S. Fish and Wildlife Service Southeast Region Atlanta, Georgia Cover Photos: Silver Carp, Hypophthalmichthys molitrix – Auburn University Giant Applesnail, Pomacea maculata – David Knott Straightedge Crayfish, Procambarus hayi – U.S. Forest Service i Table of Contents Table of Contents ...................................................................................................................................... ii List of Figures ............................................................................................................................................ v List of Tables ............................................................................................................................................ vi INTRODUCTION ............................................................................................................................................. 1 Overview of Region 4 Introductions Since 2000 ....................................................................................... 1 Format of Species Accounts ...................................................................................................................... 2 Explanation of Maps ................................................................................................................................ -
Eighty-Second Annual Mississippi Academy of Sciences Meeting
EIGHTY-SECOND ANNUAL MISSISSIPPI ACADEMY OF SCIENCES MEETING February 22-23, 2018 The University of Southern Mississippi Thad Cochran Center, Hattiesburg, Miss Sponsored by: Annual Meeting Sponsor Mississippi Academy of Sciences Sponsors University of Mississippi Medical Center, School of Health Related Professionals The University of Southern Mississippi Millsaps College Mississippi Academy of Sciences, Eighty-Second Annual Meeting Mississippi Academy of Sciences Volume 63 February 2018 Number 1 Table of Contents General Schedule 2 Conference Center Map 5 Academy Officers & Divisional Chairs 2015-16 7 Sustaining Members 8 Exhibitors 8 Life Members 10 Dodgen Lecturer, Plenary Speaker 13 HHMI/Millsaps Undergraduate Symposium 15 Mississippi INBRE Graduate Symposium 16 Divisional Symposia and Workshops 15 Overview of Divisional Programs 29 Agriculture & Plant Science 29 Cellular, Molecular & Developmental Biology 33 Chemistry & Chemical Engineering 41 Ecology & Evolutionary Biology 50 Geology & Geography 52 Health Sciences 56 History & Philosophy of Science 63 Marine & Atmospheric Sciences 65 Mathematics, Computer Science & Statistics 68 Physics & Engineering 70 Psychology & Social Sciences 74 Science Education 76 Zoology & Entomology 79 Editor: Michelle Tucci, University of Mississippi Medical Center Editorial Board: Gregorio Begonia, Jackson State University; Maria Begonia, Jackson State University; Ham Benghuzzi; University of Mississippi Medical Center; Ibrahim O. Farah, Jackson State University, Robin Rockhold, University of Mississippi Medical Center Program Editor: Kenneth Butler, University of Mississippi Medical Center The Journal of the Mississippi Academy of Sciences (ISSN 0076-9436) is pub-lished in January (annual meeting ab-stracts), April, July, and October, by the Mississippi Academy of Sciences. Members of the Academy receive the journal as part of their regular (non-student) membership. -
The History of Koi Aquaculture in Singapore from 1965 to the Present : Translating Translocated Scientific Knowledge from Japan Into Biosecurity
This document is downloaded from DR‑NTU (https://dr.ntu.edu.sg) Nanyang Technological University, Singapore. The history of Koi aquaculture in Singapore from 1965 to the present : translating translocated scientific knowledge from Japan into biosecurity Tan, Delfinn Sweimay 2018 Tan, D. S. (2018). The history of Koi aquaculture in Singapore from 1965 to the present : translating translocated scientific knowledge from Japan into biosecurity. Doctoral thesis, Nanyang Technological University, Singapore. https://hdl.handle.net/10356/87914 https://doi.org/10.32657/10220/45577 Downloaded on 30 Sep 2021 22:27:32 SGT The History of Koi Aquaculture in Singapore from 1965 to the Present: Translating Translocated Scientific Knowledge from Japan into Biosecurity Tan Delfinn Sweimay Interdisciplinary Graduate School NEWRI - Advanced Environmental Biotechnology Centre A thesis submitted to the Nanyang Technological University in partial fulfilment of the requirement for the degree of Doctor of Philosophy 2018 Acknowledgements First I would like to thank my supervisor, Prof Lisa Onaga, for giving me the opportunity to pursue this project under her supervision. This would never have been possible if it were not for her faith in me, her mentorship, and her patience, as well as her staunch belief in the possibilities of this project even as my own faith and strength faltered. She was the one who took a chance on me, even though I had no previous experience in this subject or field. To my TAC members, Prof Saidul Islam and Prof Ali Miserez, thank you for your support. I would also like to thank Professor Akihisa Setoguchi from Kyoto University, Japan, who hosted me during my research in Japan and helped mentor me, introduced me to people and provided support during my time in Japan. -
Identification, Molecular Epidemiology, and Antibiotic Resistance Characterization of Acinetobacter Spp
FACULTY OF HEALTH SCIENCES DEPARTMENT OF MEDICAL BIOLOGY UNIVERSITY HOSPITAL OF NORTH NORWAY DEPARTMENT OF MICROBIOLOGY AND INFECTION CONTROL REFERENCE CENTRE FOR DETECTION OF ANTIMICROBIAL RESISTANCE Identification, molecular epidemiology, and antibiotic resistance characterization of Acinetobacter spp. clinical isolates Nabil Karah A dissertation for the degree of Philosophiae Doctor June 2011 Acknowledgments The work presented in this thesis has been carried out between January 2009 and September 2011 at the Reference Centre for Detection of Antimicrobial Resistance (K-res), Department of Microbiology and Infection Control, University Hospital of North Norway (UNN); and the Research Group for Host–Microbe Interactions, Department of Medical Biology, Faculty of Health Sciences, University of Tromsø (UIT), Tromsø, Norway. I would like to express my deep and truthful acknowledgment to my main supervisor Ørjan Samuelsen. His understanding and encouraging supervision played a major role in the success of every experiment of my PhD project. Dear Ørjan, I am certainly very thankful for your indispensible contribution in all the four manuscripts. I am also very grateful to your comments, suggestions, and corrections on the present thesis. I am sincerely grateful to my co-supervisor Arnfinn Sundsfjord for his important contribution not only in my MSc study and my PhD study but also in my entire career as a “Medical Microbiologist”. I would also thank you Arnfinn for your nonstop support during my stay in Tromsø at a personal level. My sincere thanks are due to co-supervisors Kristin Hegstad and Gunnar Skov Simonsen for the valuable advice, productive comments, and friendly support. I would like to thank co-authors Christian G. -
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Research article Artemia as a sustainably cultured live feed for ornamental fish in zoological institutions with immunostimulant properties when bioencapsulated with spirulina Arthrospria platensis Shaun Wee1, Stacia Loong2, Nathaniel S.R. Ng1 and Francis Cabana1 1Wildlife Reserves Singapore, 80 Mandai Lake Road, 729826, Singapore 2Temasek Polytechnic, 21 Tampines Ave 1, 529757, Singapore JZAR Research article Research JZAR Correspondence: Dr Francis Cabana, email; [email protected] Keywords: diet; functional feeds; Abstract immunity; nutraceuticals; nutrition; yeast Sustainable in-house cultures of bio-enriched live feeds for ornamental fish can enhance development, nutrition and welfare of the animal by improving immunity while further reducing economical costs to Article history: zoological institutions.Artemia is an easily harvestable feed with its nutritional profile highly dependent Received: 09 Jun 2020 on its diet which is easily manipulated through bioencapsulation. This study evaluates the effects of Accepted: 11 Mar 2021 two types of commonly used feeds for Artemia: spirulina and yeast, and how this affects the growth, Published online: 30 Apr feed conversion ratio (FCR), survival rate, immunity and colour intensity of ornamental fish, compared to a commercial pellet (control) diet. A total of 198 mature, mixed sex serpae tetra Hyphessobrycon eques were subjected to the three different diet treatments conducted in duplicate. There was no significant difference in growth weight, FCR, lysozyme, myeloperoxidase and alkaline phosphatase between treatments. Protease index of activity was significantly lower in fish fed with Artemia bio- enriched with spirulina (71.48%) and highest in the control diet (95.48%). The colour intensity and redness of the fish also significantly increased when fed Artemia bio-enriched with spirulina versus Artemia bio-enriched with yeast or a control diet. -
Spawning Behavior, Egg Development, Larvae and Juvenile Morphology of Hyphessobrycon Eques (Pisces: Characidae) Characidae Fishes
Dev. Reprod. Vol. 18, No. 4, 241~249, December, 2014 http://dx.doi.org/10.12717/DR.2014.18.4.241 ISSN 1226-6752 (Print) ISSN 2287-7967 (Online) Spawning Behavior, Egg Development, Larvae and Juvenile Morphology of Hyphessobrycon eques (Pisces: Characidae) Characidae Fishes Jae-Min Park1, Na-Ri Kim1, Kyeong-Ho Han1, Ji-Hyeong Han1, Maeng-Hyun Son2 and †Jae-Kwon Cho2 1Dept. of Aqualife Science, Chonnam National University, Yeosu 550-749, Korea 2Southwest Sea Fisheries Research Institute, National Fisheries Research and Development Institute, Aquaculture Industry Division, NFRDI, Yeosu 556-823, Korea ABSTRACT : Hyphessobrycon eques is a famous fish for ornamental fish market and aquarium. They are inhabit in regions of Amazon and Paraguay River basin. Serpae fishs were investigated 2–3 males are chased to female, and then males attempted to simulate the females abdomen. After fertilization, eggs were kept in incubators at 28oC. The fertilized eggs had adhesive and demesal characteristics and had a mean diameter of 0.92 ± 0.01 mm. Larvae hatched at 16 hrs post fertilization. The hatched larvae averaged 2.90 ± 0.16 mm in total length (LT). Complete yolk sac resorption and mouth opening occurred on the third day post hatching. At 45 days post hatching, the larvae were 12.5 ± 1.60 mm LT and had reached the juvenile stage. Key words : Egg development, Hyphessobrycon eques, Juvenile, Larvae, Spawning behavior INTRODUCTION the anal fin. Their body color is bright green or red and female fishes are bigger and have abdominal inflation than Hyphessobrycon eques is a teleost belongs to the Cha- male. -
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SUPPLEMENTARY DATA Characterization of microbial communities associated with ceramic raw materials as potential contributors for the improvement of ceramic rheological properties Angela M. Garcia-Sanchez 1, Bernardino Machado-Moreira 2, Mário Freire 3, Ricardo Santos 3, Sílvia Monteiro 3, Diamantino Dias 4, Orquídia Neves 2, Amélia Dionísio 2 and Ana Z. Miller 5* 1 Department of Microbiology and Parasitology, Faculty of Pharmacy, University of Seville. Profesor García González 2, 41012 Seville, Spain; 2 CERENA, Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais, 1, 1049-001, Lisboa, Portugal; 3 Laboratorio de Análises do Instituto Superior Técnico, Universidade de Lisboa, Av. Rovisco Pais 1, 1049-001 Lisboa, Portugal; 4 Rauschert Portuguesa, SA., Estrada Nacional 249-4, Trajouce, 2785-653 São Domingos de Rana, Portugal; 5 Instituto de Recursos Naturales y Agrobiologia de Sevilla (IRNAS-CSIC), Av. Reina Mercedes 10, 41012 Sevilla, Spain; 6 HERCULES Laboratory, University of Évora, Largo Marquês de Marialva 8, 7000-809 Évora, Portugal. * Correspondence: [email protected] The Supplementary data include: Figure S1. Rarefaction curves. Table S1. Phylogenetic affiliations of the 16S rRNA gene sequences of total bacteria obtained from sample 1A (74 sequences, 64 OTUs). Table S2. Phylogenetic affiliations of the 16S rRNA gene sequences of total bacteria obtained from sample 2B (69 sequences, 51 OTUs). Table S3. Phylogenetic affiliations of the 16S rRNA gene sequences of total bacteria obtained from sample 4D (80 sequences, 54 OTUs). Table S4. Phylogenetic affiliations of the 16S rRNA gene sequences of total bacteria obtained from sample 6F (86 sequences, 38 OTUs). Table S5. Phylogenetic affiliations of the 16S rRNA gene sequences of total bacteria obtained from sample 7G (79 sequences, 48 OTUs). -
Evolution of Acinetobacter Baumannii Infections and Antimicrobial Resistance
Central European Journal of Clinical Research Volume 2, Issue 1, Pages 28-36 DOI: 10.2478/cejcr-2019-0005 REVIEW Evolution of Acinetobacter baumannii infections and antimicrobial resistance. A review Sonia Elena Popovici1, Ovidiu Horea Bedreag2, Dorel Sandesc2 1“Pius Branzeu” Emergency County Hospital, Timisoara, Romania 2 Faculty of Medicine, “Victor Babes” Univeristy of Medicine and Pharmacy, Timisoara, Romania Correspondence to: Sonia Elena Popovici, MD Clinic of Anesthesia and Intensive Care “Pius Branzeu” Emergency County Hospital, Timisoara, Romania, Bulevardul Liviu Rebreanu, Nr. 156, Cod 300723, Timișoara E-mail: [email protected] Conflicts of interests Nothing to declare Acknowledgment None Funding: This research did not receive any specific grant from funding agencies in the public, commercial or not-for profit sectors. Keywords: Acinetobacter baumannii, hospital-acquired, antimicrobial resistance. These authors take responsibility for all aspects of the reliability and freedom from bias of the data presented and their discussed interpretation. Central Eur J Clin Res 2019;2(1):28-36 _________________________________________________________________________________ Received: 12.12.2018, Accepted: 15.01.2019, Published: 25.03.2019 Copyright © 2018 Central European Journal of Clinical Research. This is an open-access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. in the hospital environment and the multitude of transmission possibilities raises serious issues Abstract regarding the management of these complex in- fections. The future lies in developing new and The emergence of multi-drug resistant targeted methods for the early diagnosis of A. Acinetobacter spp involved in hospital-acquired baumannii, as well as in the judicious use of an- infections, once considered an easily treatable timicrobial drugs. -
Successful Pathogen : Emergence of a Acinetobacter Baumannii
Acinetobacter baumannii: Emergence of a Successful Pathogen Anton Y. Peleg, Harald Seifert and David L. Paterson Clin. Microbiol. Rev. 2008, 21(3):538. DOI: 10.1128/CMR.00058-07. Downloaded from Updated information and services can be found at: http://cmr.asm.org/content/21/3/538 These include: http://cmr.asm.org/ REFERENCES This article cites 610 articles, 321 of which can be accessed free at: http://cmr.asm.org/content/21/3/538#ref-list-1 CONTENT ALERTS Receive: RSS Feeds, eTOCs, free email alerts (when new articles cite this article), more» on November 25, 2011 by CONSOL.CAPES-T299093 Information about commercial reprint orders: http://cmr.asm.org/site/misc/reprints.xhtml To subscribe to to another ASM Journal go to: http://journals.asm.org/site/subscriptions/ CLINICAL MICROBIOLOGY REVIEWS, July 2008, p. 538–582 Vol. 21, No. 3 0893-8512/08/$08.00ϩ0 doi:10.1128/CMR.00058-07 Copyright © 2008, American Society for Microbiology. All Rights Reserved. Acinetobacter baumannii: Emergence of a Successful Pathogen Anton Y. Peleg,1* Harald Seifert,2 and David L. Paterson3,4,5 Beth Israel Deaconess Medical Center and Harvard Medical School, Boston, Massachusetts1; Institute for Medical Microbiology, Immunology and Hygiene, University of Cologne, Goldenfelsstrasse 19-21, 50935 Cologne, Germany2; University of Queensland, Royal Brisbane and Women’s Hospital, Brisbane, Queensland, Australia3; Pathology Queensland, Brisbane, Queensland, 4 5 Australia ; and Division of Infectious Diseases, University of Pittsburgh School of Medicine, Pittsburgh, Pennsylvania -
Characteristics of Bacterial Community in Cloud Water at Mt Tai: Similarity and Disparity Under Polluted and Non-Polluted Cloud Episodes
Atmos. Chem. Phys., 17, 5253–5270, 2017 www.atmos-chem-phys.net/17/5253/2017/ doi:10.5194/acp-17-5253-2017 © Author(s) 2017. CC Attribution 3.0 License. Characteristics of bacterial community in cloud water at Mt Tai: similarity and disparity under polluted and non-polluted cloud episodes Min Wei1, Caihong Xu1, Jianmin Chen1,2, Chao Zhu1, Jiarong Li1, and Ganglin Lv1 1Environment Research Institute, School of Environmental Science and Engineering, Shandong University, Jinan 250100, China 2Shanghai Key Laboratory of Atmospheric Particle Pollution and Prevention (LAP), Fudan Tyndall Centre, Department of Environmental Science & Engineering, Fudan University, Shanghai 200433, China Correspondence to: Jianmin Chen ([email protected]) Received: 29 August 2016 – Discussion started: 20 September 2016 Revised: 10 March 2017 – Accepted: 19 March 2017 – Published: 24 April 2017 Abstract. Bacteria are widely distributed in atmospheric pal coordinate analysis (PCoA) indicated a significant dis- aerosols and are indispensable components of clouds, play- parity between polluted and non-polluted samples. Linear ing an important role in the atmospheric hydrological cycle. discriminant analysis effect size (LEfSe) demonstrated that However, limited information is available about the bacte- potential pathogens were enriched in the polluted cloud sam- rial community structure and function, especially for the in- ples, whereas the diverse ecological function groups were creasing air pollution in the North China Plain. Here, we significant in the non-polluted samples. Discrepant commu- present a comprehensive characterization of bacterial com- nity structure determined by redundancy analysis (RDA) in- munity composition, function, variation, and environmental dicated that the major ions in cloud water and PM2:5 in the influence for cloud water collected at Mt Tai from 24 July atmosphere have a negative impact on bacteria, playing a vi- to 23 August 2014.