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Checklist of Calicioid Lichens and Fungi for Genera with Members in Temperate Western North America Draft: 2012-03-13
Draft: 2012-03-13 Checklist of Calicioids – E. B. Peterson Checklist of Calicioid Lichens and Fungi For Genera with Members in Temperate Western North America Draft: 2012-03-13 by E. B. Peterson Calicium abietinum, EBP#4640 1 Draft: 2012-03-13 Checklist of Calicioids – E. B. Peterson Genera Acroscyphus Lév. Brucea Rikkinen Calicium Pers. Chaenotheca Th. Fr. Chaenothecopsis Vainio Coniocybe Ach. = Chaenotheca "Cryptocalicium" – potentially undescribed genus; taxonomic placement is not known but there are resemblances both to Mycocaliciales and Onygenales Cybebe Tibell = Chaenotheca Cyphelium Ach. Microcalicium Vainio Mycocalicium Vainio Phaeocalicium A.F.W. Schmidt Sclerophora Chevall. Sphinctrina Fr. Stenocybe (Nyl.) Körber Texosporium Nádv. ex Tibell & Hofsten Thelomma A. Massal. Tholurna Norman Additional genera are primarily tropical, such as Pyrgillus, Tylophoron About the Species lists Names in bold are believed to be currently valid names. Old synonyms are indented and listed with the current name following (additional synonyms can be found in Esslinger (2011). Names in quotes are nicknames for undescribed species. Names given within tildes (~) are published, but may not be validly published. Underlined species are included in the checklist for North America north of Mexico (Esslinger 2011). Names are given with authorities and original citation date where possible, followed by a colon. Additional citations are given after the colon, followed by a series of abbreviations for states and regions where known. States and provinces use the standard two-letter abbreviation. Regions include: NAm = North America; WNA = western North America (west of the continental divide); Klam = Klamath Region (my home territory). For those not known from North America, continental distribution may be given: SAm = South America; EUR = Europe; ASIA = Asia; Afr = Africa; Aus = Australia. -
Antibiotics from Basidiomycetes. Ix"
1112 THE JOURNAL OF ANTIBIOTICS NOV. 1979 ANTIBIOTICS FROM BASIDIOMYCETES. IX" OUDEMANSIN, AN ANTIFUNGAL ANTIBIOTIC FROM OUDEMANSIELLA MUCIDA (SCHRADER ex FR.) HOEHNEL (AGARICALES) TIMM ANKE, HANS JURGEN HECHT*, GEORG SCHRAMM** and WOLFGANG STEGLICH** Institut fur Biologic I der Universitat, Auf der Morgenstelle 1, D-74 Tubingen, FRG *Forschergruppe Rontgenstrukturanalyse Biologischer Makromolekiile , Universitat Wiirzburg, Am Hubland, D-87 Wurzburg, FRG **Institut fur Organische Chemie and Biochemie der Universitat , Gerhard-Domagk-Str. 1, D-53 Bonn, FRG (Received for publication July 2, 1979) From mycelial cultures of Oudemansiella mucida a crystalline optically active antibiotic, oudemansin (2), has been isolated; its structure is closely related to strobilurin A (1). The relative configuration of oudemansin have been determined by X-ray analysis. The antibiotic exhibits strong antifungal properties and inhibits respiration in fungi, cells of the ascitic form of EHRLICHcarcinoma, and rat liver mitochondria. Recently we elucidated the structures of two antifungal antibiotics from cultures of Strobi/urus tenace1/us2'31. Strobilurin A (1) has the same molecular formula Cs,;H,903 as mucidin, an antifungal compound isolated from Oudemansie/la mucida by VONDRACEK et a/.4'51 However, in contrast to oily, achiral 1, mucidin is crystalline (m.p. 51-53°C) and optically active ([x]546 +33')". In this publication we describe the isolation and structural elucidation of oudemansin (2), a new antibiotic from Oudemansiella mucida showing similar biological activity to 1. Results and Discussion 1. Fermentation, Isolation, and Physico-Chemical Properties Mycelial cultures of Oudemansie/la mucida obtained from spore prints were grown on yeast extract- malt extract-glucose (YMG) medium as described in the experimental section. -
LUNDY FUNGI: FURTHER SURVEYS 2004-2008 by JOHN N
Journal of the Lundy Field Society, 2, 2010 LUNDY FUNGI: FURTHER SURVEYS 2004-2008 by JOHN N. HEDGER1, J. DAVID GEORGE2, GARETH W. GRIFFITH3, DILUKA PEIRIS1 1School of Life Sciences, University of Westminster, 115 New Cavendish Street, London, W1M 8JS 2Natural History Museum, Cromwell Road, London, SW7 5BD 3Institute of Biological Environmental and Rural Sciences, University of Aberystwyth, SY23 3DD Corresponding author, e-mail: [email protected] ABSTRACT The results of four five-day field surveys of fungi carried out yearly on Lundy from 2004-08 are reported and the results compared with the previous survey by ourselves in 2003 and to records made prior to 2003 by members of the LFS. 240 taxa were identified of which 159 appear to be new records for the island. Seasonal distribution, habitat and resource preferences are discussed. Keywords: Fungi, ecology, biodiversity, conservation, grassland INTRODUCTION Hedger & George (2004) published a list of 108 taxa of fungi found on Lundy during a five-day survey carried out in October 2003. They also included in this paper the records of 95 species of fungi made from 1970 onwards, mostly abstracted from the Annual Reports of the Lundy Field Society, and found that their own survey had added 70 additional records, giving a total of 156 taxa. They concluded that further surveys would undoubtedly add to the database, especially since the autumn of 2003 had been exceptionally dry, and as a consequence the fruiting of the larger fleshy fungi on Lundy, especially the grassland species, had been very poor, resulting in under-recording. Further five-day surveys were therefore carried out each year from 2004-08, three in the autumn, 8-12 November 2004, 4-9 November 2007, 3-11 November 2008, one in winter, 23-27 January 2006 and one in spring, 9-16 April 2005. -
Nature Research Centre
N a t u r e Research Centre VILNIUS 2015 UDK 502:001.891(474.5) Na251 Akademijos Str. 2, LT-08412 Vilnius Telephone: +370 5 272 92 57 Fax: +370 5 272 93 52 e-maill: [email protected] http://www.gamtostyrimai.lt/en ISBN 978-9986-443-84-1 © Gamtos tyrimų centras, 2015 The State Scientific Research Institute Nature Research Centre WELCOME, The State Scientific Research Institute Nature Research Centre (NRC) was es- and biomedicine sci- tablished on 31 December 2009 under the Resolution of the Government of the ences and cooperation- Republic of Lithuania (Official Gazette, No. 158-7186, 2009) by merging the In- based solutions to stitute of Botany, the Institute of Ecology of Vilnius University and the Institute scientific tasks are the of Geology and Geography. The research potential and the experimental basis fundamental principles of the three institutes were integrated to create an up-to-date scientific research underlying the activities infrastructure for investigations into present-day and past ecosystems, as well of the NRC. In twenty as studies and development of environmental protection technologies. Uphold- five laboratories of the ing 70-year-old traditions and experience, the newly established NRC not only NRC, scientists carry pursues and co-ordinates long-term scientific research in various fields of biotic out investigations into and abiotic nature and ensures the competence of Lithuania on the interna- environmental state tional stage, but also takes an active role in the development and implementa- quality, natural ecosys- tion of a conceptual framework for the protection of the living environment tems, habitats, species, structure of communi- and its sustainable development, as well as disseminating scientific knowledge ties and populations, regularities and mechanisms of functioning, sensitiv- of biotic and abiotic environment, thus contributing to the development of the ity, vulnerability, genetic diversity, adaptations, microevolution under con- knowledge economy and education of society. -
The Genus Coprinus and Allies
BRITISH MYCOLOGICAL SOCIETY FUNGAL EDUCATION & OUTREACH— [email protected] The genus Coprinus and allies Most of the species previously in the genus Coprinus and commonly known as Inkcaps were transferred into three new genera in 2001 on the basis of their DNA: Coprinopsis, Coprinellus and Parasola, leaving just three British species in Coprinus in the strict sense. The name Inkcap comes from the characteristic habit of most of these species of dissolving into a puddle of black liquid when mature - or ‘deliquescing’. In the past this liquid was indeed used for ink. Many Coprinus comatus species are very short-lived – some fruit bodies survive less than a day – Photo credit: Nick White and they occur in moist conditions throughout the year in a range of different habitats according to species including soil, wood, vegetation, roots and dung. Caps are thin-fleshed, usually white when young and often appear coated in fine white powder or fibrils called ‘veil’; they range in size from minute (less than 0.5cm) to more than 5cm across. Gills start out pale but soon turn black with the deliquescing spores. Stems are white and in some species very tall in relation to cap size. One species, Coprinopsis atramentaria, has a seriously unpleasant effect if eaten a few hours either side of consuming alcohol, acting like the drug ‘Antabuse’ used to treat alcoholics. Coprinopsis lagopus Photo credit: Penny Cullington Unless otherwise stated, text kindly provided by Penny Cullington and members of the BMS Fungus recording groups BRITISH MYCOLOGICAL SOCIETY FUNGAL EDUCATION & OUTREACH— [email protected] The genus Agaricus This genus contains not only our commercially grown shop mushroom (Agaricus bisporus) but also about 40 other species in the UK including the very tasty Agaricus campestris (Field Mushroom) and several others renowned for their excellent flavour. -
The Fungi of Slapton Ley National Nature Reserve and Environs
THE FUNGI OF SLAPTON LEY NATIONAL NATURE RESERVE AND ENVIRONS APRIL 2019 Image © Visit South Devon ASCOMYCOTA Order Family Name Abrothallales Abrothallaceae Abrothallus microspermus CY (IMI 164972 p.p., 296950), DM (IMI 279667, 279668, 362458), N4 (IMI 251260), Wood (IMI 400386), on thalli of Parmelia caperata and P. perlata. Mainly as the anamorph <it Abrothallus parmeliarum C, CY (IMI 164972), DM (IMI 159809, 159865), F1 (IMI 159892), 2, G2, H, I1 (IMI 188770), J2, N4 (IMI 166730), SV, on thalli of Parmelia carporrhizans, P Abrothallus parmotrematis DM, on Parmelia perlata, 1990, D.L. Hawksworth (IMI 400397, as Vouauxiomyces sp.) Abrothallus suecicus DM (IMI 194098); on apothecia of Ramalina fustigiata with st. conid. Phoma ranalinae Nordin; rare. (L2) Abrothallus usneae (as A. parmeliarum p.p.; L2) Acarosporales Acarosporaceae Acarospora fuscata H, on siliceous slabs (L1); CH, 1996, T. Chester. Polysporina simplex CH, 1996, T. Chester. Sarcogyne regularis CH, 1996, T. Chester; N4, on concrete posts; very rare (L1). Trimmatothelopsis B (IMI 152818), on granite memorial (L1) [EXTINCT] smaragdula Acrospermales Acrospermaceae Acrospermum compressum DM (IMI 194111), I1, S (IMI 18286a), on dead Urtica stems (L2); CY, on Urtica dioica stem, 1995, JLT. Acrospermum graminum I1, on Phragmites debris, 1990, M. Marsden (K). Amphisphaeriales Amphisphaeriaceae Beltraniella pirozynskii D1 (IMI 362071a), on Quercus ilex. Ceratosporium fuscescens I1 (IMI 188771c); J1 (IMI 362085), on dead Ulex stems. (L2) Ceriophora palustris F2 (IMI 186857); on dead Carex puniculata leaves. (L2) Lepteutypa cupressi SV (IMI 184280); on dying Thuja leaves. (L2) Monographella cucumerina (IMI 362759), on Myriophyllum spicatum; DM (IMI 192452); isol. ex vole dung. (L2); (IMI 360147, 360148, 361543, 361544, 361546). -
Preliminary Classification of Leotiomycetes
Mycosphere 10(1): 310–489 (2019) www.mycosphere.org ISSN 2077 7019 Article Doi 10.5943/mycosphere/10/1/7 Preliminary classification of Leotiomycetes Ekanayaka AH1,2, Hyde KD1,2, Gentekaki E2,3, McKenzie EHC4, Zhao Q1,*, Bulgakov TS5, Camporesi E6,7 1Key Laboratory for Plant Diversity and Biogeography of East Asia, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming 650201, Yunnan, China 2Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai, 57100, Thailand 3School of Science, Mae Fah Luang University, Chiang Rai, 57100, Thailand 4Landcare Research Manaaki Whenua, Private Bag 92170, Auckland, New Zealand 5Russian Research Institute of Floriculture and Subtropical Crops, 2/28 Yana Fabritsiusa Street, Sochi 354002, Krasnodar region, Russia 6A.M.B. Gruppo Micologico Forlivese “Antonio Cicognani”, Via Roma 18, Forlì, Italy. 7A.M.B. Circolo Micologico “Giovanni Carini”, C.P. 314 Brescia, Italy. Ekanayaka AH, Hyde KD, Gentekaki E, McKenzie EHC, Zhao Q, Bulgakov TS, Camporesi E 2019 – Preliminary classification of Leotiomycetes. Mycosphere 10(1), 310–489, Doi 10.5943/mycosphere/10/1/7 Abstract Leotiomycetes is regarded as the inoperculate class of discomycetes within the phylum Ascomycota. Taxa are mainly characterized by asci with a simple pore blueing in Melzer’s reagent, although some taxa have lost this character. The monophyly of this class has been verified in several recent molecular studies. However, circumscription of the orders, families and generic level delimitation are still unsettled. This paper provides a modified backbone tree for the class Leotiomycetes based on phylogenetic analysis of combined ITS, LSU, SSU, TEF, and RPB2 loci. In the phylogenetic analysis, Leotiomycetes separates into 19 clades, which can be recognized as orders and order-level clades. -
A Reference Genome of the European Beech (Fagus Sylvatica L.)
A reference genome of the European Beech (Fagus sylvatica L.) Bagdevi Mishra1,2, Deepak K. Gupta1,2, Markus Pfenninger1,3, Thomas Hickler1,4, Ewald Langer4, Bora Nam1,2, Juraj Paule6, Rahul Sharma1, Bartosz Ulaszewski7, Joanna Warmbier7, Jaroslaw Burczyk7, Marco Thines1,2 1 Senckenberg Biodiversity and Climate Research Centre (BiK-F), Senckenberg Gesellschaft für Naturforschung, Senckenberganlage 25, D-60325 Frankfurt am Main, Germany 2 Goethe University, Department for Biological Sciences, Institute of Ecology, Evolution and Diversity, Max-von-Laue-Str. 9, D-60438 Frankfurt am Main, Germany 3 Johannes Gutenberg Universität, Fachbereich Biologie, Institut für Organismische und Molekulare Evolutionsbiologie (iOME), , Gresemundweg 2, 55128 Mainz 4 Goethe University, Department for Geology, Institute of Geography, Max-von-Laue-Str. 23, D-60438 Frankfurt am Main, Germany 5 University of Kassel, FB 10, Department of Ecology, Heinrich-Plett-Str. 40, D-34132 Kassel, Germany 6 Senckenberg Research Institute and Natural History Museum Frankfurt, Department of Botany and Molecular Evolution, Senckenberg Gesellschaft für Naturforschung, Senckenberganlage 25, D-60325 Frankfurt am Main, Germany 7 Kazimierz Wielki University, Department of Genetics, ul. Chodkiewicza 30, 85-064 Bydgoszcz, Poland Author for correspondence – Marco Thines ([email protected]). ORCID: 0000-0001-7740-6875 Downloaded from https://academic.oup.com/gigascience/advance-article-abstract/doi/10.1093/gigascience/giy063/5017772 by guest on 11 June 2018 Abstract Background: The European Beech is arguably the most important climax broad-leaved tree species in Central Europe, widely planted for its valuable wood. Here we report the 542 Mb draft genome sequence of an up to 300-year-old individual (Bhaga) from an undisturbed stand in the Kellerwald- Edersee National Park in central Germany. -
Liste Rouge Des Espèces Menacées En Suisse: Champignons Supérieurs
> L’environnement pratique > Listes rouges / Gestion des espèces 18 > Liste rouge 07 Champignons supérieurs Liste rouge des espèces menacées en Suisse Édition 2007 > L’environnement pratique > Listes rouges / Gestion des espèces > Liste rouge Champignons supérieurs Liste rouge des espèces menacées en Suisse Édition 2007 Auteurs: Beatrice Senn-Irlet, Guido Bieri, Simon Egli Publié par l’Office fédéral de l’environnement OFEV et par l’Institut fédéral de recherches sur la forêt, la neige et le paysage WSL Berne, 2007 Valeur juridique de cette publication Impressum Liste rouge de l’OFEV au sens de l’article 14, 3e alinéa de Éditeur l’ordonnance du 16 janvier 1991 sur la protection de la nature et du Office fédéral de l’environnement (OFEV), Berne paysage (RS 451.1) www.admin.ch/ch/f/sr/45.html Institut fédéral de recherches sur la forêt, la neige et le paysage (WSL), Birmensdorf ZH La présente publication est une aide à l’exécution élaborée par l’OFEV en tant qu’autorité de surveillance. Destinée en premier lieu Auteurs aux autorités d’exécution, elle concrétise des notions juridiques Beatrice Senn-Irlet, biodiversité et conservation biologique, WSL indéterminées provenant de lois et d’ordonnances et favorise ainsi Guido Bieri, wildbild une application uniforme de la législation. Si les autorités d’exécution Simon Egli, dynamique forestière, WSL en tiennent compte, elles peuvent partir du principe que leurs décisions seront conformes au droit fédéral. D’autres solutions sont Responsables aussi licites dans la mesure où elles sont conformes au droit en Francis Cordillot et Stephan Lussi, Division Gestion des espèces OFEV vigueur. -
La Flore Fongique Du Bois De Chênes Et Quelques Remarques Sur Les Modifications Au Cours Des Dernières Décennies
La flore fongique du Bois de Chênes et quelques remarques sur les modifications au cours des dernières décennies Autor(en): Senn-Irlet, Béatrice / Desponds, Bernard / Favre, Isabelle Objekttyp: Article Zeitschrift: Mémoires de la Société Vaudoise des Sciences Naturelles Band (Jahr): 28 (2019) PDF erstellt am: 28.09.2021 Persistenter Link: http://doi.org/10.5169/seals-823121 Nutzungsbedingungen Die ETH-Bibliothek ist Anbieterin der digitalisierten Zeitschriften. Sie besitzt keine Urheberrechte an den Inhalten der Zeitschriften. Die Rechte liegen in der Regel bei den Herausgebern. Die auf der Plattform e-periodica veröffentlichten Dokumente stehen für nicht-kommerzielle Zwecke in Lehre und Forschung sowie für die private Nutzung frei zur Verfügung. Einzelne Dateien oder Ausdrucke aus diesem Angebot können zusammen mit diesen Nutzungsbedingungen und den korrekten Herkunftsbezeichnungen weitergegeben werden. Das Veröffentlichen von Bildern in Print- und Online-Publikationen ist nur mit vorheriger Genehmigung der Rechteinhaber erlaubt. Die systematische Speicherung von Teilen des elektronischen Angebots auf anderen Servern bedarf ebenfalls des schriftlichen Einverständnisses der Rechteinhaber. Haftungsausschluss Alle Angaben erfolgen ohne Gewähr für Vollständigkeit oder Richtigkeit. Es wird keine Haftung übernommen für Schäden durch die Verwendung von Informationen aus diesem Online-Angebot oder durch das Fehlen von Informationen. Dies gilt auch für Inhalte Dritter, die über dieses Angebot zugänglich sind. Ein Dienst der ETH-Bibliothek ETH Zürich, Rämistrasse 101, 8092 Zürich, Schweiz, www.library.ethz.ch http://www.e-periodica.ch La flore fongique du Bois de Chênes et quelques remarques sur les modifications au cours des dernières décennies Béatrice SENN-IRLET1, Bernard DESPONDS2, Isabelle FAVRE3 & Gilbert BOVAY4 Senn-Irlet B., Desponds B., Favre I. -
Chaenotheca Chrysocephala Species Fact Sheet
SPECIES FACT SHEET Common Name: yellow-headed pin lichen Scientific Name: Chaenotheca chrysocephala (Turner ex Ach.) Th. Fr. Division: Ascomycota Class: Sordariomycetes Order: Trichosphaeriales Family: Coniocybaceae Technical Description: Crustose lichen. Photosynthetic partner Trebouxia. Thallus visible on substrate, made of fine grains or small lumps or continuous, greenish yellow. Sometimes thallus completely immersed and not visible on substrate. Spore-producing structure (apothecium) pin- like, comprised of a obovoid to broadly obconical head (capitulum) 0.2-0.3 mm diameter on a slender stalk, the stalk 0.6-1.3 mm tall and 0.04 -0.8 mm diameter; black or brownish black or brown with dense yellow colored powder on the upper part. Capitulum with fine chartreuse- yellow colored powder (pruina) on the under side. Upper side with a mass of powdery brown spores (mazaedium). Spore sacs (asci) cylindrical, 14-19 x 2.0-3.5 µm and disintegrating; spores arranged in one line in the asci (uniseriate), 1-celled, 6-9 x 4-5 µm, short ellipsoidal to globose with rough ornamentation of irregular cracks. Chemistry: all spot tests negative. Thallus and powder on stalk (pruina) contain vulpinic acid, which gives them the chartreuse-yellow color. This acid also colors Letharia spp., the wolf lichens. Other descriptions and illustrations: Nordic Lichen Flora 1999, Peterson (no date), Sharnoff (no date), Stridvall (no date), Tibell 1975. Distinctive Characters: (1) bright chartreuse-yellow thallus with yellow pruina under capitulum and on the upper part of the stalk, (2) spore mass brown, (3) spores unicellular (4) thallus of small yellow lumps. Similar species: Many other pin lichens look similar to Chaenotheca chrysocephala. -
989946 1302 1170751 1057 After
ITS1 ITS2 Seqs OTUs Seqs OTUs Fungi (0.95) 992852 1911 1173834 1691 Raw in OTU 989946 1302 1170751 1057 table (n≥10) After decontam 915747 1206 1016235 1044 Final(97% 889290 1193 992890 1032 coverage) Table S1. Total sequence count + OTUs for ITS1 + ITS2 datasets at each OTU table trimming step.1Non-target samples discarded. ITS1 ITS2 Seqs zOTUs Seqs zOTUs All zotus1 1061048 3135 2689730 1880 Fungi 1024007 3094 1210397 1705 (0.95) After 997077 3012 1107636 1685 decontam Final(97% 967316 2772 1083789 1559 coverage) Table S2. Total sequence count + zotus (n=8) for ITS1 + ITS2 datasets at each zotu table trimming step. 1Non-target samples and "zotus"/ASVs with <8 copies discarded. Bistorta vivipara Dryas octopetala Salix polaris (n=519)1 (n=22) (n=20)2 Fungi (0.95) 917667 41314 33871 Raw in OTU 914888 41272 33786 table (n≥10) After 843137 39880 32730 decontam Final (97% 803649 39880 30069 coverage) Sequences min=251, min=382, min=449, per avg=1523.6, avg=1812.7, avg=1551.2, sample max=7680 max=3735 max=3516 Table S3. ITS1 data quality filtering steps (OTUs). For Bistorta vivipara, 80 samples of the original 599 that had too few sequences to meet the coverage threshold of 97% in both the OTU and zotu datasets were discarded. 21 Salix polaris sample was discarded for the same reason. Bistorta vivipara Dryas octopetala Salix polaris (n=519)1 (n=22) (n=20) 2 Fungi (0.95) 984812 44702 36145 After 919672 43286 34119 decontam Final (97% 908621 43286 33141 coverage) Sequences min=251, min=382, min=449, per avg=1519.4, avg=1812.7, avg=1546.7, sample max=7680 max=3730 max=3516 Table S4.