Irhom2 Controls the Substrate Selectivity of Stimulated ADAM17-Dependent Ectodomain Shedding
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Supplemental Information to Mammadova-Bach Et Al., “Laminin Α1 Orchestrates VEGFA Functions in the Ecosystem of Colorectal Carcinogenesis”
Supplemental information to Mammadova-Bach et al., “Laminin α1 orchestrates VEGFA functions in the ecosystem of colorectal carcinogenesis” Supplemental material and methods Cloning of the villin-LMα1 vector The plasmid pBS-villin-promoter containing the 3.5 Kb of the murine villin promoter, the first non coding exon, 5.5 kb of the first intron and 15 nucleotides of the second villin exon, was generated by S. Robine (Institut Curie, Paris, France). The EcoRI site in the multi cloning site was destroyed by fill in ligation with T4 polymerase according to the manufacturer`s instructions (New England Biolabs, Ozyme, Saint Quentin en Yvelines, France). Site directed mutagenesis (GeneEditor in vitro Site-Directed Mutagenesis system, Promega, Charbonnières-les-Bains, France) was then used to introduce a BsiWI site before the start codon of the villin coding sequence using the 5’ phosphorylated primer: 5’CCTTCTCCTCTAGGCTCGCGTACGATGACGTCGGACTTGCGG3’. A double strand annealed oligonucleotide, 5’GGCCGGACGCGTGAATTCGTCGACGC3’ and 5’GGCCGCGTCGACGAATTCACGC GTCC3’ containing restriction site for MluI, EcoRI and SalI were inserted in the NotI site (present in the multi cloning site), generating the plasmid pBS-villin-promoter-MES. The SV40 polyA region of the pEGFP plasmid (Clontech, Ozyme, Saint Quentin Yvelines, France) was amplified by PCR using primers 5’GGCGCCTCTAGATCATAATCAGCCATA3’ and 5’GGCGCCCTTAAGATACATTGATGAGTT3’ before subcloning into the pGEMTeasy vector (Promega, Charbonnières-les-Bains, France). After EcoRI digestion, the SV40 polyA fragment was purified with the NucleoSpin Extract II kit (Machery-Nagel, Hoerdt, France) and then subcloned into the EcoRI site of the plasmid pBS-villin-promoter-MES. Site directed mutagenesis was used to introduce a BsiWI site (5’ phosphorylated AGCGCAGGGAGCGGCGGCCGTACGATGCGCGGCAGCGGCACG3’) before the initiation codon and a MluI site (5’ phosphorylated 1 CCCGGGCCTGAGCCCTAAACGCGTGCCAGCCTCTGCCCTTGG3’) after the stop codon in the full length cDNA coding for the mouse LMα1 in the pCIS vector (kindly provided by P. -
Negatively Regulated by ADAM15 TRIF-Mediated TLR3 and TLR4
TRIF-Mediated TLR3 and TLR4 Signaling Is Negatively Regulated by ADAM15 Suaad Ahmed, Ashwini Maratha, Aisha Qasim Butt, Enda Shevlin and Sinead M. Miggin This information is current as of September 27, 2021. J Immunol 2013; 190:2217-2228; Prepublished online 30 January 2013; doi: 10.4049/jimmunol.1201630 http://www.jimmunol.org/content/190/5/2217 Downloaded from Supplementary http://www.jimmunol.org/content/suppl/2013/01/30/jimmunol.120163 Material 0.DC1 References This article cites 57 articles, 20 of which you can access for free at: http://www.jimmunol.org/ http://www.jimmunol.org/content/190/5/2217.full#ref-list-1 Why The JI? Submit online. • Rapid Reviews! 30 days* from submission to initial decision • No Triage! Every submission reviewed by practicing scientists by guest on September 27, 2021 • Fast Publication! 4 weeks from acceptance to publication *average Subscription Information about subscribing to The Journal of Immunology is online at: http://jimmunol.org/subscription Permissions Submit copyright permission requests at: http://www.aai.org/About/Publications/JI/copyright.html Email Alerts Receive free email-alerts when new articles cite this article. Sign up at: http://jimmunol.org/alerts The Journal of Immunology is published twice each month by The American Association of Immunologists, Inc., 1451 Rockville Pike, Suite 650, Rockville, MD 20852 Copyright © 2013 by The American Association of Immunologists, Inc. All rights reserved. Print ISSN: 0022-1767 Online ISSN: 1550-6606. The Journal of Immunology TRIF-Mediated TLR3 and TLR4 Signaling Is Negatively Regulated by ADAM15 Suaad Ahmed, Ashwini Maratha, Aisha Qasim Butt, Enda Shevlin, and Sinead M. -
Supplementary Table 1: Adhesion Genes Data Set
Supplementary Table 1: Adhesion genes data set PROBE Entrez Gene ID Celera Gene ID Gene_Symbol Gene_Name 160832 1 hCG201364.3 A1BG alpha-1-B glycoprotein 223658 1 hCG201364.3 A1BG alpha-1-B glycoprotein 212988 102 hCG40040.3 ADAM10 ADAM metallopeptidase domain 10 133411 4185 hCG28232.2 ADAM11 ADAM metallopeptidase domain 11 110695 8038 hCG40937.4 ADAM12 ADAM metallopeptidase domain 12 (meltrin alpha) 195222 8038 hCG40937.4 ADAM12 ADAM metallopeptidase domain 12 (meltrin alpha) 165344 8751 hCG20021.3 ADAM15 ADAM metallopeptidase domain 15 (metargidin) 189065 6868 null ADAM17 ADAM metallopeptidase domain 17 (tumor necrosis factor, alpha, converting enzyme) 108119 8728 hCG15398.4 ADAM19 ADAM metallopeptidase domain 19 (meltrin beta) 117763 8748 hCG20675.3 ADAM20 ADAM metallopeptidase domain 20 126448 8747 hCG1785634.2 ADAM21 ADAM metallopeptidase domain 21 208981 8747 hCG1785634.2|hCG2042897 ADAM21 ADAM metallopeptidase domain 21 180903 53616 hCG17212.4 ADAM22 ADAM metallopeptidase domain 22 177272 8745 hCG1811623.1 ADAM23 ADAM metallopeptidase domain 23 102384 10863 hCG1818505.1 ADAM28 ADAM metallopeptidase domain 28 119968 11086 hCG1786734.2 ADAM29 ADAM metallopeptidase domain 29 205542 11085 hCG1997196.1 ADAM30 ADAM metallopeptidase domain 30 148417 80332 hCG39255.4 ADAM33 ADAM metallopeptidase domain 33 140492 8756 hCG1789002.2 ADAM7 ADAM metallopeptidase domain 7 122603 101 hCG1816947.1 ADAM8 ADAM metallopeptidase domain 8 183965 8754 hCG1996391 ADAM9 ADAM metallopeptidase domain 9 (meltrin gamma) 129974 27299 hCG15447.3 ADAMDEC1 ADAM-like, -
Conservation and Divergence of ADAM Family Proteins in the Xenopus Genome
Wei et al. BMC Evolutionary Biology 2010, 10:211 http://www.biomedcentral.com/1471-2148/10/211 RESEARCH ARTICLE Open Access ConservationResearch article and divergence of ADAM family proteins in the Xenopus genome Shuo Wei*1, Charles A Whittaker2, Guofeng Xu1, Lance C Bridges1,3, Anoop Shah1, Judith M White1 and Douglas W DeSimone1 Abstract Background: Members of the disintegrin metalloproteinase (ADAM) family play important roles in cellular and developmental processes through their functions as proteases and/or binding partners for other proteins. The amphibian Xenopus has long been used as a model for early vertebrate development, but genome-wide analyses for large gene families were not possible until the recent completion of the X. tropicalis genome sequence and the availability of large scale expression sequence tag (EST) databases. In this study we carried out a systematic analysis of the X. tropicalis genome and uncovered several interesting features of ADAM genes in this species. Results: Based on the X. tropicalis genome sequence and EST databases, we identified Xenopus orthologues of mammalian ADAMs and obtained full-length cDNA clones for these genes. The deduced protein sequences, synteny and exon-intron boundaries are conserved between most human and X. tropicalis orthologues. The alternative splicing patterns of certain Xenopus ADAM genes, such as adams 22 and 28, are similar to those of their mammalian orthologues. However, we were unable to identify an orthologue for ADAM7 or 8. The Xenopus orthologue of ADAM15, an active metalloproteinase in mammals, does not contain the conserved zinc-binding motif and is hence considered proteolytically inactive. We also found evidence for gain of ADAM genes in Xenopus as compared to other species. -
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Identification of Mechanisms and Pathways Involved in MLL2-Mediated Tumorigenesis by Chun-Chi Chang Department of Pathology Duke University Date:_______________________ Approved: ___________________________ Yiping He, Supervisor ___________________________ Salvatore Pizzo ___________________________ Hai Yan Thesis submitted in partial fulfillment of the requirements for the degree of Master of Science in the Department of Pathology in the Graduate School of Duke University 2013 ABSTRACT Identification of Mechanisms and Pathways Involved in MLL2-Mediated Tumorigenesis by Chun-Chi Chang Department of Pathology Duke University Date:_______________________ Approved: ___________________________ Yiping He, Supervisor ___________________________ Salvatore Pizzo ___________________________ Hai Yan An abstract of a thesis submitted in partial fulfillment of the requirements for the degree of Master of Science in the Department of Pathology in the Graduate School of Duke University 2013 Copyright by Chun-Chi Chang 2013 Abstract Myeloid/lymphoid or mixed-lineage leukemia (MLL)-family genes encode histone lysine methyltransferases that play important roles in epigenetic regulation of gene transcription, and these genes are frequently mutated in human cancers. While MLL1 and MLL4 have been the most extensively studied, MLL2 and its homolog MLL3 are not well-understood. Specifically, little is known regarding the extent of global MLL2 involvement in the regulation of gene expression and the mechanism underlying its alterations in mediating tumorigenesis. To study the role of MLL2 in tumorigenesis, we somatically knocked out MLL2 in a colorectal carcinoma cell line, HCT116. We observed that the MLL2 loss of function results in significant reduction of cell growth and multinuclear morphology. We further profiled MLL2 regulated genes and pathways by analyzing gene expression in MLL2 wild-type versus MLL2-null isogenic cell lines. -
ADAM15 Targets MMP9 Activity to Promote Lung Cancer Cell Invasion
ONCOLOGY REPORTS 34: 2451-2460, 2015 ADAM15 targets MMP9 activity to promote lung cancer cell invasion DAN-DAN DONG1, HUI ZHOU2 and GAO LI3 1Department of Pathology, Sichuan Academy of Medical Sciences, Sichuan Provincial People's Hospital, Chengdu, Sichuan 610072; 2Department of Thoracic Medicine, The Affiliated Cancer Hospital of Xiangya School of Medicine, Central South University, Changsha, Hunan 410013; 3Department of Thoracic Surgery, Hainan General Hospital, Haikou, Hainan 570311, P.R. China Received June 17, 2015; Accepted July 20, 2015 DOI: 10.3892/or.2015.4203 Abstract. ADAM15 is a membrane-associated proteinase bound cell surface glycoproteins (1). These zinc-dependent belonging to a disintegrin and metalloproteinase (ADAM) proteases contain an amino terminal metalloproteinase and a family. Recent studies suggested that ADAM15 is overex- disintegrin domain, a cysteine-rich and an EGF-like sequence, pressed in several types of cancer and is involved in metastatic a transmembrane and a cytoplasmic domain (2). It has been tumor progression. However, the function of ADAM15 in proven that 13 members of ADAM family are catalytically non-small cell lung cancer (NSCLC) is currently unknown. In active through their metalloproteinase domain. These catalytic the present study, we found that high expression of ADAM15 members play an important role in mediating extracellular was associated with decreased overall survival (OS) and matrix protein degradation and shedding of growth factors, disease-free survival (DFS) in NSCLC patients. Furthermore, cytokines and adhesion molecules. Besides, the disintegrin shRNA-mediated knockdown of ADAM15 attenuated cell domain of ADAMs is also involved in binding to integrins migration and invasion. Mechanistic study demonstrated that to mediate cell-cell and cell-matrix interactions (3). -
A Disintegrin and Metalloprotease 15 Is Expressed on Rheumatoid Arthritis Synovial Tissue Endothelial Cells and May Mediate Angiogenesis
cells Article A Disintegrin and Metalloprotease 15 is Expressed on Rheumatoid Arthritis Synovial Tissue Endothelial Cells and may Mediate Angiogenesis Shinichiro Nishimi, Takeo Isozaki * , Kuninobu Wakabayashi, Hiroko Takeuchi and Tsuyoshi Kasama Division of Rheumatology, Department of Medicine, Showa University School of Medicine, Tokyo 142-8555, Japan; [email protected] (S.N.); [email protected] (K.W.); [email protected] (H.T.); [email protected] (T.K.) * Correspondence: [email protected]; Tel.: +813(3784)-8942; Fax: +813(3784)-8946 Received: 7 November 2018; Accepted: 5 January 2019; Published: 9 January 2019 Abstract: A disintegrin and metalloprotease 15 (ADAM15) is involved in several malignancies. In this study, we investigated the role of ADAM15 in rheumatoid arthritis (RA) angiogenesis. Soluble ADAM15 (s-ADAM15) in serum from RA and normal (NL) subjects was measured using ELISA. To determine membrane-anchored ADAM15 (ADAM15) expression in RA synovial tissues, immunohistochemistry was performed. To examine the role of ADAM15 in angiogenesis, we performed in vitro Matrigel assays and monocyte adhesion assays using human umbilical vein endothelial cells (HUVECs) transfected with ADAM15 siRNA. Finally, to investigate whether angiogenic mediators were affected by ADAM15, cytokines in ADAM15 siRNA-transfected HUVEC-conditioned medium were measured. ADAM15 was significantly higher in RA serum than in NL serum. ADAM15 was also expressed on RAST endothelial cells. ADAM15 siRNA-treated HUVECs had decreased EC tube formation in response to RA synovial fluids compared with non-treated HUVECs. The adhesion index of ADAM15 siRNA-transfected HUVECs was significantly lower than the adhesion index of control siRNA-transfected HUVECs. -
ADAM15 Supports Prostate Cancer Metastasis by Modulating Tumor Cell–Endothelial Cell Interaction Abdo J
Research Article ADAM15 Supports Prostate Cancer Metastasis by Modulating Tumor Cell–Endothelial Cell Interaction Abdo J. Najy,1,2 Kathleen C. Day,1 and Mark L. Day1,2 1Department of Urology and 2Program in Cellular and Molecular Biology and University of Michigan, Ann Arbor, Michigan Abstract The less studied ADAM (a disintegrin and metalloproteinase) Using human tumor and cDNA microarray technology, we family of membrane metalloproteinases may also support tumor progression by modulating key physiologic cell surface proteins have recently shown that the ADAM15 disintegrin is signifi- such as membrane-anchored growth factors and their comple- cantly overexpressed during the metastatic progression of mentary receptors, cell adhesion molecules, and integrins (4). The human prostate cancer. In the current study, we used ADAM family is composed of 40 members, of which 13 members lentiviral-based short hairpin RNA (shRNA) technology to are catalytically active. These catalytically active members contain down-regulate ADAM15 in the metastatic prostate cancer cell a metalloproteinase domain that is implicated in growth factor line, PC-3. ADAM15 down-regulation dramatically attenuated shedding and extracellular matrix (ECM) degradation. ADAM17 many of the malignant characteristics of PC-3 cells in vitro has been reported to process pro–tumor necrosis factor (TNF)-a, and prevented the s.c. growth of PC-3 cells in severe combined TNF receptors, interleukin-6 receptor, and amphiregulin (5, 6), immunodeficient (SCID) mice. By inhibiting the expression of and ADAM9, ADAM10, ADAM12, and ADAM17 are believed to ADAM15 in PC-3 cells, we showed decreased cell migration cleave the epidermal growth factor receptor (EGFR) ligand, HB- and adhesion to specific extracellular matrix proteins. -
Xenopus ADAM19 Regulates Wnt Signaling and Neural Crest
© 2018. Published by The Company of Biologists Ltd | Development (2018) 145, dev158154. doi:10.1242/dev.158154 RESEARCH ARTICLE Xenopus ADAM19 regulates Wnt signaling and neural crest specification by stabilizing ADAM13 Jiejing Li1,2,*, Mark Perfetto1,3,*, Russell Neuner4, Harinath Bahudhanapati1, Laura Christian1, Ketan Mathavan4, Lance C. Bridges5, Dominique Alfandari4 and Shuo Wei3,‡ ABSTRACT In vertebrate embryos, the NC cells are induced at the neural plate During vertebrate gastrulation, canonical Wnt signaling induces the border (NPB) during gastrulation. NC induction requires formation of neural plate border (NPB). Wnt is also thought to be coordinated actions of multiple signaling pathways, which required for the subsequent specification of neural crest (NC) lineage activate the expression of transcription factors such as Pax3/7, at the NPB, but the direct evidence is lacking. We found previously Zic1 and Msx1 that induce NPB formation (i.e. the NPB specifiers). that the disintegrin metalloproteinase ADAM13 is required for Wnt The NPB specifiers in turn activate the expression of another set of activation and NC induction in Xenopus. Here, we report that transcription factors (i.e. the NC specifiers), such as Snail2, FoxD3 knockdown of ADAM13 or its close paralog ADAM19 severely and Sox9, which specify NC lineage in certain NPB cells. Once downregulates Wnt activity at the NPB, inhibiting NC specification specified, the NC cells undergo proliferation while maintaining without affecting earlier NPB formation. Surprisingly, ADAM19 their multipotency. Around the time of neural tube closure, the NC functions nonproteolytically in NC specification by interacting with cells delaminate and migrate to specific destinations, where they ADAM13 and inhibiting its proteasomal degradation. -
Novel Alternatively Spliced ADAM8 Isoforms Contribute to the Aggressive Bone Metastatic Phenotype of Lung Cancer
Oncogene (2010) 29, 3758–3769 & 2010 Macmillan Publishers Limited All rights reserved 0950-9232/10 www.nature.com/onc ORIGINAL ARTICLE Novel alternatively spliced ADAM8 isoforms contribute to the aggressive bone metastatic phenotype of lung cancer I Herna´ndez1, JL Moreno2, C Zandueta1, L Montuenga3,4 and F Lecanda1 1Adhesion and Metastasis Laboratory, Division of Oncology, University of Navarra, Pamplona, Spain; 2Department of Orthopaedics, University of Maryland School of Medicine, Baltimore, MD, USA; 3Department of Histology and Pathology, School of Medicine, University of Navarra, Pamplona, Spain and 4Biomarkers Laboratory, Center for Applied Biomedical Research (CIMA), University of Navarra, Pamplona, Spain ADAMs (a disintegrin and metalloprotease) are trans- survival rates for lung cancer are o15% in all developed membrane proteins involved in a variety of physiological countries. It is estimated that 30–40% of lung cancer processes and tumorigenesis. Recently, ADAM8 has been patients with advanced NSCLC suffer from bone associated with poor prognosis of lung cancer. However, metastasis (Coleman, 1997). Patients with bone metas- its contribution to tumorigenesis in the context of lung tasis experience pain, metabolic syndromes and spinal cancer metastasis remains unknown. Native ADAM8 cord compression associated with pathological fractures expression levels were lower in lung cancer cell lines. as a consequence of osteolytic lesions. In contrast, we identified and characterized two novel ADAMs (a disintegrin and metalloprotease) form a spliced isoforms encoding truncated proteins, D18a and large family of cell-surface proteins, which are char- D140, which were present in several tumor cell lines and not acterized by disintegrin and metalloproteinase domains, in normal cells. Overexpression of D18a protein resulted in that possess adhesive properties and proteolytic activ- enhanced invasive activity in vitro.ADAM8anditsD140 ities, respectively (Lu et al., 2007). -
Fibroblasts from the Human Skin Dermo-Hypodermal Junction Are
cells Article Fibroblasts from the Human Skin Dermo-Hypodermal Junction are Distinct from Dermal Papillary and Reticular Fibroblasts and from Mesenchymal Stem Cells and Exhibit a Specific Molecular Profile Related to Extracellular Matrix Organization and Modeling Valérie Haydont 1,*, Véronique Neiveyans 1, Philippe Perez 1, Élodie Busson 2, 2 1, 3,4,5,6, , Jean-Jacques Lataillade , Daniel Asselineau y and Nicolas O. Fortunel y * 1 Advanced Research, L’Oréal Research and Innovation, 93600 Aulnay-sous-Bois, France; [email protected] (V.N.); [email protected] (P.P.); [email protected] (D.A.) 2 Department of Medical and Surgical Assistance to the Armed Forces, French Forces Biomedical Research Institute (IRBA), 91223 CEDEX Brétigny sur Orge, France; [email protected] (É.B.); [email protected] (J.-J.L.) 3 Laboratoire de Génomique et Radiobiologie de la Kératinopoïèse, Institut de Biologie François Jacob, CEA/DRF/IRCM, 91000 Evry, France 4 INSERM U967, 92260 Fontenay-aux-Roses, France 5 Université Paris-Diderot, 75013 Paris 7, France 6 Université Paris-Saclay, 78140 Paris 11, France * Correspondence: [email protected] (V.H.); [email protected] (N.O.F.); Tel.: +33-1-48-68-96-00 (V.H.); +33-1-60-87-34-92 or +33-1-60-87-34-98 (N.O.F.) These authors contributed equally to the work. y Received: 15 December 2019; Accepted: 24 January 2020; Published: 5 February 2020 Abstract: Human skin dermis contains fibroblast subpopulations in which characterization is crucial due to their roles in extracellular matrix (ECM) biology. -
ADAM15/PTK6/Cmet Interplay: Promotors of Prostate Cancer
ADAM15/PTK6/cMET interplay: Promotors of prostate cancer progression Melanie Hurtz, MSc. September 2017 School of Medicine Cardiff University Cardiff, CF14 4XN Cardiff, United Kingdom A thesis submitted in partial fulfilment of the requirements of the degree of Doctor of Philosophy (PhD) DECLARATION This Work has not been submitted in substance for any other degree or award at this or any other university or place of learning, nor is being submitted concurrently in candidature for any degree or other aWard. Signed ………………………………… (candidate) Date ………………………… I STATEMENT 1 This thesis is being submitted in partial fulfilment of the requirements for the degree of PhD Signed ………………………………………(candidate) Date ………………………… STATEMENT 2 This thesis is the result of my oWn independent Work/investigation, except Where otherWise stated. Other sources are acknowledged by explicit references. The views expressed are my own. Signed ………………………………………(candidate) Date ………………………… STATEMENT 3 I hereby give consent for my thesis, if accepted, to be available for photocopying and for inter-library loan, and for the title and summary to be made available to outside organisations. Signed ………………………………………(candidate) Date ………………………… STATEMENT 4: PREVIOUSLY APPROVED BAR ON ACCESS I hereby give consent for my thesis, if accepted, to be available for photocopying and for inter-library loans after expiry of a bar on access previously approved by the Academic Standards & Quality Committee. Signed ………………………………………(candidate) Date ……………………… II Σε αυτό που βρήκα εδώ στο καρντιφ, και το μικρό μπόνους Für Joko, und all die guten Tage zum Fliegen Für Mama und Papa III Acknowledgments This thesis Would have been impossible Without the support of my supervisor’s Dr Zara Poghosyan and Dr Vera Knäuper.