Tibial Osteomyelitis: a Case Report of Hyalohyphomycosis
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Entomopathogenic Fungi and Bacteria in a Veterinary Perspective
biology Review Entomopathogenic Fungi and Bacteria in a Veterinary Perspective Valentina Virginia Ebani 1,2,* and Francesca Mancianti 1,2 1 Department of Veterinary Sciences, University of Pisa, viale delle Piagge 2, 56124 Pisa, Italy; [email protected] 2 Interdepartmental Research Center “Nutraceuticals and Food for Health”, University of Pisa, via del Borghetto 80, 56124 Pisa, Italy * Correspondence: [email protected]; Tel.: +39-050-221-6968 Simple Summary: Several fungal species are well suited to control arthropods, being able to cause epizootic infection among them and most of them infect their host by direct penetration through the arthropod’s tegument. Most of organisms are related to the biological control of crop pests, but, more recently, have been applied to combat some livestock ectoparasites. Among the entomopathogenic bacteria, Bacillus thuringiensis, innocuous for humans, animals, and plants and isolated from different environments, showed the most relevant activity against arthropods. Its entomopathogenic property is related to the production of highly biodegradable proteins. Entomopathogenic fungi and bacteria are usually employed against agricultural pests, and some studies have focused on their use to control animal arthropods. However, risks of infections in animals and humans are possible; thus, further studies about their activity are necessary. Abstract: The present study aimed to review the papers dealing with the biological activity of fungi and bacteria against some mites and ticks of veterinary interest. In particular, the attention was turned to the research regarding acarid species, Dermanyssus gallinae and Psoroptes sp., which are the cause of severe threat in farm animals and, regarding ticks, also pets. -
De Novo Assembly and Genome Analyses of the Marine-Derived
De Novo Assembly and Genome Analyses of the Marine-Derived Scopulariopsis brevicaulis Strain LF580 Unravels Life-Style Traits and Anticancerous Scopularide Biosynthetic Gene Cluster Abhishek Kumar, Bernard Henrissat, Mikko Arvas, Muhammad Fahad Syed, Nils Thieme, J. Philipp Benz, Jens Laurids Sorensen, Eric Record, Stefanie Poeggeler, Frank Kempken To cite this version: Abhishek Kumar, Bernard Henrissat, Mikko Arvas, Muhammad Fahad Syed, Nils Thieme, et al.. De Novo Assembly and Genome Analyses of the Marine-Derived Scopulariopsis brevicaulis Strain LF580 Unravels Life-Style Traits and Anticancerous Scopularide Biosynthetic Gene Cluster. PLoS ONE, Public Library of Science, 2015, 10 (10), 10.1371/journal.pone.0140398. hal-01439026 HAL Id: hal-01439026 https://hal.archives-ouvertes.fr/hal-01439026 Submitted on 17 Sep 2018 HAL is a multi-disciplinary open access L’archive ouverte pluridisciplinaire HAL, est archive for the deposit and dissemination of sci- destinée au dépôt et à la diffusion de documents entific research documents, whether they are pub- scientifiques de niveau recherche, publiés ou non, lished or not. The documents may come from émanant des établissements d’enseignement et de teaching and research institutions in France or recherche français ou étrangers, des laboratoires abroad, or from public or private research centers. publics ou privés. Distributed under a Creative Commons Attribution| 4.0 International License RESEARCH ARTICLE De Novo Assembly and Genome Analyses of the Marine-Derived Scopulariopsis brevicaulis Strain -
Isolation of Scopulariopsis Brevicaulis from Wistar Rats
Etlik Vet Mikrobiyol Derg, 2020; 31 (2): 196-200 Case Report doi: https://doi.org/10.35864/evmd.768818 Olgu Sunumu Case report: Isolation of Scopulariopsis brevicaulis from Wistar Rats Özlem Şahan Yapıcıer1* , Mehmet Kaya2 , Zeki Erol3 , Dilek Öztürk4 1,2,4 Faculty of Veterinary Medicine, Mehmet Akif Ersoy University, Department of Microbiology, Burdur, TURKEY 3 Mehmet Akif Ersoy University, Experimental Animal Production and Experimental Research Center, Burdur, TURKEY Geliş Tarihi / Received: 13.07.2020, Kabul tarihi / Accepted: 07.12.2020 Abstract: Scopulariopsis brevicaulis is a saprophytic fungus that has wide geographic distribution. This study de- scribes a case of hair loss and skin lesions observed in male and female Wistar rats due to Scopulariopsis brevicaulis infection in Turkey. Skin scrapings and hair samples from three male and two female rats were provided by the Experimental Animal Production and Experimental Research Center of Mehmet Akif Ersoy University to the Faculty of Veterinary Medicine, Department of Microbiology Laboratory in Burdur for analysis in July 2019. Microbiological methods were used for species identification andScopulariopsis brevicaulis was isolated from all of the samples. The rats completely recovered without treatment and had no recurrence of clinical signs at one month post-sampling. This study is the first report ofS. brevicaulis causing an infection in Wistar rats in Turkey. Keywords: Laboratory animals, mycological examination, rats, saprophyte, Scopulariopsis sp Olgu sunumu: Wistar Ratlarından Scopulariopsis brevicularis izolasyonu Özet: Scopulariopsis brevicaulis, geniş coğrafi dağılımı olan saprofitik bir mantardır. Bu olgu, Türkiye’deki erkek ve dişi Wistar ratlarında Scopulariopsis brevicaulis infeksiyonuna bağlı olarak gözlenen tüy kaybı ve deri lezyonlarını tanımlamaktadır. -
Redefining Microascus, Scopulariopsis and Allied Genera
Persoonia 36, 2016: 1–36 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158516X688027 Redefining Microascus, Scopulariopsis and allied genera M. Sandoval-Denis1, J. Gené1, D.A. Sutton2, J.F. Cano-Lira1, G.S. de Hoog3, C.A. Decock4, N.P. Wiederhold 2, J. Guarro1 Key words Abstract The genera Microascus and Scopulariopsis comprise species commonly isolated from soil, decaying plant material and indoor environments. A few species are also recognised as opportunistic pathogens of insects Ascomycota and animals, including humans. In the past, the taxonomy of these fungi has been based on morphology only. With Microascaceae the aim to clarify the taxonomy and phylogeny of these fungi, we studied a large set of clinical and environmental Microascales isolates, including the available ex-type strains of numerous species, by means of morphological, physiological and multigene phylogeny molecular analyses. Species delineation was assessed under the Genealogical Phylogenetic Species Recogni- taxonomy tion (GCPSR) criterion using DNA sequence data of four loci (ITS region, and fragments of rDNA LSU, translation elongation factor 1-α and β-tubulin). The genera Microascus and Scopulariopsis were found to be separated in two distinct lineages. The genus Pithoascus is reinstated and the new genus Pseudoscopulariopsis is erected, typified by P. schumacheri. Seven new species of Microascus and one of Scopulariopsis are described, namely M. alveolaris, M. brunneosporus, M. campaniformis, M. expansus, M. intricatus, M. restrictus, M. verrucosus and Scopulariopsis cordiae. Microascus trigonosporus var. macrosporus is accepted as a species distinct from M. tri go nosporus. Nine new combinations are introduced. Microascus cinereus, M. -
An Overview of the Systematics of the Sordariomycetes Based on a Four-Gene Phylogeny
Mycologia, 98(6), 2006, pp. 1076–1087. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 An overview of the systematics of the Sordariomycetes based on a four-gene phylogeny Ning Zhang of 16 in the Sordariomycetes was investigated based Department of Plant Pathology, NYSAES, Cornell on four nuclear loci (nSSU and nLSU rDNA, TEF and University, Geneva, New York 14456 RPB2), using three species of the Leotiomycetes as Lisa A. Castlebury outgroups. Three subclasses (i.e. Hypocreomycetidae, Systematic Botany & Mycology Laboratory, USDA-ARS, Sordariomycetidae and Xylariomycetidae) currently Beltsville, Maryland 20705 recognized in the classification are well supported with the placement of the Lulworthiales in either Andrew N. Miller a basal group of the Sordariomycetes or a sister group Center for Biodiversity, Illinois Natural History Survey, of the Hypocreomycetidae. Except for the Micro- Champaign, Illinois 61820 ascales, our results recognize most of the orders as Sabine M. Huhndorf monophyletic groups. Melanospora species form Department of Botany, The Field Museum of Natural a clade outside of the Hypocreales and are recognized History, Chicago, Illinois 60605 as a distinct order in the Hypocreomycetidae. Conrad L. Schoch Glomerellaceae is excluded from the Phyllachorales Department of Botany and Plant Pathology, Oregon and placed in Hypocreomycetidae incertae sedis. In State University, Corvallis, Oregon 97331 the Sordariomycetidae, the Sordariales is a strongly supported clade and occurs within a well supported Keith A. Seifert clade containing the Boliniales and Chaetosphaer- Biodiversity (Mycology and Botany), Agriculture and iales. Aspects of morphology, ecology and evolution Agri-Food Canada, Ottawa, Ontario, K1A 0C6 Canada are discussed. Amy Y. -
An Overview of the Systematics of the Sordariomycetes Based on a Four-Gene Phylogeny
Mycologia, 98(6), 2006, pp. 1076–1087. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 An overview of the systematics of the Sordariomycetes based on a four-gene phylogeny Ning Zhang of 16 in the Sordariomycetes was investigated based Department of Plant Pathology, NYSAES, Cornell on four nuclear loci (nSSU and nLSU rDNA, TEF and University, Geneva, New York 14456 RPB2), using three species of the Leotiomycetes as Lisa A. Castlebury outgroups. Three subclasses (i.e. Hypocreomycetidae, Systematic Botany & Mycology Laboratory, USDA-ARS, Sordariomycetidae and Xylariomycetidae) currently Beltsville, Maryland 20705 recognized in the classification are well supported with the placement of the Lulworthiales in either Andrew N. Miller a basal group of the Sordariomycetes or a sister group Center for Biodiversity, Illinois Natural History Survey, of the Hypocreomycetidae. Except for the Micro- Champaign, Illinois 61820 ascales, our results recognize most of the orders as Sabine M. Huhndorf monophyletic groups. Melanospora species form Department of Botany, The Field Museum of Natural a clade outside of the Hypocreales and are recognized History, Chicago, Illinois 60605 as a distinct order in the Hypocreomycetidae. Conrad L. Schoch Glomerellaceae is excluded from the Phyllachorales Department of Botany and Plant Pathology, Oregon and placed in Hypocreomycetidae incertae sedis. In State University, Corvallis, Oregon 97331 the Sordariomycetidae, the Sordariales is a strongly supported clade and occurs within a well supported Keith A. Seifert clade containing the Boliniales and Chaetosphaer- Biodiversity (Mycology and Botany), Agriculture and iales. Aspects of morphology, ecology and evolution Agri-Food Canada, Ottawa, Ontario, K1A 0C6 Canada are discussed. Amy Y. -
00 PHD Beta 10
Identification and control of fungal contamination in ancient heritage documents Nuno Miguel da Costa Pinheiro Meneses Mesquita Setembro 2013 Dissertação apresentada à Universidade de Coimbra para a obtenção do grau de Doutor em Biologia, especialidade em Biologia Molecular, realizada sob a orientação científica do Professor Doutor António Manuel Santos Carriço Portugal e co-orientação da Professora Doutora Helena Maria de Oliveira Freitas do Departamento de Ciências da Vida da Faculdade de Ciências e Tecnologia da Universidade de Coimbra. This research was funded by Fundação para a Ciência e a Tecnologia (FCT) and the European Social Fund through the Programa Operacional Potencial Humano (POPH) of the National Strategic Reference Network, with the reference SFRH/BD/41287/2007. This work was also funded by Fundo Europeu de Desenvolvimento Regional (FEDER) through the Programa Operacional Fatores de Competitividade (POFC-COMPETE) and national funds, through FCT under the project with the reference PTDC/HAH/65262/2006. Acknowledgements To Fundação para a Ciência e a Tecnologia for sponsoring this work with a PhD grant (SFRH/BD/41287/2007). To my supervisor, Professor António Portugal, for his trust in having me as a PhD student; for his friendship, advice and utmost support in so many different matters. To Professor Helena Freitas, my co-supervisor, for the open-minded ideas and advice. To the Centre for Functional Ecology of the University of Coimbra, for allowing me to perform and develop my thesis. To Professor Teresa Gonçalves, for all the interesting conversations and support. To João Loureiro for his support and advice during the flow cytometry experiences. To my lab partners, in alphabetical order (to prevent malicious sample contaminations in the future): Diana, Elisa, Gabriela, Helena, Hugo, John, Sandra, Susana and Trovão. -
Especies Clínicas Comunes Del Género Scopulariopsis Bainier Y Taxas
Bol. Micol. 2015; 30(1): 27 - 33 TAXONOMÍA Especies clínicas comunes del género Scopulariopsis Bainier y taxas relacionados (Common clinical species of the Scopulariopsis Bainier genera and related taxa) Eduardo Piontelli, L Prof. Emérito Cátedra de Micología, Universidad de Valparaíso Casilla 92V Valparaíso (Chile). RESUMEN ABSTRACT Los integrantes del género Microascus y su anamorfo Members of the genus Microascus and their anamorph Scopulariopsis, incluyen especies fúngicas comunes del sue- Scopulariopsis, include common fungal species of soil, lo, excrementos, ambientes internos y algunas reconocidas droppings, indoor environments and some recognized como oportunistas en los animales, incluyendo al hombre. La opportunistic in animals, including humans. The morphology sola morfología del género no siempre permite un buen diag- of the genus alone is not always sufficient for a proper diag- nóstico a pesar de su utilidad cuando se presentan los ana- nosis despite its usefulness when anamorphs or teleomorphs morfos o teleomorfos o ambos. Sin embargo, la biología or both are present. However, molecular biology has allowed molecular ha permitido el análisis de muchos aislados clíni- the analysis of many clinical isolates, contributing with new cos, contribuyendo con nuevos aportes y nuevas combina- imput and new taxonomic combinations in the current ciones taxonómicas en la literatura actual. Este trabajo, reune literature. This work brings together the latest on these gene- lo más actual sobre estos géneros comunes en salud pública, ra in pubblic health, providing a primary key for useful aportando claves morfofisiológicas útiles para su reconocimiento morphophysiological determination in clinical laboratory of primario en los laboratorios clínicos de baja complejidad. low complexity. -
Characterising Plant Pathogen Communities and Their Environmental Drivers at a National Scale
Lincoln University Digital Thesis Copyright Statement The digital copy of this thesis is protected by the Copyright Act 1994 (New Zealand). This thesis may be consulted by you, provided you comply with the provisions of the Act and the following conditions of use: you will use the copy only for the purposes of research or private study you will recognise the author's right to be identified as the author of the thesis and due acknowledgement will be made to the author where appropriate you will obtain the author's permission before publishing any material from the thesis. Characterising plant pathogen communities and their environmental drivers at a national scale A thesis submitted in partial fulfilment of the requirements for the Degree of Doctor of Philosophy at Lincoln University by Andreas Makiola Lincoln University, New Zealand 2019 General abstract Plant pathogens play a critical role for global food security, conservation of natural ecosystems and future resilience and sustainability of ecosystem services in general. Thus, it is crucial to understand the large-scale processes that shape plant pathogen communities. The recent drop in DNA sequencing costs offers, for the first time, the opportunity to study multiple plant pathogens simultaneously in their naturally occurring environment effectively at large scale. In this thesis, my aims were (1) to employ next-generation sequencing (NGS) based metabarcoding for the detection and identification of plant pathogens at the ecosystem scale in New Zealand, (2) to characterise plant pathogen communities, and (3) to determine the environmental drivers of these communities. First, I investigated the suitability of NGS for the detection, identification and quantification of plant pathogens using rust fungi as a model system. -
Comparison of the Performance of ITS1 and ITS2 As Barcodes in Amplicon-Based Sequencing of Bioaerosols
Comparison of the performance of ITS1 and ITS2 as barcodes in amplicon-based sequencing of bioaerosols Hamza Mbareche1,3, Marc Veillette1, Guillaume Bilodeau2 and Caroline Duchaine1,3 1 Institut Universitaire de Cardiologie et de Pneumologie de Québec, Quebec City, Quebec, Canada 2 Canadian Food Inspection Agency, Pathogen Identification Research Lab, Ottawa, Canada 3 Département de biochimie, de microbiologie et de bio-informatique, Faculté des sciences et de génie, Université Laval, Quebec City, Canada ABSTRACT This paper presents the performance of two eukaryotic genomic ribosomal regions, ITS1 and ITS2, in describing fungal diversity in aerosol samples using amplicon-based High-Throughput Sequencing (HTS). Composting sites, biomethanization facilities, and dairy farms, all affected by the presence of fungi, were visited to collect air samples. The amplicon-based HTS approach is a target enrichment method that relies on the amplification of a specific target using particular primers before sequencing. Thus, the results are highly dependent on the quality of amplification. For this reason, the authors of this paper used a shotgun metagenomic approach to compare its outcome with the amplicon-based method. Indeed, shotgun metagenomic does not rely on any amplification prior to sequencing, because all genes are sequenced without a specific target. In addition, culture methods were added to the analyses in biomethanization and dairy farms samples to validate their contribution to fungal diversity of aerosols. The results obtained are unequivocal towards ITS1 outperformance to ITS2 in terms of richness, and taxonomic coverage. The differential abundance analysis did demonstrate that some taxa were exclusively detected only by ITS2, and vice-versa for ITS1. -
Product: 366 - Molds, Rusts and Smuts, Absidia Ramosa
Product: 366 - Molds, Rusts and Smuts, Absidia ramosa Manufacturers of this Product Antigen Laboratories, Inc. - Liberty, MO (Lic. No. 468, STN No. 102223) Search Strategy PubMed: absidia and hypersensitivity; absidia and allergy; absidia ramosa; absidia corymbifera allergy Google: absidia ramosa allergy; absidia ramosa allergy adverse; absidia ramosa allergen; absidia ramosa allergen adverse Nomenclature ATCC website: Absidia ramosa (Lindt) Lendner, teleomorph deposited as Tieghemella italiana (Costantin et Perin) Naumov, teleomorph. Stedmans Book (ATCC Fungus Names, 1993): Absidia corymbifera (Cohn) Saccardo et Trotter,1912. Index Fungorum website: Absidia ramosa (Zopf) Lendn., Mat. fl. crypt. Suisse 3(1): 144 (1908) & Lichtheimia ramosa (Zopf) Vuill., Bull. Soc. mycol. Fr. 19: 126 (1903). Parent Product 366 - Molds, Rusts and Smuts, Absidia ramosa Published Data No supportive data were identified. A. ramosais is an organism associated with mucormycosis and farmers' lung. These are hypersensitivity reactions and do not affect the safety of the extract. Panels: Original Panel Recommendation Reclassification Panel Recommendation Diagnosis: none none Therapy: none none Page 1 of 180 9/9/2011 Product: 367 - Molds, Rusts and Smuts, Achorion (Trichophyton) schoenleinii Recommended Scientific Name Trichophyton schoenleinii Manufacturers of this Product Antigen Laboratories, Inc. - Liberty, MO (Lic. No. 468, STN No. 102223) Search Strategy PubMed: trichophyton schoenleinii and allergy (or allergen); trichophyton schoenleinii Google: trichophyton schoenleinii allergy; trichophyton schoenleinii allergy adverse; trichophyton schoenleinii allergen; trichophyton schoenleinii allergen adverse Nomenclature ATCC website: Trichophyton schoenleinii (Lebert) Langeron et Milochevitch, anamorph deposited as Achorion schoenleinii Remak ex Gueguen, anamorph. Stedmans Book (ATCC Fungus Names, 1993): Trichophyton schoenleinii (Lebert) Langeron et Milochevitch Index Fungorum website: Trichophyton schoenleinii (Lebert) Langeron & Miloch. -
What Is the Fungal Diversity of Marine Ecosystems in Europe?
mycologist 20 (2006) 15– 21 available at www.sciencedirect.com journal homepage: www.elsevier.com/locate/mycol What is the Fungal Diversity of Marine Ecosystems in Europe? Eleanor T. LANDY*, Gerwyn M. JONES School of Biomedical and Molecular Sciences, University of Surrey, Guildford, Surrey, GU2 7XH, UK abstract Keywords: Diversity In 2001 the European Register of Marine Species 1.0 was published (Costello et al. 2001 and Europe http://erms.biol.soton.ac.uk/, and latterly: http://www.marbef.org/data/stats.php) [Costello Fungi MJ, Emblow C, White R, 2001. European register of marine species: a check list of the marine Marine species in Europe and a bibliography of guides to their identification. Collection Patrimoines Naturels 50, 463p.]. The lists of species (from fungi to mammals) were published as part of a European Union Concerted action project (funded by the European Union Marine Science and Technology (MAST) research programme) and the updated version (ERMS 2) is EU- funded through the Marine Biodiversity and Ecosystem Functioning (MARBEF) Framework project 6 Network of Excellence. Among these lists, a list of the fungi isolated and identified from coastal and marine ecosystems in Europe was included (Clipson et al. 2001) [Clipson NJW, Landy ET, Otte ML, 2001. Fungi. In@ Costelloe MJ, Emblow C, White R (eds), European register of marine species: a check-list of the marine species in Europe and a bibliography of guides to their identification. Collection Patrimoines Naturels 50: 15–19.]. This article deals with the results of compiling a new taxonomically correct and complete list of all fungi that have been reported occurring in European marine waters.