bioRxiv preprint doi: https://doi.org/10.1101/2020.01.20.912956; this version posted January 21, 2020. The copyright holder for this preprint (which was not certified by peer review) is the author/funder. All rights reserved. No reuse allowed without permission. Beyond Slam: the DUF560 family outer membrane protein superfamily SPAM has distinct network subclusters that suggest a role in non-lipidated substrate transport and bacterial environmental adaptation Terra J. Mauer1 ¶, Alex S. Grossman2¶, Katrina T. Forest1, and Heidi Goodrich-Blair1,2* 1University of Wisconsin-Madison, Department of Bacteriology, Madison, WI 2University of Tennessee-Knoxville, Department of Microbiology, Knoxville, TN ¶These authors contributed equally to this work. *To whom correspondence should be addressed:
[email protected], https://orcid.org/0000-0003- 1934-2636 Short title: Bacterial Surface/Secreted Protein Associated Outer Membrane Proteins (SPAMs) Abstract In host-associated bacteria, surface and secreted proteins mediate acquisition of nutrients, interactions with host cells, and specificity of host-range and tissue-localization. In Gram- negative bacteria, the mechanism by which many proteins cross, become embedded within, or become tethered to the outer membrane remains unclear. The domain of unknown function (DUF)560 occurs in outer membrane proteins found throughout and beyond the proteobacteria. Functionally characterized DUF560 representatives include NilB, a host-range specificity determinant of the nematode-mutualist Xenorhabdus nematophila and the surface lipoprotein assembly modulators (Slam), Slam1 and Slam2 which facilitate surface exposure of lipoproteins in the human pathogen Neisseria meningitidis. Through network analysis of protein sequence similarity we show that DUF560 subclusters exist and correspond with organism lifestyle rather than with taxonomy, suggesting a role for these proteins in environmental adaptation.