Biol B242 - Coevolution
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A Memetic Framework for Cooperative Coevolution of Recurrent Neural Networks
Proceedings of International Joint Conference on Neural Networks, San Jose, California, USA, July 31 – August 5, 2011 A Memetic Framework for Cooperative Coevolution of Recurrent Neural Networks Rohitash Chandra, Marcus Frean and Mengjie Zhang Abstract— Memetic algorithms and cooperative coevolution refinement techniques has been a major focus of study in are emerging fields in evolutionary computation which have memetic computation. There is a need to use non-gradient shown to be powerful tools for real-world application problems based local search, especially in problems where gradient- and for training neural networks. Cooperative coevolution decomposes a problem into subcomponents that evolve inde- based approaches fail, as in the case of training recurrent net- pendently. Memetic algorithms provides further enhancement works in problems with long-term dependencies. Crossover- to evolutionary algorithms with local refinement. The use based local search methods are non-gradient based and have of crossover-based local refinement has gained attention in recently gained attention [8], [9]. In crossover based local memetic computing. This paper employs a cooperative coevo- search, efficient crossover operators which have local search lutionary framework that utilises the strength of local refine- ment via crossover. The framework is evaluated by training properties are used for local refinement with a population recurrent neural networks on grammatical inference problems. of a few individuals. They have shown promising results in The results show that the proposed approach can achieve comparison to other evolutionary approaches for problems better performance than the standard cooperative coevolution with high dimensions [9]. framework. Cooperative coevolution (CC) divides a large problem into smaller subcomponents and solves them independently I. -
Evolutionary Cognitive Neuroscience Cognitive Neuroscience Michael S
MD DALIM #870693 9/24/06 GREEN PURPLE Evolutionary Cognitive Neuroscience Cognitive Neuroscience Michael S. Gazzaniga, editor Gary Lynch, Synapses, Circuits, and the Beginning of Memory Barry E. Stein and M. Alex Meredith, The Merging of the Senses Richard B. Ivry and Lynn C. Robertson, The Two Sides of Perception Steven J. Luck, An Introduction to the Event-Related Potential Technique Roberto Cabeza and Alan Kingstone, eds., Handbook of Functional Neuroimaging of Cognition Carl Senior, Tamara Russell, and Michael S. Gazzaniga, eds., Methods in Mind Steven M. Platek, Julian Paul Keenan, and Todd K. Shackelford, eds., Evolutionary Cognitive Neuroscience Evolutionary Cognitive Neuroscience Edited by Steven M. Platek, Julian Paul Keenan, and Todd K. Shackelford The MIT Press Cambridge, Massachusetts London, England © 2007 Massachusetts Institute of Technology All rights reserved. No part of this book may be reproduced in any form by any electronic or mechanical means (including photocopying, recording, or informa- tion storage and retrieval) without permission in writing from the publisher. MIT Press books may be purchased at special quantity discounts for business or sales promotional use. For information, please email special_sales@mitpress. mit.edu or write to Special Sales Department, The MIT Press, 55 Hayward Street, Cambridge, MA 02142. This book printed and bound in the United States of America. Library of Congress Cataloging-in-Publication Data Evolutionary cognitive neuroscience / edited by Steven M. Platek, Julian Paul Keenan, and Todd K. Shackelford. p. cm.—(Cognitive neuroscience) Includes bibliographical references and index. ISBN 13: 978-0-262-16241-8 ISBN 10: 0-262-16241-5 1. Cognitive neuroscience. 2. -
The Coevolution Theory of Autumn Colours Marco Archetti1* and Sam P
Received 3 December 2003 FirstCite Accepted 25 February 2004 e-publishing Published online The coevolution theory of autumn colours Marco Archetti1* and Sam P. Brown2 1De´partement de Biologie, Section E´ cologie et E´ volution, Universite´ de Fribourg, Chemin du Muse´e 10, 1700 Fribourg, Switzerland 2Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK According to the coevolution theory of autumn colours, the bright colours of leaves in autumn are a warning signal to insects that lay their eggs on the trees in that season. If the colour is linked to the level of defensive commitment of the tree and the insects learn to avoid bright colours, this may lead to a coevolutionary process in which bright trees reduce their parasite load and choosy insects locate the most profitable hosts for the winter. We try to clarify what the theory actually says and to correct some misun- derstandings that have been put forward. We also review current research on autumn colours and discuss what needs to be done to test the theory. Keywords: autumn colours; coevolution; biological signalling; trees; evolution 1. INTRODUCTION that is also variable. Leaf abscission and senescence may be preadaptations to the phenomenon of autumn colours, Why do leaves change their colour in autumn? Bright aut- but they are by no means the same thing. umn colours occur in many deciduous tree species and The second is that bright colours are not just the effect are well known to everybody. However, an evolutionary of the degradation of chlorophyll, but new pigments are explanation to this question has only recently been put actively produced in autumn (Duggelin et al. -
Mating Preferences Might Evolve by Natural Selection. If Mating Mate
A GENERAL MODEL OF SEXUAL AND NATURAL SELECTION P. O'DONALD Department of Zoology, University College of North Wales, bangor Received28.xii.66 1.INTRODUCTION FISHERin The Genetical Theory of JVatural Selection (1930) described how mating preferences might evolve by natural selection. If mating behaviour varies among different genotypes, some individuals may have an hereditary disposition to mate with others having particular characteristics. Usually of course it is the females who choose the males and their choice is determined by the likelihood that the males' display will release their mating responses. If some females prefer to mate with those males that have characteristics advantageous in natural selection, then the genotypes that determine such matings will also be selected: the offspring will carry both the advantageous geno- types and the genotypes of the mating preference. Once the mating preference is established, it will itself add to the selective advantage of the preferred genotypes: a "runaway process" as Fisher called it develops. In a paper in Heredity (1963) I described a mathematical model of this type of selection. In the simplest case two loci must be involved: one locus determines the preferred character and the other the mating preference. If there are only two alleles segregating at each locus, ten different genotypes can occur if the loci are linked and nine if they are not. If they are sex-linked, there are i possible genotypes. I derived finite difference equations giving the frequencies of the genotypes in terms of parameters describing the degree of dominance of the preferred genotypes and the recombination fractions of the loci. -
Information Systems Theorizing Based on Evolutionary Psychology: an Interdisciplinary Review and Theory Integration Framework1
Kock/IS Theorizing Based on Evolutionary Psychology THEORY AND REVIEW INFORMATION SYSTEMS THEORIZING BASED ON EVOLUTIONARY PSYCHOLOGY: AN INTERDISCIPLINARY REVIEW AND THEORY INTEGRATION FRAMEWORK1 By: Ned Kock on one evolutionary information systems theory—media Division of International Business and Technology naturalness theory—previously developed as an alternative to Studies media richness theory, and one non-evolutionary information Texas A&M International University systems theory, channel expansion theory. 5201 University Boulevard Laredo, TX 78041 Keywords: Information systems, evolutionary psychology, U.S.A. theory development, media richness theory, media naturalness [email protected] theory, channel expansion theory Abstract Introduction Evolutionary psychology holds great promise as one of the possible pillars on which information systems theorizing can While information systems as a distinct area of research has take place. Arguably, evolutionary psychology can provide the potential to be a reference for other disciplines, it is the key to many counterintuitive predictions of behavior reasonable to argue that information systems theorizing can toward technology, because many of the evolved instincts that benefit from fresh new insights from other fields of inquiry, influence our behavior are below our level of conscious which may in turn enhance even more the reference potential awareness; often those instincts lead to behavioral responses of information systems (Baskerville and Myers 2002). After that are not self-evident. This paper provides a discussion of all, to be influential in other disciplines, information systems information systems theorizing based on evolutionary psych- research should address problems that are perceived as rele- ology, centered on key human evolution and evolutionary vant by scholars in those disciplines and in ways that are genetics concepts and notions. -
Insufficient Emotion: Soul-Searching by a Former Indicter of Strong
Emotion Review Vol. 2, No. 3 (July 2010) 234–239 © 2010 SAGE Publications and The International Society for Research on Emotion Insufficient Emotion: Soul-searching by a Former ISSN 1754-0739 DOI: 10.1177/1754073910362598 Indicter of Strong Emotions er.sagepub.com George Loewenstein Department of Social & Decision Sciences, Carnegie Mellon University, USA Abstract Contrary to the many accounts of the destructive effects of strong emotions, this article argues that the most serious problems facing the world are caused by a deficiency rather than an excess of emotions. It then shows how an evolutionary account of emotion can explain when and why such deficiencies occur. Keywords decision making, emotion At that moment I was fully aware for the first time how far advanced the researchers have argued that these types of emotions are benefi- process of paralysis already was in me – it was if I were moving through cial, based on the finding that their absence, whether due to brain flowing, bright water without being halted or taking root anywhere, and I damage (Damasio, 1994) or experimental intervention (e.g., knew very well that this chill was something dead and corpse-like, not yet Wilson & Schooler, 1991) tends to degrade the quality of decision surrounded by the foul breath of decomposition but already numbed beyond recover, a grimly cold lack of emotions. making. Representing a similar perspective, there are myriad (Stefan Zweig, 1922 / 2004, p. 19) stories, presented in books such as The Gift of Fear: Survival Signals That Protect Us From Violence (De Becker, 1997), of Do emotions help or hurt decision making? This question has people who report having survived against the odds as a result of been the focus of much implicit and explicit debate. -
Molecular Ecology of Petrels
M o le c u la r e c o lo g y o f p e tr e ls (P te r o d r o m a sp p .) fr o m th e In d ia n O c e a n a n d N E A tla n tic , a n d im p lic a tio n s fo r th e ir c o n se r v a tio n m a n a g e m e n t. R u th M a rg a re t B ro w n A th e sis p re se n te d fo r th e d e g re e o f D o c to r o f P h ilo so p h y . S c h o o l o f B io lo g ic a l a n d C h e m ic a l S c ie n c e s, Q u e e n M a ry , U n iv e rsity o f L o n d o n . a n d In stitu te o f Z o o lo g y , Z o o lo g ic a l S o c ie ty o f L o n d o n . A u g u st 2 0 0 8 Statement of Originality I certify that this thesis, and the research to which it refers, are the product of my own work, and that any ideas or quotations from the work of other people, published or otherwise, are fully acknowledged in accordance with the standard referencing practices of the discipline. -
Oxytocin Is a Nonapeptide Involved in a Wide Range of Physiologic OXT Activity Depends on Adequate Interaction with Its Unique and Behavioral Functions
Evolutionary pattern in the OXT-OXTR system in primates: Coevolution and positive selection footprints Pedro Vargas-Pinillaa,1, Vanessa Rodrigues Paixão-Côrtesa,1, Pamela Paréa, Luciana Tovo-Rodriguesa, Carlos Meton de Alencar Gadelha Vieiraa, Agatha Xaviera, David Comasb, Alcides Pissinattic, Marialva Sinigagliaa, Maurício Menegatti Rigoa, Gustavo Fioravanti Vieiraa, Aldo B. Luciond, Francisco Mauro Salzanoa,2, and Maria Cátira Bortolinia,2 aDepartamento de Genética, Instituto de Biociências, Universidade Federal do Rio Grande do Sul, 91501-970 Porto Alegre, RS, Brazil; bInstitut de Biologia Evolutiva, Departament de Ciències Experimentals i de la Salut, Universitat Pompeu Fabra, 08003 Barcelona, Spain; cCentro de Primatologia do Rio de Janeiro, 20940-200 Rio de Janeiro, RJ, Brazil; and dDepartamento de Fisiologia, Instituto de Ciências Básicas da Saúde, Universidade Federal do Rio Grande do Sul, 90050-170 Porto Alegre, RS, Brazil Contributed by Francisco Mauro Salzano, November 26, 2014 (sent for review July 11, 2014; reviewed by Guido Barbujani and Rafal Slusarz) Oxytocin is a nonapeptide involved in a wide range of physiologic OXT activity depends on adequate interaction with its unique and behavioral functions. Until recently, it was believed that an receptor, OXTR, although it can also bind to the vasopressin unmodified oxytocin sequence was present in all placental mam- receptors (AVPR1a, AVPR1b, and AVPR2) with lower affinity mals. This study analyzed oxytocin (OXT) in 29 primate species and (11–13). Similar to other receptors that use G proteins as OXTR the oxytocin receptor ( ) in 21 of these species. We report transducer signals across the cell membranes, OXTR is com- here three novel OXT forms in the New World monkeys, as well posed of seven transmembrane (TM1–TM7), four extracellular as a more extensive distribution of a previously described variant (N-terminal tail-ECL3), and four intracellular (ICL1-C-terminal (Leu8Pro). -
Mate Choice | Principles of Biology from Nature Education
contents Principles of Biology 171 Mate Choice Reproduction underlies many animal behaviors. The greater sage grouse (Centrocercus urophasianus). Female sage grouse evaluate males as sexual partners on the basis of the feather ornaments and the males' elaborate displays. Stephen J. Krasemann/Science Source. Topics Covered in this Module Mating as a Risky Behavior Major Objectives of this Module Describe factors associated with specific patterns of mating and life history strategies of specific mating patterns. Describe how genetics contributes to behavioral phenotypes such as mating. Describe the selection factors influencing behaviors like mate choice. page 882 of 989 3 pages left in this module contents Principles of Biology 171 Mate Choice Mating as a Risky Behavior Different species have different mating patterns. Different species have evolved a range of mating behaviors that vary in the number of individuals involved and the length of time over which their relationships last. The most open type of relationship is promiscuity, in which all members of a community can mate with each other. Within a promiscuous species, an animal of either gender may mate with any other male or female. No permanent relationships develop between mates, and offspring cannot be certain of the identity of their fathers. Promiscuous behavior is common in bonobos (Pan paniscus), as well as their close relatives, the chimpanzee (P. troglodytes). Bonobos also engage in sexual activity for activities other than reproduction: to greet other members of the community, to release social tensions, and to resolve conflicts. Test Yourself How might promiscuous behavior provide an evolutionary advantage for males? Submit Some animals demonstrate polygamous relationships, in which a single individual of one gender mates with multiple individuals of the opposite gender. -
8. Primate Evolution
8. Primate Evolution Jonathan M. G. Perry, Ph.D., The Johns Hopkins University School of Medicine Stephanie L. Canington, B.A., The Johns Hopkins University School of Medicine Learning Objectives • Understand the major trends in primate evolution from the origin of primates to the origin of our own species • Learn about primate adaptations and how they characterize major primate groups • Discuss the kinds of evidence that anthropologists use to find out how extinct primates are related to each other and to living primates • Recognize how the changing geography and climate of Earth have influenced where and when primates have thrived or gone extinct The first fifty million years of primate evolution was a series of adaptive radiations leading to the diversification of the earliest lemurs, monkeys, and apes. The primate story begins in the canopy and understory of conifer-dominated forests, with our small, furtive ancestors subsisting at night, beneath the notice of day-active dinosaurs. From the archaic plesiadapiforms (archaic primates) to the earliest groups of true primates (euprimates), the origin of our own order is characterized by the struggle for new food sources and microhabitats in the arboreal setting. Climate change forced major extinctions as the northern continents became increasingly dry, cold, and seasonal and as tropical rainforests gave way to deciduous forests, woodlands, and eventually grasslands. Lemurs, lorises, and tarsiers—once diverse groups containing many species—became rare, except for lemurs in Madagascar where there were no anthropoid competitors and perhaps few predators. Meanwhile, anthropoids (monkeys and apes) emerged in the Old World, then dispersed across parts of the northern hemisphere, Africa, and ultimately South America. -
The Origin of Specificity by Means of Natural Selection: Evolved and Nonhost Resistance in Host–Pathogen Interactions
PERSPECTIVE doi:10.1111/j.1558-5646.2012.01793.x THE ORIGIN OF SPECIFICITY BY MEANS OF NATURAL SELECTION: EVOLVED AND NONHOST RESISTANCE IN HOST–PATHOGEN INTERACTIONS Janis Antonovics,1,2,3 Mike Boots,1,4 Dieter Ebert,1,5 Britt Koskella,1,4 Mary Poss,1,6 and Ben M. Sadd1,7 1Wissenschaftskolleg zu Berlin, Wallotstrasse 19, 14193 Berlin, Germany 2E-mail: [email protected] 3Current address: Department of Biology, University of Virginia, Charlottesville, Virginia 2290 4Current address: Biosciences, University of Exeter, Cornwall Campus, Penryn, Cornwall TR10 9EZ, United Kingdom 5Current address: University of Basel, Zoological Institute, Vesalgasse 1, CH-4051 Basel, Switzerland 6Current address: Department of Biology, Penn State University, University Park, Pennsylvania 16801 7Current address: Institute of Integrative Biology, ETH Zurich,¨ 8092 Zurich,¨ Switzerland Received March 7, 2012 Accepted August 9, 2012 Most species seem to be completely resistant to most pathogens and parasites. This resistance has been called “nonhost resistance” because it is exhibited by species that are considered not to be part of the normal host range of the pathogen. A conceptual model is presented suggesting that failure of infection on nonhosts may be an incidental by-product of pathogen evolution leading to specialization on their source hosts. This model is contrasted with resistance that results from hosts evolving to resist challenge by their pathogens, either as a result of coevolution with a persistent pathogen or as the result of one-sided evolution by the host against pathogens that are not self-sustaining on those hosts. Distinguishing evolved from nonevolved resistance leads to contrasting predictions regarding the relationship between resistance and genetic distance. -
Human Sexual Selection
Available online at www.sciencedirect.com ScienceDirect Human sexual selection David Puts Sexual selection favors traits that aid in competition over Here, I review evidence, focusing on recent findings, mates. Widespread monogamous mating, biparental care, regarding the strength and forms of sexual selection moderate body size sexual dimorphism, and low canine tooth operating over human evolution and consider how sexual dimorphism suggest modest sexual selection operating over selection has shaped human psychology, including psy- human evolution, but other evidence indicates that sexual chological sex differences. selection has actually been comparatively strong. Ancestral men probably competed for mates mainly by excluding The strength of human sexual selection competitors by force or threat, and women probably competed Some evidence suggests that sexual selection has been primarily by attracting mates. These and other forms of sexual relatively weak in humans. Although sexual dimorphisms selection shaped human anatomy and psychology, including in anatomy and behavior may arise from other selective some psychological sex differences. forces, the presence of sexually dimorphic ornamentation, Address weaponry, courtship displays, or intrasexual competition Department of Anthropology and Center for Brain, Behavior and indicates a history of sexual selection [3]. However, men’s Cognition, Pennsylvania State University, University Park, PA 16802, 15–20% greater body mass than women’s is comparable to USA primate species with a modest degree of mating competi- tion among males, and humans lack the canine tooth Corresponding author: Puts, David ([email protected]) dimorphism characteristic of many primates with intense male competition for mates [4]. Moreover, humans exhibit Current Opinion in Psychology 2015, 7:28–32 biparental care and social monogamy, which tend to occur This review comes from a themed issue on Evolutionary psychology in species with low levels of male mating competition [5].