Amide Activation: an Emerging Tool for Chemoselective Synthesis
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Part I: Carbonyl-Olefin Metathesis of Norbornene
Part I: Carbonyl-Olefin Metathesis of Norbornene Part II: Cyclopropenimine-Catalyzed Asymmetric Michael Reactions Zara Maxine Seibel Submitted in partial fulfillment of the requirements for the degree of Doctor of Philosophy in the Graduate School of Arts and Sciences COLUMBIA UNIVERSITY 2016 1 © 2016 Zara Maxine Seibel All Rights Reserved 2 ABSTRACT Part I: Carbonyl-Olefin Metathesis of Norbornene Part II: Cyclopropenimine-Catalyzed Asymmetric Michael Reactions Zara Maxine Seibel This thesis details progress towards the development of an organocatalytic carbonyl- olefin metathesis of norbornene. This transformation has not previously been done catalytically and has not been done in practical manner with stepwise or stoichiometric processes. Building on the previous work of the Lambert lab on the metathesis of cyclopropene and an aldehyde using a hydrazine catalyst, this work discusses efforts to expand to the less stained norbornene. Computational and experimental studies on the catalytic cycle are discussed, including detailed experimental work on how various factors affect the difficult cycloreversion step. The second portion of this thesis details the use of chiral cyclopropenimine bases as catalysts for asymmetric Michael reactions. The Lambert lab has previously developed chiral cyclopropenimine bases for glycine imine nucleophiles. The scope of these catalysts was expanded to include glycine imine derivatives in which the nitrogen atom was replaced with a carbon atom, and to include imines derived from other amino acids. i Table of Contents List of Abbreviations…………………………………………………………………………..iv Part I: Carbonyl-Olefin Metathesis…………………………………………………………… 1 Chapter 1 – Metathesis Reactions of Double Bonds………………………………………….. 1 Introduction………………………………………………………………………………. 1 Olefin Metathesis………………………………………………………………………… 2 Wittig Reaction…………………………………………………………………………... 6 Tebbe Olefination………………………………………………………………………... 9 Carbonyl-Olefin Metathesis……………………………………………………………. -
Modern Organic Synthesis an Introduction
Modern Organic Synthesis an Introduction G. S. Zweifel M. H. Nantz W.H. Freeman and Company Chapter 1 Synthetic Design • What is an ideal or viable synthesis, and how does one approach a synthetic project? • The overriding concern in a synthesis is the yield, including the inherent concepts of simplicity (fewest steps) and selectivity (chemoselectivity, regioselectivity, diastereoselectivity, and enantioselectivity). • This chapter outlines strategies for the synthesis of target molecules based on retrosynthetic analysis. 1 1.1 Retrosynthetic Analysis Basic Concept The symbol signifies a reverse synthetic step and is called atransform. The main transforms are disconnections, or cleavage of C-C bonds, and functional group interconversions (FGI) Retrosynthetic analysis involves the disassembly of a TM into available starting materials by sequential disconnections and functional group interconversions(FGI). Synthons are fragments resulting from disconnection of carbon-carbon bonds of the TM. The actual substrates used for the forward synthesis are the synthetic equivalents (SE). Synthetic design involves two distinct steps (1) Retrosynthetic analysis (2) Subsequent translation of the analysis into a “forward direction” synthesis. Chemical bonds can be cleaved heterolytically, homolytically, or through concerted transform. 2 Donor and Acceptor Synthons Acceptor synthon Æ carbocation (electrophilic) Donor synthon Æ carbanion (nucleophilic) Table 1.1 Common Acceptor Synthon Synthetic equivalents Common Acceptor Synthon Synthetic equivalents 3 Table 1.2 Common Donor Synthons Common Donor Synthon Synthetic equivalents Retrosynthetic Analysis A Synthesis A 4 Retrosynthetic Analysis B Synthesis B Alternating Polarity Disconnections The presence of a heteroatom in a molecule imparts a pattern of electrophilicity and nucleophilicity to the atom of the molecule. The concept of alternating polarities or latent polarities (imaginary chargies) often enables one to identify the best positions to make a disconnection within a complex molecule. -
Protokoll Handledarmöte 2020-02-14
http://www.diva-portal.org Postprint This is the accepted version of a paper published in Organic Letters. This paper has been peer-reviewed but does not include the final publisher proof-corrections or journal pagination. Citation for the original published paper (version of record): Colas, K., dos Santos, A C., Mendoza, A. (2019) i-Pr2-NMgCl·LiCl Enables the Synthesis of Ketones by Direct Addition of Grignard Reagents to Carboxylate Anions Organic Letters, 21(19): 7908-7913 https://doi.org/10.1021/acs.orglett.9b02899 Access to the published version may require subscription. N.B. When citing this work, cite the original published paper. Permanent link to this version: http://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-175818 i-Pr2NMgCl·LiCl Enables the Synthesis of Ketones by Direct Addi- tion of Grignard Reagents to Carboxylate Anions Kilian Colas, A. Catarina V. D. dos Santos and Abraham Mendoza* Department of Organic Chemistry, Stockholm University, Arrhenius Laboratory, 106 91 Stockholm (Sweden) Supporting Information Placeholder direct Grignard - carboxylate coupling 1 R MgX + i-Pr2NMgCl•LiCl 1 MgX ( ) R * CO2 i-Pr i-Pr L L O [Mg] N O ideal ( ) * Mg Li (*) sources 1 1 2 R O Cl R R R2 L O ketone [proposed structure] products base R1 OH [in-situ from commercial] ◾ >30 examples ◾ scalable ◾ facile isotopic-labelling ABSTRACT: The direct preparation of ketones from carboxylate anions is greatly limited by the required use of organolithium reagents or activated acyl sources that need to be independently prepared. Herein, a specific magnesium amide additive is used to activate and control the addition of more tolerant Grignard reagents to carboxylate anions. -
Stereochemistry, Alkyl Halide Substitution (SN1 & SN2)
Chem 261 Assignment & Lecture Outline 3: Stereochemistry, Alkyl Halide Substitution (SN1 & SN2) Read Organic Chemistry, Solomons, Fryle & Snyder 12th Edition (Electronic) • Functional Group List – Learn to recognize – Please see Green Handout – also p 76 of text • Periodic Table – Inside Front Cover - know 1st 10 elements (up through Neon) • Relative Strength of Acids and Bases – Inside Front cover (reference only) • Chapter 5 – Stereochemistry • Chapter 6 –Ionic Reactions: Nucleophilic Substitution of Alkyl Halides Problems: Do Not turn in, answers available in "Study Guide Student Solutions Manual " Solomons, Fryle, Snyder • Chapter 5: 5.1 to 5.15; 5.18 to 5.21; 5.26; 5.28; 5.33a-d; 5.46 • Chapter 6: 6.1 to 6.5; 6.7 to 6.10; 6.13; 6.20; 6.26; 6.27 Lecture Outline # 3 I. Comparison of 2 Structures: Same Molecular Formula ? -> If Yes, Possibly Isomers or Identical Same Arrangement (Sequence) of Groups ? If No -> Structural Isomers If Yes -> Superposable? If Yes -> Identical Structures If No -> Stereoisomers Non-Superposable Mirror Images ? If NO -> Diastereomers If Yes -> Enantiomers II. Chirality and Stereoisomers A. The Concept of Chirality 1. Identification of chiral objects a) achiral = not chiral b) planes of symmetry within a molecule 2. Types of stereoisomers – enantiomers and diastereomers B. Location of stereogenic (chiral) centres – 4 different groups on tetrahedral atom 1. Enantiomers & diastereomers 2. Meso compounds - chiral centers with plane of symmetry within molecule 3. Molecules with more than one chiral centre 4. Recognition of chiral centers in complex molecules - cholesterol - 8 chiral centres Drawing the enantiomer of cholesterol and its potential 255 stereoisomers 5. -
Amide, and Paratoluenesulfonamide on the Amide of Silver,On the Imides
68 CHEMISTRY: E. C. FRANKLIN METALLIC SALTS OF AMMONO ACIDS By Edward C. Franklin DEPARTMENT OF CHEMISTRY, STANFORD UNIVERSITY Presented to the Academy, January 9. 1915 The Action of Liquid-Ammonia Solutions of Ammono Acids on Metallic Amides, Imides, and Nitrides. The acid amides and imides, and the metallic derivatives of the acid amides and imides are the acds, bases, and salts respectively of an ammonia system of acids, bases, and salts.1 Guided by the relationships implied in the above statement Franklin and Stafford were able to prepare potassium derivatives of a considerable number of acid amides by the action of potassium amide on certain acid amides in solution in liquid ammonia. That is to say, an ammono base, potassium amide, was found to react with ammono acids in liquid ammonia to form ammono salts just as the aquo base, potassium hydrox- ide, acts upon aquo acids in water solution to form aquo salts. Choos- ing, for example, benzamide and benzoic acid as representative acids of the two systems, the analogous reactions taking place respectively in liquid ammonia and water are represented by the equations: CH6CONH2+KNH2 = C6H5CONHK + NHs. CseHCONH2 + 2KNH2 = CIHsCONK2 + 2NH3. CH6tCOOH + KOH = CIH6COOK + H2O. The ammono acid, since it is dibasic, reacts with either one or two molecules of potassium amide to form an acid and a neutral salt. Having thus demonstrated the possibility of preparing ammono salts of potassium by the interaction of potassium amide and acid amides in liquid ammonia solution, it was further found that ammono salts of the heavy metals may be prepared by the action of liquid ammonia solutions of ammono acids on insoluble metallic amides, imides, and nitrides-that is, by reactions which are analogous to the formation of aquo salts in water by the action of potassium hydroxide on insoluble metallic hydroxides and oxides. -
Reactions of Benzene & Its Derivatives
Organic Lecture Series ReactionsReactions ofof BenzeneBenzene && ItsIts DerivativesDerivatives Chapter 22 1 Organic Lecture Series Reactions of Benzene The most characteristic reaction of aromatic compounds is substitution at a ring carbon: Halogenation: FeCl3 H + Cl2 Cl + HCl Chlorobenzene Nitration: H2 SO4 HNO+ HNO3 2 + H2 O Nitrobenzene 2 Organic Lecture Series Reactions of Benzene Sulfonation: H 2 SO4 HSO+ SO3 3 H Benzenesulfonic acid Alkylation: AlX3 H + RX R + HX An alkylbenzene Acylation: O O AlX H + RCX 3 CR + HX An acylbenzene 3 Organic Lecture Series Carbon-Carbon Bond Formations: R RCl AlCl3 Arenes Alkylbenzenes 4 Organic Lecture Series Electrophilic Aromatic Substitution • Electrophilic aromatic substitution: a reaction in which a hydrogen atom of an aromatic ring is replaced by an electrophile H E + + + E + H • In this section: – several common types of electrophiles – how each is generated – the mechanism by which each replaces hydrogen 5 Organic Lecture Series EAS: General Mechanism • A general mechanism slow, rate + determining H Step 1: H + E+ E El e ctro - Resonance-stabilized phile cation intermediate + H fast Step 2: E + H+ E • Key question: What is the electrophile and how is it generated? 6 Organic Lecture Series + + 7 Organic Lecture Series Chlorination Step 1: formation of a chloronium ion Cl Cl + + - - Cl Cl+ Fe Cl Cl Cl Fe Cl Cl Fe Cl4 Cl Cl Chlorine Ferric chloride A molecular complex An ion pair (a Lewis (a Lewis with a positive charge containing a base) acid) on ch lorine ch loronium ion Step 2: attack of -
Pentachloride Hazard Summary Identification
Common Name: PHOSPHORUS PENTACHLORIDE CAS Number: 10026-13-8 RTK Substance number: 1525 DOT Number: UN 1806 Date: August 1999 ----------------------------------------------------------------------- ----------------------------------------------------------------------- HAZARD SUMMARY * Phosphorus Pentachloride can affect you when breathed * Exposure to hazardous substances should be routinely in. evaluated. This may include collecting personal and area * Phosphorus Pentachloride is a CORROSIVE air samples. You can obtain copies of sampling results CHEMICAL and contact can severely irritate and burn the from your employer. You have a legal right to this skin and eyes with possible eye damage. information under OSHA 1910.1020. * Breathing Phosphorus Pentachloride can irritate the nose * If you think you are experiencing any work-related health and throat. problems, see a doctor trained to recognize occupational * Breathing Phosphorus Pentachloride can irritate the diseases. Take this Fact Sheet with you. lungs causing coughing and/or shortness of breath. Higher exposures can cause a build-up of fluid in the lungs WORKPLACE EXPOSURE LIMITS (pulmonary edema), a medical emergency, with severe OSHA: The legal airborne permissible exposure limit shortness of breath. (PEL) is 1 mg/m3 averaged over an 8-hour * Exposure to Phosphorus Pentachloride can cause workshift. headache, dizziness, weakness, nausea and vomiting. * Phosphorus Pentachloride may damage the liver and NIOSH: The recommended airborne exposure limit is kidneys. 1 mg/m3 averaged over a 10-hour workshift. * Phosphorus Pentachloride is a REACTIVE CHEMICAL and an EXPLOSION HAZARD. ACGIH: The recommended airborne exposure limit is 0.85 mg/m3 averaged over an 8-hour workshift. IDENTIFICATION Phosphorus Pentachloride is a white to pale yellow, WAYS OF REDUCING EXPOSURE crystalline solid with a pungent odor. -
Synthesis Infographic (Revised)
Organic Synthesis A problem–solving guide for Organic Chemistry I/II ? Goal: propose a synthesis of a target molecule H OH N using given starting materials and any other N reagents you need. starting target materials molecule These key strategies should guide your approach:1 Mapping • Systematically label all the atoms in the ? 1 starting materials, then identify those atoms in H OH N 6 N the target molecule 2 4 5 7 6 1 3 5 7 2 3 4 • Use landmarks (heteroatoms, functional groups) to help you Identifying bonds formed/broken ? and atoms added/removed H OH 1 N 6 N Having labeled atoms, it becomes easier to see: 2 4 5 7 6 1 3 5 7 2 3 4 bonds formed: C7–N2 σ, C6–O σ atoms added • where bonds have been formed/broken bonds broken: C6–C7 π atoms removed • where atoms (including protons) have been added/removed ? Regiochemical and stereochemical analysis H OH 1 N 6 N 2 4 5 7 6 • Look for regiochemical patterns that can 1 3 5 7 2 3 4 provide ideas for synthetic strategies target molecule is 1,2–difunctionalized at C6–C7 • Look for changes in configuration at C7–N2 bond formed at less substituted C of propylene stereocenters (not always applicable) reaction: base–catalyzed epoxide opening 1 OH OH 1 Synthon-based retrosynthetic analysis N + N 6 2 4 6 2 4 Construct hypothetical starting materials for 5 7 3 5 7 3 • synthons forming required bonds 1 This process is called constructing synthons, O δ- • + + HN 6 6 δ 2 4 and it is the basis of retrosynthetic analysis 5 7 5 7 3 possible reagents • Synthons are a tool for choosing reagents 1Based in part on strategies observed in successful students’ responses to synthetic Flynn Research Group 2017 – FlynnResearchGroup.com problems on exams; see: Bodé, N. -
Detection of Phenethylamine, Amphetamine, and Tryptamine Imine By-Products from an Acetone Extraction
Detection of Phenethylamine, Amphetamine, and Tryptamine Imine By-Products from an Acetone Extraction Mary A. Yohannan* and Arthur Berrier U.S. Department of Justice Drug Enforcement Administration Special Testing and Research Laboratory 22624 Dulles Summit Court Dulles, VA 20166 [email: mary.a.yohannan -at- usdoj.gov] ABSTRACT: The formation of imine by-products from phenethylamines, amphetamines, and tryptamines upon an acetone extraction is presented. These imine by-products were characterized using GC/MSD and exhibited preferential cleavage at the α-carbon of the alkyl chain. Further characterization of the imine by-products of phenethylamine and tryptamine was done using IR and NMR. KEYWORDS: phenethylamine, tryptamine, imine, acetone, schiff base, drug chemistry, forensic chemistry In most forensic laboratories, the solvents used to extract at the α-carbon on the alkyl chain. In addition to GC/MS, the drugs are chosen based upon their solubility properties and their imines formed from phenethylamine base and tryptamine base ability to not interact with the drug. In fact, there are very few were characterized by Fourier transform-infrared spectroscopy publications where a solvent used to extract a drug reacts with (FTIR) and nuclear magnetic resonance (NMR) spectroscopy. the drug and forms by-products [1-3]. This laboratory recently discovered that an additional Experimental component was formed when acetone was used to extract a Solvents, Chemicals, and Materials sample containing a known tryptamine. Analysis by gas Acetone was ACS/HPLC grade from Burdick and Jackson chromatography/mass spectroscopy (GC/MS) of the acetone Laboratories (Muskegon, MI). Phenethylamine base and extract yielded an extra peak in the total ion chromatogram that tryptamine base were obtained from Sigma-Aldrich Chemicals was approximately half the abundance of the known tryptamine (Milwaukee, WI). -
Pcls' Pocl3-VMR Patent Application Publication May 21, 2009 US 2009/0131653 A1
US 20090131653A1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2009/0131653 A1 Ratnam et al. (43) Pub. Date: May 21, 2009 (54) GENERATION OF PHOSPHORUS (86) PCT No.: PCT/IN2006/000151 OXYCHLORIDE AS BY-PRODUCT FROM PHOSPHORUS PENTACHLORIDE AND DMF § 371 (OX1), AND ITS USE FOR CHLORINATION (2), (4) Date/1 Dec- 31, 2007 REACTION BY CONVERTING INTO (30) Foreign Application Priority Data VILSMEIER-HAACK REAGENT May 4, 2005 (IN) ......................... .. 545/MUM/2005 (75) Inventors: Rakesh Ratnam, Maharashtra (IN); Publication Classi?cation Aurora Sundeep, Maharashtra (51) Int Cl SE1); M‘illzamgifd M0?zuddm’ C07H 1/00 (2006.01) “as ra( ) 0070251/30 (2006.01) C d Add (52) US. Cl. ....................................... .. 536/124; 564/278 orrespon ence ress: THENATHLAWGROUP (57) ABSTRACT 112 south West street A process is described Wherein after formation of ?rst crop of AleXandria, VA 22314 (Us) Vilsmeier-Haack reagent by reacting Phosphorus Pentachlo ride With N,N-dimethylformamide to form a ?rst crop of 73 A - ; PHARMEDMEDICARE Vilsmeier rea g ent as insoluble c rY stals ’ a b YP- roduct of this ( ) sslgnee PRIVATE LIMITED Mumbai reaction, the Phosphorus Oxy-Chloride, reacts With N,N (IN) ’ dimethylformamide to give a second crop of Vilsmeier reagent. This second crop of Vilsmeier reagent is soluble in DMF. This process makes it possible to double the yield of (21) APP1- N04 11/919,826 chlorinated substrate, such as sucrose-6-acetate or sucrose-6 benZoate, from the same quantity of Phosphorus Pentachlo (22) PCT Filed: Apr. 28, 2006 ride : Mechanism of Combined Vilsmeier Reagent for the Chlorination of sugars. -
United States Patent Office
Patented May 31, 1949 2,471,472 UNITED STATES2,471.472 PATENT OFFICE METHOD OF FORMING PHOSPHONIC AND THOPHOSPHONCACD CHLORDES Willard H. Woodstock, Flossmoor, Ill., assignor to Victor Chemical Works, a corporation of Illinois No Drawing. Application April 28, 1945, Seria No. 590,956 6 Claims. (CI. 260-543) 1. 2 This invention relates to a method of form phonic acids. Such chloroalkyl esters and ing phosphorus compounds and the resulting alkenyl-1-phosphonic esters above methyl are new compounds, as are the phosphorus oxydi products,of alkenyl and phosphorus more particularly oxydichlorides to East and sulfo chloride compounds themselves. dichlorides from addition products of olefins and In Formula. A R represents an alkyl or aryl phosphorus pentachloride. group, and X represents hydrogen or alkyl or Unsymmetrical olefins, having a terminal aryl grOp. double bond, react with PCls to form phosphorus In Formula. B R is a normal alkyl group. addition products, and these addition products Suitable olefins for the (A) reaction include may then be reacted with phosphorus pentasul O styrene, alpha methyl styrene, alpha chloroSty fide or phosphorus pentoxide. rene, indene, isobutylene, 2.2.diphenyl ethylene, Type A olefins which have two alkyl groups di-isobutylene, and the isoalkylenes where two or an aryl group attached to the 2-carbon gen carbon atoms are attached to the number 2 car erally react with phosphorus pentachloride to bon. Such isoalkylenes include isoamylenes, iso add -Cl to the 2-carbon and -PCl4 to the 1.- . heptenes, iso-octenes, etc. carbon. Type B olefins which have only one Starting hydrocarbons of the (B) type include alkyl group on the 2-carbon atom generally re propylene, buttene-1, pentene-1, octene-1, etc. -
The Carcinogenicity of the O-Methoxy Derivatives of N-2-Fluorenylacetamide and of Related Compounds in the Rat
[CANCER RESEARCH 28, 234-244, February 1968] The Carcinogenicity of the o-Methoxy Derivatives of N-2-Fluorenylacetamide and of Related Compounds in the Rat H. R. Gutmann, S. B. Galitski, and W. A. Foley Laboratory ]or Cancer Research, Veterans Administration Hospital, and Department o] Biochemistry, University o] Minnesota, Minneapolis, Minnesota 55417 SUMMARY acetamide by the sequential reactions of deacetylation and oxidation. In order to test the idea that the lack of carcinogenicity of the o-amidofluorenols, N- (1-hydroxy-2-fluorenyl) acetamide and INTRODUCTION N-(3-hydroxy-2-fluorenyl)acetamide, is due to the hydrophilic phenolic hydroxyl group, the methylated derivatives, N-(1- Several model studies from this laboratory have shown that methoxy-2-fluorenyl)acetamide and N-(3-methoxy-2-fluorenyl) the o-quinone imines, 2-imino-l,2-fluorenoquinone and 2-imino- acetamide as well as the hydrochlorides of 1-methoxy-2-fluo- 2,3-fluorenoquinone, which are derived from the carcinogen renamine and 3-methoxy-2-fiuorenamine, were prepared, and N-2-fluorenylacetamide by the sequential enzymatic reactions their carcinogenicity was evaluated in the rat. N-(1-Methoxy- of hydroxylation, deacetylation, and oxidation (6, 10, 12, 27, 2-fluorenyl)acetamide and 1-methoxy-2-fluorenamine hydro- 34, 35), form stable adducts with a variety of proteins (17, 18). chloride, when administered orally to male rats for 5 months, However, the relevance of the binding of these o-quinone imines gave a tumor incidence of 27 and 50%, respectively. Approxi- to chemical carcinogenesis has remained obscure largely be- mately one-half of the lesions produced by either com- cause the o-amidofluorenols, 1-OH-AAF 2 and 3-OH-AAF pound were adenocarcinomas of the small intestine.