A Memetic Framework for Cooperative Coevolution of Recurrent Neural Networks
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Biol B242 - Coevolution
BIOL B242 - COEVOLUTION http://www.ucl.ac.uk/~ucbhdjm/courses/b242/Coevol/Coevol.html BIOL B242 - COEVOLUTION So far ... In this course we have mainly discussed evolution within species, and evolution leading to speciation. Evolution by natural selection is caused by the interaction of populations/species with their environments. Today ... However, the environment of a species is always partly biotic. This brings up the possiblity that the "environment" itself may be evolving. Two or more species may in fact coevolve. And coevolution gives rise to some of the most interesting phenomena in nature. What is coevolution? At its most basic, coevolution is defined as evolution in two or more evolutionary entities brought about by reciprocal selective effects between the entities. The term was invented by Paul Ehrlich and Peter Raven in 1964 in a famous article: "Butterflies and plants: a study in coevolution", in which they showed how genera and families of butterflies depended for food on particular phylogenetic groupings of plants. We have already discussed some coevolutionary phenomena: For example, sex and recombination may have evolved because of a coevolutionary arms race between organisms and their parasites; the rate of evolution, and the likelihood of producing resistance to infection (in the hosts) and virulence (in the parasites) is enhanced by sex. We have also discussed sexual selection as a coevolutionary phenomenon between female choice and male secondary sexual traits. In this case, the coevolution is within a single species, but it is a kind of coevolution nonetheless. One of our problem sets involved frequency dependent selection between two types of players in an evolutionary "game". -
Implementation of a Memetic Algorithm to Optimize the Loading of Kilns for the Sanitary Ware Production
Implementation of a Memetic Algorithm to Optimize the Loading of Kilns for the Sanitary Ware Production Natalia Palomares1a, Rony Cueva1b, Manuel Tupia1c and Mariuxi Bruzza2d 1Department of Engineering, Pontificia Universidad Católica del Perú, Av. Universitaria 1801, Lima, Peru 2Faculty of Hospitality and Tourism, Universidad Laica “Eloy Alfaro” de Manabí, C. Universitaria S/N, Manabí, Ecuador {npalomares, cueva.r}@pucp.pe, [email protected], [email protected] Keywords: Memetic Algorithm, Combinatorial Optimization, Artificial Intelligence, Scheduling, Production Planning. Abstract: One of the most important aspects to be considered in the production lines of sanitaries is the optimization in the use of critical resources such as kilns (industrial furnaces) due to the complexity of their management (they are turned on twice a year) and the costs incurred. The manufacturing processes of products within these kilns require that the capacity be maximized by trying to reduce downtime. In this sense, Artificial Intelligence provides bioinspired and evolutionary optimization algorithms which can handle these complex variable scenarios, the memetic algorithms being one of the main means for task scheduling. In present investigation, and based on previous works of the authors, a memetic algorithm is presented for optimization in the loading of kilns starting from a real production line. 1 INTRODUCTION manufactured and assembled. That is why several researches have been conducted to develop The never-ending competition among the companies algorithm-based solutions that generate good results from the ceramic and sanitary ware manufacturing within reasonable times. industry has prompted these companies to seek to The most commonly used type of algorithms in improve their quality and efficiency in the production these cases are metaheuristic ones. -
Example for CIRAS Article
Ning, Z., Ong, Y.S., Wong, K.W. and Lim, M.H. (2003) Choice of memes in memetic algorithm. In: 2nd International Conference on Computational Intelligence, Robotics and Autonomous Systems (CIRAS 2003), Special Session on Optimization using Genetic, Evolutionary, Social and Behavioral Algorithms, 15 - 18 December, Singapore Choice of Memes In Memetic Algorithm Zhu Ning, Y. S. Ong, K. W. Wong and M. H. Lim School of Computer Engineering, Nanyang Technological University, Singapore {PG04169798, ASYSONG, ASKWWONG} @ntu.edu.sg School of Electrical and Electronic Engineering, Nanyang Technological University, Singapore [email protected] Abstract adaptively controlling several low-level heuristic search methods for use on each individual. But not much work One of the fastest growing areas of evolutionary has been carried out on the choice of successful memes algorithm research is the enhancement of genetic in memetic algorithms in the area of function algorithms by combination with local search methods or optimization. In this paper, our key focus is to investigate memes: often known otherwise as memetic algorithms. the choice of memes in hybrid genetic algorithm-local However there is often little theoretical basis on which to search or memetic algorithms. This paper is organized as characterize the choice of memes that lead to successful follows: Section 2 describes and outlines the memetic memetic algorithm performance. In this paper, we algorithms. Section 3 presents and compares the search investigate empirically the use of different memes in the performance of various memetic algorithms on a large memetic algorithms across a variety of benchmark test number of benchmark test functions commonly used in functions for function optimization. -
Evolutionary Cognitive Neuroscience Cognitive Neuroscience Michael S
MD DALIM #870693 9/24/06 GREEN PURPLE Evolutionary Cognitive Neuroscience Cognitive Neuroscience Michael S. Gazzaniga, editor Gary Lynch, Synapses, Circuits, and the Beginning of Memory Barry E. Stein and M. Alex Meredith, The Merging of the Senses Richard B. Ivry and Lynn C. Robertson, The Two Sides of Perception Steven J. Luck, An Introduction to the Event-Related Potential Technique Roberto Cabeza and Alan Kingstone, eds., Handbook of Functional Neuroimaging of Cognition Carl Senior, Tamara Russell, and Michael S. Gazzaniga, eds., Methods in Mind Steven M. Platek, Julian Paul Keenan, and Todd K. Shackelford, eds., Evolutionary Cognitive Neuroscience Evolutionary Cognitive Neuroscience Edited by Steven M. Platek, Julian Paul Keenan, and Todd K. Shackelford The MIT Press Cambridge, Massachusetts London, England © 2007 Massachusetts Institute of Technology All rights reserved. No part of this book may be reproduced in any form by any electronic or mechanical means (including photocopying, recording, or informa- tion storage and retrieval) without permission in writing from the publisher. MIT Press books may be purchased at special quantity discounts for business or sales promotional use. For information, please email special_sales@mitpress. mit.edu or write to Special Sales Department, The MIT Press, 55 Hayward Street, Cambridge, MA 02142. This book printed and bound in the United States of America. Library of Congress Cataloging-in-Publication Data Evolutionary cognitive neuroscience / edited by Steven M. Platek, Julian Paul Keenan, and Todd K. Shackelford. p. cm.—(Cognitive neuroscience) Includes bibliographical references and index. ISBN 13: 978-0-262-16241-8 ISBN 10: 0-262-16241-5 1. Cognitive neuroscience. 2. -
The Coevolution Theory of Autumn Colours Marco Archetti1* and Sam P
Received 3 December 2003 FirstCite Accepted 25 February 2004 e-publishing Published online The coevolution theory of autumn colours Marco Archetti1* and Sam P. Brown2 1De´partement de Biologie, Section E´ cologie et E´ volution, Universite´ de Fribourg, Chemin du Muse´e 10, 1700 Fribourg, Switzerland 2Department of Zoology, University of Cambridge, Downing Street, Cambridge CB2 3EJ, UK According to the coevolution theory of autumn colours, the bright colours of leaves in autumn are a warning signal to insects that lay their eggs on the trees in that season. If the colour is linked to the level of defensive commitment of the tree and the insects learn to avoid bright colours, this may lead to a coevolutionary process in which bright trees reduce their parasite load and choosy insects locate the most profitable hosts for the winter. We try to clarify what the theory actually says and to correct some misun- derstandings that have been put forward. We also review current research on autumn colours and discuss what needs to be done to test the theory. Keywords: autumn colours; coevolution; biological signalling; trees; evolution 1. INTRODUCTION that is also variable. Leaf abscission and senescence may be preadaptations to the phenomenon of autumn colours, Why do leaves change their colour in autumn? Bright aut- but they are by no means the same thing. umn colours occur in many deciduous tree species and The second is that bright colours are not just the effect are well known to everybody. However, an evolutionary of the degradation of chlorophyll, but new pigments are explanation to this question has only recently been put actively produced in autumn (Duggelin et al. -
Information Systems Theorizing Based on Evolutionary Psychology: an Interdisciplinary Review and Theory Integration Framework1
Kock/IS Theorizing Based on Evolutionary Psychology THEORY AND REVIEW INFORMATION SYSTEMS THEORIZING BASED ON EVOLUTIONARY PSYCHOLOGY: AN INTERDISCIPLINARY REVIEW AND THEORY INTEGRATION FRAMEWORK1 By: Ned Kock on one evolutionary information systems theory—media Division of International Business and Technology naturalness theory—previously developed as an alternative to Studies media richness theory, and one non-evolutionary information Texas A&M International University systems theory, channel expansion theory. 5201 University Boulevard Laredo, TX 78041 Keywords: Information systems, evolutionary psychology, U.S.A. theory development, media richness theory, media naturalness [email protected] theory, channel expansion theory Abstract Introduction Evolutionary psychology holds great promise as one of the possible pillars on which information systems theorizing can While information systems as a distinct area of research has take place. Arguably, evolutionary psychology can provide the potential to be a reference for other disciplines, it is the key to many counterintuitive predictions of behavior reasonable to argue that information systems theorizing can toward technology, because many of the evolved instincts that benefit from fresh new insights from other fields of inquiry, influence our behavior are below our level of conscious which may in turn enhance even more the reference potential awareness; often those instincts lead to behavioral responses of information systems (Baskerville and Myers 2002). After that are not self-evident. This paper provides a discussion of all, to be influential in other disciplines, information systems information systems theorizing based on evolutionary psych- research should address problems that are perceived as rele- ology, centered on key human evolution and evolutionary vant by scholars in those disciplines and in ways that are genetics concepts and notions. -
Evolution of Ideas: a Novel Memetic Algorithm Based on Semantic Networks
Evolution of Ideas: A Novel Memetic Algorithm Based on Semantic Networks Atılım Gunes¸Baydin¨ ∗y Ramon Lopez´ de Mantaras´ ∗ yDepartament d’Enginyeria de la Informacio´ i de les Comunicacions ∗Artificial Intelligence Research Institute, IIIA - CSIC Universitat Autonoma` de Barcelona Campus Universitat Autonoma` de Barcelona 08193 Bellaterra, Spain 08193 Bellaterra, Spain Email: [email protected] Email: [email protected] Abstract—This paper presents a new type of evolutionary each generation is followed by a local search, or learning, algorithm (EA) based on the concept of “meme”, where the performed by each candidate solution. For this reason, this individuals forming the population are represented by semantic approach has been often referred to under different names networks and the fitness measure is defined as a function of the represented knowledge. Our work can be classified as a novel besides MA, such as “hybrid EAs” or “Lamarckian EAs”. To memetic algorithm (MA), given that (1) it is the units of culture, date, MAs have been successfully applied to a wide variety of or information, that are undergoing variation, transmission, problem domains such as NP-hard optimization problems [7], and selection, very close to the original sense of memetics as [8], engineering [9], machine learning [10], [11], and robotics it was introduced by Dawkins; and (2) this is different from [12]. existing MA, where the idea of memetics has been utilized as a means of local refinement by individual learning after classical The aim of this study is to propose a computational model global sampling of EA. The individual pieces of information are comprising a meme pool subject to variation and selection represented as simple semantic networks that are directed graphs that will be able to evolve pieces of knowledge under a given of concepts and binary relations, going through variation by memetic fitness measure, paralleling the existing use of EA in memetic versions of operators such as crossover and mutation, which utilize knowledge from commonsense knowledge bases. -
A Novel Immune Optimization with Shuffled Frog Leaping Algorithm
A novel Immune Optimization with Shuffled Frog Leaping Algorithm - A Parallel Approach (P-AISFLA) Suresh Chittineni, ANS Pradeep, Dinesh Godavarthi, Suresh Chandra Satapathy Anil Neerukonda Institute of Technology and Sciences Sangivalasa, Vishakapatnam, Andhra Pradesh, India E-mail: {sureshchittineni, pradeep.6174, dinesh.coolguy222, sureshsatapathy} @gmail.com Abstract: Shuffled frog leaping Algorithm (SFLA) is a new algorithm is used to calculate the global optimal of complex memetic, local search, population based, Parameter free, optimization problems and proven to be one of robust and meta-heuristic algorithm that has emerged as one of the fast efficient algorithms [2]. and robust algorithm with efficient global search capability. On the other side Clonal Selection Algorithm (CSA) is SFLA has the advantage of social behavior through the an Artificial Immune System Technique (AIS) that is inspired by process of shuffling and leaping that helps for the infection of the functioning of Clonal selection theory of acquired immunity. ideas. Clonal Selection Algorithm (CSA) are computational The algorithm provides two mechanisms for searching for the paradigms that belong to the computational intelligence desired final pool of memory antibodies. The first is a local search family and is inspired by the biological immune system of the provided via affinity maturation (hyper mutation) of cloned human body. Cloning and Mutation mechanisms in CSA help antibodies [3]. The second search mechanism provides a global in attaining the global optimal. CSA has the advantages of scope and involves the insertion of randomly generated antibodies Innate and Adaptive Immunity mechanisms to antigenic to be inserted into the population to further increase the diversity stimulus that helps the cells to grow its population by the and provide a means for potentially escaping from local optimal process of cloning whenever required. -
Insufficient Emotion: Soul-Searching by a Former Indicter of Strong
Emotion Review Vol. 2, No. 3 (July 2010) 234–239 © 2010 SAGE Publications and The International Society for Research on Emotion Insufficient Emotion: Soul-searching by a Former ISSN 1754-0739 DOI: 10.1177/1754073910362598 Indicter of Strong Emotions er.sagepub.com George Loewenstein Department of Social & Decision Sciences, Carnegie Mellon University, USA Abstract Contrary to the many accounts of the destructive effects of strong emotions, this article argues that the most serious problems facing the world are caused by a deficiency rather than an excess of emotions. It then shows how an evolutionary account of emotion can explain when and why such deficiencies occur. Keywords decision making, emotion At that moment I was fully aware for the first time how far advanced the researchers have argued that these types of emotions are benefi- process of paralysis already was in me – it was if I were moving through cial, based on the finding that their absence, whether due to brain flowing, bright water without being halted or taking root anywhere, and I damage (Damasio, 1994) or experimental intervention (e.g., knew very well that this chill was something dead and corpse-like, not yet Wilson & Schooler, 1991) tends to degrade the quality of decision surrounded by the foul breath of decomposition but already numbed beyond recover, a grimly cold lack of emotions. making. Representing a similar perspective, there are myriad (Stefan Zweig, 1922 / 2004, p. 19) stories, presented in books such as The Gift of Fear: Survival Signals That Protect Us From Violence (De Becker, 1997), of Do emotions help or hurt decision making? This question has people who report having survived against the odds as a result of been the focus of much implicit and explicit debate. -
Oxytocin Is a Nonapeptide Involved in a Wide Range of Physiologic OXT Activity Depends on Adequate Interaction with Its Unique and Behavioral Functions
Evolutionary pattern in the OXT-OXTR system in primates: Coevolution and positive selection footprints Pedro Vargas-Pinillaa,1, Vanessa Rodrigues Paixão-Côrtesa,1, Pamela Paréa, Luciana Tovo-Rodriguesa, Carlos Meton de Alencar Gadelha Vieiraa, Agatha Xaviera, David Comasb, Alcides Pissinattic, Marialva Sinigagliaa, Maurício Menegatti Rigoa, Gustavo Fioravanti Vieiraa, Aldo B. Luciond, Francisco Mauro Salzanoa,2, and Maria Cátira Bortolinia,2 aDepartamento de Genética, Instituto de Biociências, Universidade Federal do Rio Grande do Sul, 91501-970 Porto Alegre, RS, Brazil; bInstitut de Biologia Evolutiva, Departament de Ciències Experimentals i de la Salut, Universitat Pompeu Fabra, 08003 Barcelona, Spain; cCentro de Primatologia do Rio de Janeiro, 20940-200 Rio de Janeiro, RJ, Brazil; and dDepartamento de Fisiologia, Instituto de Ciências Básicas da Saúde, Universidade Federal do Rio Grande do Sul, 90050-170 Porto Alegre, RS, Brazil Contributed by Francisco Mauro Salzano, November 26, 2014 (sent for review July 11, 2014; reviewed by Guido Barbujani and Rafal Slusarz) Oxytocin is a nonapeptide involved in a wide range of physiologic OXT activity depends on adequate interaction with its unique and behavioral functions. Until recently, it was believed that an receptor, OXTR, although it can also bind to the vasopressin unmodified oxytocin sequence was present in all placental mam- receptors (AVPR1a, AVPR1b, and AVPR2) with lower affinity mals. This study analyzed oxytocin (OXT) in 29 primate species and (11–13). Similar to other receptors that use G proteins as OXTR the oxytocin receptor ( ) in 21 of these species. We report transducer signals across the cell membranes, OXTR is com- here three novel OXT forms in the New World monkeys, as well posed of seven transmembrane (TM1–TM7), four extracellular as a more extensive distribution of a previously described variant (N-terminal tail-ECL3), and four intracellular (ICL1-C-terminal (Leu8Pro). -
8. Primate Evolution
8. Primate Evolution Jonathan M. G. Perry, Ph.D., The Johns Hopkins University School of Medicine Stephanie L. Canington, B.A., The Johns Hopkins University School of Medicine Learning Objectives • Understand the major trends in primate evolution from the origin of primates to the origin of our own species • Learn about primate adaptations and how they characterize major primate groups • Discuss the kinds of evidence that anthropologists use to find out how extinct primates are related to each other and to living primates • Recognize how the changing geography and climate of Earth have influenced where and when primates have thrived or gone extinct The first fifty million years of primate evolution was a series of adaptive radiations leading to the diversification of the earliest lemurs, monkeys, and apes. The primate story begins in the canopy and understory of conifer-dominated forests, with our small, furtive ancestors subsisting at night, beneath the notice of day-active dinosaurs. From the archaic plesiadapiforms (archaic primates) to the earliest groups of true primates (euprimates), the origin of our own order is characterized by the struggle for new food sources and microhabitats in the arboreal setting. Climate change forced major extinctions as the northern continents became increasingly dry, cold, and seasonal and as tropical rainforests gave way to deciduous forests, woodlands, and eventually grasslands. Lemurs, lorises, and tarsiers—once diverse groups containing many species—became rare, except for lemurs in Madagascar where there were no anthropoid competitors and perhaps few predators. Meanwhile, anthropoids (monkeys and apes) emerged in the Old World, then dispersed across parts of the northern hemisphere, Africa, and ultimately South America. -
Memetic Algorithms for Continuous Optimisation Based on Local Search Chains
Memetic Algorithms for Continuous Optimisation Based on Local Search Chains Daniel Molina [email protected] Department of Computer Engineering, University of Cadiz, Cadiz, 11003, Spain Manuel Lozano [email protected] Department of Computer Science and Artificial Intelligence, University of Granada, 18071, Granada, Spain Carlos Garcıa-Mart´ ınez´ [email protected] Department of Computing and Numerical Analysis, University of Cordoba,´ 14071, Cordoba,´ Spain Francisco Herrera [email protected] Department of Computer Science and Artificial Intelligence, University of Granada, 18071, Granada, Spain Abstract Memetic algorithms with continuous local search methods have arisen as effective tools to address the difficulty of obtaining reliable solutions of high precision for complex continuous optimisation problems. There exists a group of continuous local search algorithms that stand out as exceptional local search optimisers. However, on some occasions, they may become very expensive, because of the way they exploit local information to guide the search process. In this paper, they are called intensive con- tinuous local search methods. Given the potential of this type of local optimisation methods, it is interesting to build prospective memetic algorithm models with them. This paper presents the concept of local search chain as a springboard to design memetic algorithm approaches that can effectively use intense continuous local search methods as local search operators. Local search chain concerns the idea that, at one stage, the local search operator may continue the operation of a previous invocation, starting from the final configuration (initial solution, strategy parameter values, inter- nal variables, etc.) reached by this one. The proposed memetic algorithm favours the formation of local search chains during the memetic algorithm run with the aim of con- centrating local tuning in search regions showing promise.