Enantioselective Synthesis of Oasomycin[Emsp14]A, Part II
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Modern Organic Synthesis an Introduction
Modern Organic Synthesis an Introduction G. S. Zweifel M. H. Nantz W.H. Freeman and Company Chapter 1 Synthetic Design • What is an ideal or viable synthesis, and how does one approach a synthetic project? • The overriding concern in a synthesis is the yield, including the inherent concepts of simplicity (fewest steps) and selectivity (chemoselectivity, regioselectivity, diastereoselectivity, and enantioselectivity). • This chapter outlines strategies for the synthesis of target molecules based on retrosynthetic analysis. 1 1.1 Retrosynthetic Analysis Basic Concept The symbol signifies a reverse synthetic step and is called atransform. The main transforms are disconnections, or cleavage of C-C bonds, and functional group interconversions (FGI) Retrosynthetic analysis involves the disassembly of a TM into available starting materials by sequential disconnections and functional group interconversions(FGI). Synthons are fragments resulting from disconnection of carbon-carbon bonds of the TM. The actual substrates used for the forward synthesis are the synthetic equivalents (SE). Synthetic design involves two distinct steps (1) Retrosynthetic analysis (2) Subsequent translation of the analysis into a “forward direction” synthesis. Chemical bonds can be cleaved heterolytically, homolytically, or through concerted transform. 2 Donor and Acceptor Synthons Acceptor synthon Æ carbocation (electrophilic) Donor synthon Æ carbanion (nucleophilic) Table 1.1 Common Acceptor Synthon Synthetic equivalents Common Acceptor Synthon Synthetic equivalents 3 Table 1.2 Common Donor Synthons Common Donor Synthon Synthetic equivalents Retrosynthetic Analysis A Synthesis A 4 Retrosynthetic Analysis B Synthesis B Alternating Polarity Disconnections The presence of a heteroatom in a molecule imparts a pattern of electrophilicity and nucleophilicity to the atom of the molecule. The concept of alternating polarities or latent polarities (imaginary chargies) often enables one to identify the best positions to make a disconnection within a complex molecule. -
Protokoll Handledarmöte 2020-02-14
http://www.diva-portal.org Postprint This is the accepted version of a paper published in Organic Letters. This paper has been peer-reviewed but does not include the final publisher proof-corrections or journal pagination. Citation for the original published paper (version of record): Colas, K., dos Santos, A C., Mendoza, A. (2019) i-Pr2-NMgCl·LiCl Enables the Synthesis of Ketones by Direct Addition of Grignard Reagents to Carboxylate Anions Organic Letters, 21(19): 7908-7913 https://doi.org/10.1021/acs.orglett.9b02899 Access to the published version may require subscription. N.B. When citing this work, cite the original published paper. Permanent link to this version: http://urn.kb.se/resolve?urn=urn:nbn:se:su:diva-175818 i-Pr2NMgCl·LiCl Enables the Synthesis of Ketones by Direct Addi- tion of Grignard Reagents to Carboxylate Anions Kilian Colas, A. Catarina V. D. dos Santos and Abraham Mendoza* Department of Organic Chemistry, Stockholm University, Arrhenius Laboratory, 106 91 Stockholm (Sweden) Supporting Information Placeholder direct Grignard - carboxylate coupling 1 R MgX + i-Pr2NMgCl•LiCl 1 MgX ( ) R * CO2 i-Pr i-Pr L L O [Mg] N O ideal ( ) * Mg Li (*) sources 1 1 2 R O Cl R R R2 L O ketone [proposed structure] products base R1 OH [in-situ from commercial] ◾ >30 examples ◾ scalable ◾ facile isotopic-labelling ABSTRACT: The direct preparation of ketones from carboxylate anions is greatly limited by the required use of organolithium reagents or activated acyl sources that need to be independently prepared. Herein, a specific magnesium amide additive is used to activate and control the addition of more tolerant Grignard reagents to carboxylate anions. -
Amide Activation: an Emerging Tool for Chemoselective Synthesis
Featuring work from the research group of Professor As featured in: Nuno Maulide, University of Vienna, Vienna, Austria Amide activation: an emerging tool for chemoselective synthesis Let them stand out of the crowd – Amide activation enables the chemoselective modification of a large variety of molecules while leaving many other functional groups untouched, making it attractive for the synthesis of sophisticated targets. This issue features a review on this emerging field and its application in total synthesis. See Nuno Maulide et al., Chem. Soc. Rev., 2018, 47, 7899. rsc.li/chem-soc-rev Registered charity number: 207890 Chem Soc Rev View Article Online REVIEW ARTICLE View Journal | View Issue Amide activation: an emerging tool for chemoselective synthesis Cite this: Chem. Soc. Rev., 2018, 47,7899 Daniel Kaiser, Adriano Bauer, Miran Lemmerer and Nuno Maulide * It is textbook knowledge that carboxamides benefit from increased stabilisation of the electrophilic carbonyl carbon when compared to other carbonyl and carboxyl derivatives. This results in a considerably reduced reactivity towards nucleophiles. Accordingly, a perception has been developed of amides as significantly less useful functional handles than their ester and acid chloride counterparts. Received 27th April 2018 However, a significant body of research on the selective activation of amides to achieve powerful DOI: 10.1039/c8cs00335a transformations under mild conditions has emerged over the past decades. This review article aims at placing electrophilic amide activation in both a historical context and in that of natural product rsc.li/chem-soc-rev synthesis, highlighting the synthetic applications and the potential of this approach. Creative Commons Attribution 3.0 Unported Licence. -
Synthesis Infographic (Revised)
Organic Synthesis A problem–solving guide for Organic Chemistry I/II ? Goal: propose a synthesis of a target molecule H OH N using given starting materials and any other N reagents you need. starting target materials molecule These key strategies should guide your approach:1 Mapping • Systematically label all the atoms in the ? 1 starting materials, then identify those atoms in H OH N 6 N the target molecule 2 4 5 7 6 1 3 5 7 2 3 4 • Use landmarks (heteroatoms, functional groups) to help you Identifying bonds formed/broken ? and atoms added/removed H OH 1 N 6 N Having labeled atoms, it becomes easier to see: 2 4 5 7 6 1 3 5 7 2 3 4 bonds formed: C7–N2 σ, C6–O σ atoms added • where bonds have been formed/broken bonds broken: C6–C7 π atoms removed • where atoms (including protons) have been added/removed ? Regiochemical and stereochemical analysis H OH 1 N 6 N 2 4 5 7 6 • Look for regiochemical patterns that can 1 3 5 7 2 3 4 provide ideas for synthetic strategies target molecule is 1,2–difunctionalized at C6–C7 • Look for changes in configuration at C7–N2 bond formed at less substituted C of propylene stereocenters (not always applicable) reaction: base–catalyzed epoxide opening 1 OH OH 1 Synthon-based retrosynthetic analysis N + N 6 2 4 6 2 4 Construct hypothetical starting materials for 5 7 3 5 7 3 • synthons forming required bonds 1 This process is called constructing synthons, O δ- • + + HN 6 6 δ 2 4 and it is the basis of retrosynthetic analysis 5 7 5 7 3 possible reagents • Synthons are a tool for choosing reagents 1Based in part on strategies observed in successful students’ responses to synthetic Flynn Research Group 2017 – FlynnResearchGroup.com problems on exams; see: Bodé, N. -
Bsc Chemistry
__________________________________________________________________________________________________ Subject Chemistry Paper No and Title 14: Organic Chemistry –IV (Advance Organic Synthesis and Supramolecular Chemistry and carbocyclic rings) Module No and 2: Synthons, Synthetic equivalents and Title Retrosynthetic analysis Module Tag CHE_P14_M2 CHEMISTRY Paper No. 14: Organic Chemistry –IV (Advance Organic Synthesis and Supramolecular Chemistry and carbocyclic rings) Module No. 2: Synthons, Synthetic equivalents and Retrosynthetic analysis __________________________________________________________________________________________________ TABLE OF CONTENTS 1. Learning Outcomes 2. Introduction 3. Synthons and Synthetic equivalents 4. Retrosynthetic analysis 5. Summary CHEMISTRY Paper No. 14: Organic Chemistry –IV (Advance Organic Synthesis and Supramolecular Chemistry and carbocyclic rings) Module No. 2: Synthons, Synthetic equivalents and Retrosynthetic analysis __________________________________________________________________________________________________ 1. Learning Outcomes After studying this module, you shall be able to: Know about synthons Know about synthetic equivalents Know about retrosynthetic analysis. Study the steps involved in retrosynthetic analysis. Know the routine for designing the synthesis. 2. Introduction Organic chemistry is a branch of chemistry which deals with the study of carbon and its compounds. The study includes the understanding of synthesis, structure, properties, and reactions of organic compounds. -
CHEM 4000 Topic 2: Functional Group Oriented Bond-Sets
CHEMISTRY 4000 Topic #2: Functional Group Oriented Bond-Sets Spring 2019 Dr. Susan Findlay Synthons for Polar Bond Formation Once we identify a bond-set (set of retrosynthetic disconnections), we have to be able to generate a corresponding set of forward reactions. (So much so that knowledge of an available set of forward reactions will have heavily influenced choice of bond-set.) Usually, the forward reaction is a polar bond formation so it involves a nucleophile and an electrophile. First, identify which of the two pieces will serve as nucleophile and which will serve as electrophile. X – X C – + H C or + 2 ? In this example, one option should appear substantially better than the other. In some cases, both options are feasible – but you still have to choose one to try first! 2 Synthons for Polar Bond Formation The functional groups in the target will tend to dictate which piece serves as the nucleophile and which serves as the electrophile (hence the term ‘functional group oriented bond-set’). Each piece is referred to as a synthon. The nucleophilic piece is the donor synthon (or d-synthon). The electrophilic piece is the acceptor synthon (or a-synthon). In the example on the previous page, the aromatic ring dictated the choice of donor and acceptor synthons. What if, instead of disconnecting next to the aromatic ring, we had chosen to disconnect at the next C-C bond in the chain? 3 Synthons for Polar Bond Formation Consider the influence of a carbonyl group on a nearby retrosynthetic disconnection. There are three reasonable choices for disconnections in the vicinity of a carbonyl: O O X – + H C 2 O O – C H 2 + X O O – + H C 2 4 See the end of this set of notes for more on reactions corresponding to the third disconnection. -
Dulaneyspr15.Pdf (409.1Kb)
Adventures in Organophosphorus Chemistry James W. Dulaney, III (Faculty Mentor: David E. Lewis) Department of Chemistry, University of Wisconsin-Eau Claire, Eau Claire, WI 54702-4004 Background Challenges with the Mitsunobu reaction What is required in a replacement to make the reaction Azodicarboxylates, an important component of the re- “green”? Organophosphorus compounds have been an increasingly important part of organic synthesis since the discovery action, are very hazardous: of the Arbuzov rearrangement in 1905. In the century that followed this discovery, the applications of phosphorus- O Green? based reagents in synthesis has grown to incorporate the Wittig and Horner-Wadsworth-Emmons reactions for OEt • They are highly explosive (especially diethyl azodi- N alkene formation, as well as the Mitsunobu inversion reaction, which is used to convert alcohols to a wide range carboxylate). N Green reactions are run under more environmentally sustainable conditions with a view to of products with inversion of configuration. O minimizing environmental impact: • They are highly toxic (especially diethyl azodicar- OEt boxylate). diethyl azodicarboxylate • They are highly regulated. (DEAD) • Wherever possible, renewable sources are used • Wherever possible, hazardous materials are eliminated completely or replaced by The Wittig reaction Ph Ph Ph BuLi Ph less hazardous materials P R P R Regulations have been put into place by the DOT that O Ph Ph O-i-Pr • Wherever possibler, catalytic reactions are used Reaction between an ylide and an aldehyde or ketone to give an alkene. make azodicarboxylic esters even more difficult to ob- N • Hazardous waste is minimized wherever possible (e.g. organic solvents can be re- Reaction gives mainly the Z isomer with aldehydes O tain and use. -
Working with Hazardous Chemicals
A Publication of Reliable Methods for the Preparation of Organic Compounds Working with Hazardous Chemicals The procedures in Organic Syntheses are intended for use only by persons with proper training in experimental organic chemistry. All hazardous materials should be handled using the standard procedures for work with chemicals described in references such as "Prudent Practices in the Laboratory" (The National Academies Press, Washington, D.C., 2011; the full text can be accessed free of charge at http://www.nap.edu/catalog.php?record_id=12654). All chemical waste should be disposed of in accordance with local regulations. For general guidelines for the management of chemical waste, see Chapter 8 of Prudent Practices. In some articles in Organic Syntheses, chemical-specific hazards are highlighted in red “Caution Notes” within a procedure. It is important to recognize that the absence of a caution note does not imply that no significant hazards are associated with the chemicals involved in that procedure. Prior to performing a reaction, a thorough risk assessment should be carried out that includes a review of the potential hazards associated with each chemical and experimental operation on the scale that is planned for the procedure. Guidelines for carrying out a risk assessment and for analyzing the hazards associated with chemicals can be found in Chapter 4 of Prudent Practices. The procedures described in Organic Syntheses are provided as published and are conducted at one's own risk. Organic Syntheses, Inc., its Editors, and its Board of Directors do not warrant or guarantee the safety of individuals using these procedures and hereby disclaim any liability for any injuries or damages claimed to have resulted from or related in any way to the procedures herein. -
2614-2625 Research Article Synthon Disconnection Strategy for Th
Available online www.jocpr.com Journal of Chemical and Pharmaceutical Research, 2012, 4(5):2614-2625 ISSN : 0975-7384 Research Article CODEN(USA) : JCPRC5 Synthon Disconnection Strategy for the Synthesis Design of “Coelenterazine”- A Bioluminescent Marine Natural Product used in Bioassays Chittaranjan Bhanja 1*, Subhendu Chakroborty 2 1Department of Chemistry, Utkal University, Bhubaneswar-751004, Odisha, India 2Department of Chemistry, Ravenshaw University, Cuttack-753003, Odisha, India _________________________________________________________________________________ ABSTRACT Synthon disconnection strategy is a problem solving technique in the planning of organic syntheses. This strategy, developed by Prof. E.J.Corey of Harvard University, plays vital role in the synthesis design of many bioactive natural products used in analytical biochemistry, molecular biology and drug discovery process. Keeping an overview on the published works in both journals and patent literatures, a good number of synthesis schemes have been proposed based on this strategy for a bioluminescent natural product ‘Coelenterazine’ isolated from marine organism jellyfish Aequorea victoria that finds extensive applications in bioassays. The proposed synthesis planning being a theoretical investigation, the actual laboratory execution requires the cross examination of a considerable number of factors such as reactions, reagents and order of events. In actual practice, generally that route is most feasible which is cost-effective, safe, and easy to carry out and gives maximum yield in a short reaction time. Keywords: Anti-oxidant, Bioassays, Bioluminescence, Coelenterazine, Synthon disconnection strategy, Retrosynthetic analysis. _________________________________________________________________________________ INTRODUCTION Organic synthesis is one of the major activities of organic chemists and the planning of synthesis is an intellectual task where chemist’s imagination, art, creativity and knowledge need to be explored. -
Synthi: a New Open-Source Tool for Synthon-Based Library Design
Preprint___________________________ SynthI: a new open-source tool for synthon-based library design Yuliana Zabolotna1, Dmitriy M.Volochnyuk3,6, Sergey V.Ryabukhin4,6, Kostiantyn Gavrylenko5,6, Dragos Horvath1, Klimchuk Olga1, Olexandre Oksiuta3,7, Gilles Marcou1, Alexandre Varnek1,2 * ____________________________________________________________________________________________ Abstract: Most of the existing computational tools for library design are focused on the generation, rational selection, and combination of promising structural motifs to form members of the new library. However, the absence of a direct link between the chemical space of the retrosynthetically generated fragments and the pool of available reagents makes such approaches appear as rather theoretical and reality-disconnected. In this context, here we present a new open-source toolkit for library design, called Synthons Interpreter or SynthI that allows merging those two chemical spaces into a single synthons space. Here synthons are defined as the actual fragments with valid valences and special labels, defining the position and nature of reactive centers. They can be issued from either the “break-up” of reference compounds according to retrosynthetic rules, or real reagents/BBs, after leaving groups transformation. Such an approach not only enables the design of synthetically accessible libraries and analogs generation but also facilitates BB analysis in the medicinal chemistry context. SynthI code is available in https://github.com/Laboratoire-de-Chemoinformatique/SynthI -
Organic Synthesis Using Carbon Dioxide As Phosgene-Free Carbonyl Reagent*
Pure Appl. Chem., Vol. 84, No. 3, pp. 581–602, 2012. http://dx.doi.org/10.1351/PAC-CON-11-05-04 © 2011 IUPAC, Publication date (Web): 1 September 2011 Organic synthesis using carbon dioxide as phosgene-free carbonyl reagent* An-Hua Liu, Yu-Nong Li, and Liang-Nian He‡ State Key Laboratory and Institute of Elemento-Organic Chemistry, Nankai University, Tianjin 300071, China Abstract:CO2 is very attractive as a typical renewable feedstock for manufacturing com- modity chemicals, fuel, and materials since it is an abundant, nontoxic, nonflammable, and easily available C1 resource. The development of greener chemical methodologies for replac- ing the utility of hazardous and environmentally undesirable phosgene largely relies on ingenious activation and incorporation of CO2 into valuable compounds, which is of para- mount importance from a standpoint of green chemistry and sustainable development. Great efforts have been devoted to constructing C–C, C–O, and C–N bond on the basis of CO2 acti- vation through molecular catalysis owing to its kinetic and thermodynamic stability. The aim of this article is to demonstrate the versatile use of CO2 in organic synthesis as the alterna- tive carbonyl source of phosgene, with the main focus on utilization of CO2 as phosgene replacement for the synthesis of value-added compounds such as cyclic carbonates, oxa - zolidinones, ureas, isocyanates, and polymers, affording greener pathways for future chemi- cal processes. Keywords: atom economy; aziridines; carbon dioxide; carbonylation; catalysis; green chemistry; ionic liquids; organic carbonate; phosgene-free process; urea. INTRODUCTION CO2 as an abundant, nontoxic, easily available, and typical renewable C1 source as well as an impor- tant “greenhouse” gas has been drawing more and more attention in line with the need for development of green chemistry and a sustainable society. -
Diethyl Azodicarboxylate, Conventionally Abbreviated As DEAD and Sometimes As DEADCAT, Is an Organic Compound with the Structural Formula
DBU • 1,5-Diazabicyclo[5.4.0]undec-7-ene, or more commonly DBU, is a chemical compound and belongs to the class of amidine compounds. • It is used in organic synthesis as a catalyst, a complexing ligand, and a non-nucleophilic base. • . It is also used as a curing agent for epoxy. • It is used in fullerene purification with trimethylbenzene (it reacts with C 70 and higher fullerenes, but not to C 60 fullerenes) • It is also used as a catalyst in polyurethane production. • It has a strong catalyst effect for the reactions of alicyclic and aliphatic isocyanates. • It also exhibited its dual character (base and nucleophile) in the synthesis of aryl- and styryl-terminal acetylenes. DEAD • Diethyl azodicarboxylate, conventionally abbreviated as DEAD and sometimes as DEADCAT, is an organic compound with the structural formula CH3CH2O2CN=NCO2CH2CH3. Its molecular structure consists of a central azo functional group, RN=NR, flanked by two ethyl ester groups. • It is an oxidising agent • This orange-red liquid is a valuable reagent but also quite dangerous and explodes upon heating. • Therefore, commercial shipment of pure diethyl azodicarboxylate is prohibited in the United States and is carried out either in solution or on polystyrene particles. • DEAD is an aza-dienophile and an efficient dehydrogenating agent, converting alcohols to aldehydes, thiols to disulfides and hydrazo groups to azo groups; it is also a good electron acceptor. • DEAD dissolves in most common organic solvents, such as toluene, chloroform, ethanol, tetrahydrofuran and dichloromethane but has low solubility in water or carbon tetrachloride; the solubility in water is higher for the related azo compound dimethyl azodicarboxylate.