2614-2625 Research Article Synthon Disconnection Strategy for Th
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Available online www.jocpr.com Journal of Chemical and Pharmaceutical Research, 2012, 4(5):2614-2625 ISSN : 0975-7384 Research Article CODEN(USA) : JCPRC5 Synthon Disconnection Strategy for the Synthesis Design of “Coelenterazine”- A Bioluminescent Marine Natural Product used in Bioassays Chittaranjan Bhanja 1*, Subhendu Chakroborty 2 1Department of Chemistry, Utkal University, Bhubaneswar-751004, Odisha, India 2Department of Chemistry, Ravenshaw University, Cuttack-753003, Odisha, India _________________________________________________________________________________ ABSTRACT Synthon disconnection strategy is a problem solving technique in the planning of organic syntheses. This strategy, developed by Prof. E.J.Corey of Harvard University, plays vital role in the synthesis design of many bioactive natural products used in analytical biochemistry, molecular biology and drug discovery process. Keeping an overview on the published works in both journals and patent literatures, a good number of synthesis schemes have been proposed based on this strategy for a bioluminescent natural product ‘Coelenterazine’ isolated from marine organism jellyfish Aequorea victoria that finds extensive applications in bioassays. The proposed synthesis planning being a theoretical investigation, the actual laboratory execution requires the cross examination of a considerable number of factors such as reactions, reagents and order of events. In actual practice, generally that route is most feasible which is cost-effective, safe, and easy to carry out and gives maximum yield in a short reaction time. Keywords: Anti-oxidant, Bioassays, Bioluminescence, Coelenterazine, Synthon disconnection strategy, Retrosynthetic analysis. _________________________________________________________________________________ INTRODUCTION Organic synthesis is one of the major activities of organic chemists and the planning of synthesis is an intellectual task where chemist’s imagination, art, creativity and knowledge need to be explored. The simplest synthesis of a molecule is one in which the target molecule can be obtained by submitting a readily available starting material to a single reaction that converts it to the desired target molecule. However, in most cases the synthesis is not straightforward; in order to convert a chosen starting material to the target molecule, numerous steps that add, change, or remove functional groups and steps that build up the carbon atom framework of the target molecule may need to be done. A systematic approach for designing synthetic routes to a molecule is promulgated as a result of Prof. E.J.Corey’s developments of ‘synthon disconnection approach’/‘retrosynthetic analysis’[1-3]. Retrosynthetic analysis is a protocol of stepwise breaking of target molecule to starting materials by disconnection of bonds and functional group interchange to a sequence of progressively simpler structures along a pathway just reverse of actual synthesis. Every disconnected part is an idealized fragment, called ‘synthon’. The synthons when joined by known or conceivable synthetic operations result in the formation of target molecule (TM). Retrosynthetic analysis of a target molecule usually results in more than one possible synthetic route. It is therefore necessary to critically assess each derived route in order to choose the single route that is most feasible. In actual practice, generally that route is selected which is cost-effective, safe (the toxicity and reactivity hazards associated with the reactions involved), and 2614 Chittaranjan Bhanja et al J. Chem. Pharm. Res., 2012, 4(5):2614-2625 ______________________________________________________________________________ easy to carry out and produces maximum yield in a short reaction time, when assessing alternative synthetic routes to a molecule. Organic compounds from marine organisms serve as compounds of interest both in their natural form and as templates for design and discovery of bioactive compounds that play important role in analytical biochemistry, molecular biology and drug discovery process. [4-9]. Bioluminescence is the production and emission of light by a living organism as the result of a chemical reaction during which chemical energy is converted to light energy. This phenomenon is exhibited by many marine organisms such as the sea pansy Renilla reniformis , the deep-sea shrimp Oplophorus gracilirostris , jellyfish Aequorea victoria , the squid Watasenia and hydroid Obelia [10-13]. and has been used extensively in different formats for life science research and drug discovery owing to its extremely high sensitivity and nonhazardous nature. The luminescent system of the jellyfish Aequorea victoria consists of the photoprotein aequorin, which contains the molecule “Coelenterazine” fig.1 as a prosthetic group and shows considerable potential in this area. The bioluminescence reaction of coelenterazine involves an oxidative process with molecular oxygen to produce the emission of light. In bioluminescent applications, coelenterazine has been used with the photoprotein aequorin and its recombinant analogues to monitor Ca 2+ concentrations in mammalian cells[14].Analogues of coelenterazine are also used with aequorin to study ion channels and tyrosine kinase receptors[15] Furthermore, fluorescence resonance energy transfer (FRET) assays that use coelenterazine to detect protein-protein interactions have been developed[16]. Aside from being a luminescent compound, Coelenterazine has also been studied for its anti-oxidant properties for protection against the oxygen toxicity in the environment [17]. Coelenterazine is distributed in a very small amount in its natural sources due to which the quantitative extraction and purification is a very difficult task. Therefore, synthetic methodologies for rapid access of this molecule and its templates are highly essential in synthetic organic chemistry/medicinal chemistry, for a better understanding of its chemiluminescent properties and applications in analytical biochemistry. O OH N N N H HO Figure I: Coelenterazine Although a few methods of synthesis of Coelenterazine are well documented in literature [18], some alternative synthetic routs are still required for its commercial success. Keeping an overview on the published works both in journals and patent literatures, an effort has been made to propose a good number of synthesis schemes for Coelenterazine based on synthon disconnection approach /retrosynthetic analysis. To the best of our knowledge, this type of work has not been reported earlier. The choice of this molecule for synthesis planning is obvious as bioassays are routinely works in life science research related to drug discovery. In this profit oriented world, the chemical/ pharmaceutical industries are also vibrant today in search of cost effective scalable synthesis. Moreover with the availability new reagents, chemical reactions, sophisticated new methods of laboratory execution and the application of synthon approach to analyse the target molecules leading to several routes have made it possible to rethink their synthesis for the improvement in existing processes to satisfy the commercial need. EXPERIMENTAL SECTION The structure and information about Coelenterazine as bioluminescent candid has been collected from different books [1, 2]. The proposed synthesis plannings are then exploited in a novel way from the result of its retrosynthetic analysis using the basic principle outlined in the pioneering works of Prof. E.J. Corey. The symbols and abbreviations are synonymous to that represented in book [3].The analysis–synthesis schemes being theoretical propositions; obviously the syntheses have not been executed in the laboratory. The actual laboratory execution requires the cross examination of a considerable number of factors such as reagents, reactions, order of events, economical viability, environmental benign, saftyness, short time and scalable synthesis. 2615 Chittaranjan Bhanja et al J. Chem. Pharm. Res., 2012, 4(5):2614-2625 ______________________________________________________________________________ RESULTS AND DISCUSSION Retrosynthetic Analysis: 1 O O OMe N OH N N N N NH C-N 2 FGI amide H OMe N N N H Protection H C=N + HO MeO imine O O TM 1 MeO 2 3 N NH2 N NH2 N NH2 Me N NH2 C-C BuSn3 FGI C-C N + Br N N + N MeO MeO 2 4 5 6 7 8 OEt S S H OMe FGI S OMe C-C O + Li OMe O O S O S S 3 9 10 11 12 Synthesis: 1 CH N NH N NH N NH2 3 2 2 MeO BuSn N NH2 3 n-BuLi Bu4NBr3,Py 4 + N N CHCl ,r.t. Br N N THF 3 Pd(PPh3)4 5 MeO 2 8 7 6 DMF OEt O S n-BuLi S OMe HgCl ,CH CN Li 10 S OMe 2 3 H OMe S Ca(CO ) H O S 3 2, 2 O O S O 9 3 12 11 O O N NH 2 OMe OH H OMe Con.HCl N N aq.HCl N N + N (TM) O O EtOH,reflux 1,4-dioxane 2 3 N N MeO 1 H H MeO HO Scheme: 1 Regioselective alkylation of 2-amino pyrazin 8 with benzyllithium prepared from toluene 6 & n-butyl lithium in THF, forms 2-amino-3-benzylpyrazine 6. Selective bromination of 6 using tetra-n-butylammonium tribromide(Sato’s method)[19] produces 3-benzyl-5-bromo-2 aminopyrazine 5. Treatment of 5 with organostannane reagent 4 in presence of Pd(PPh 3)4 in DMF undergoes Stille coupling to form 2. p-methoxyphenylglyoxal 3 is prepared from ethyl p-methoxyphenyl acetate 10 by exploring dithiane based-route. Coupling of 2 with glyoxal 3 under acidic condition forms 1.Deprotection of methyl ether group of 1 under mild acidic condition forms the target molecule (TM ). 2616 Chittaranjan Bhanja et al J. Chem. Pharm. Res., 2012, 4(5):2614-2625 ______________________________________________________________________________