Adipose Tissue Metabolism: Role Of

Total Page:16

File Type:pdf, Size:1020Kb

Adipose Tissue Metabolism: Role Of ADIPOSE TISSUE METABOLISM: ROLE OF CALCIUM AND CYCLIC NUCLEOTIDES IN INSULIN ACTION THESIS SUBMITTED FOR THE DEGREE OF DOCTOR OF PHILOSOPHY (Ph.D) IN CLINICAL BIOCHEMISTRY BY NADARAJEN VYDELINGUM BSc; MSc DEPARTMENT OF HUMAN METABOLISM ST. MARYtS HOSPITAL MEDICAL SCHOOL LONDON UNIVERSITY OF LONDON 1978 DEDICATED TO ROSEMARY ACKNOWLEDGEMENTS I would like to thank Dr, A.H. Kissebah for his guidance, inspiration and continuous encouragement throughout the course of this project. I am also very grateful for his unfailing efforts and his scientific comments during the preparation of the manuscript. My thanks to Professor V. Wynn for extending the facilities of the laboratories in the Department of Metabolic Medicine for the completion of the project. I am especially grateful to Mrs. C. Bair for the excellent typing and retyping of the countless scripts and her enthusiastic willingness to participate in the compilation of this work. Finally, I wish to thank my wife, Rosemary, for the critical evaluation of the literary style and for her invaluable support over the years. ABBREVIATIONS qtr l ATP -. Adenosine 5kphosphate ATP-ase - Adenosine triphosphatase c-AMP - Cyclic 3':5'-Adenosine Monophosphate c-GMP - Cyclic 3':5'-Guanosine Monophosphate Ca2+ - Calcium ion CPM - Counts Per Minute DBc-AMP - Dibutyryl-c-AMP DNA - Deoxyribose Nucleic Acid DPiEI - Disintegrations Per Minute -au+t;np el ehr-)~ N v EGTA - Ethylene Glycol etra-acetic Acid FFA - Free Fatty Acid La3+ - Lanthanum Leu - Leucine LPL - Lipoprotein Lipase Mol - Mole M - Molar mRNA - Messenger Ribonucleic Acid - Oxid`sed Nicotinamide Adenine Dinucleotide NAD} r NADH - Reduced Nicotinamide Adenine Dinucleotide PDE - Phosphodiesterase PEP - Phosphoenolpyruvate PPO - 2,5-Diphenyloxazole; a primary fluor TCA - Trichloroacetic Acid TEAM - Triethanolamine &ris TRIS -Ilsydroxy methyl) Amino Methane VLDL - Very Low Density Lipoprotein TABLE OF CONTENTS Page ACKNOWLEDGEMENTS ABBREVIATIONS ii ABSTRACT 1 CHAPTER I INTRODUCTION AND REVIEW OF THE LITERATURE A. The Adipocyte as a Source of Fuel.... 3 B. Hormonal Regulation of Fat Mobilization and Storage 1. The Catecholamines 14 (a)Adrenergic Receptors 14 (b)Adrenergic Effects and c-AMP 18 2. Insulin 18 (a)Insulin Receptors 19 (b)Adipose Tissue Response to Insulin 21 C. Subcellular Mode of Insulin Action 1. The Modulation of Plasma Membrane by Insulin 23 2. Insulin Second Messenger 23 D. The Role of Calcium Ions 34 CHAPTER II MATERIALS AND METHODS Materials 39 Methods A. Preparation and Incubation Conditions for Fat Cells 41 B. Preparation and Incubation Conditions for Fat Tissue Pieces 44 C. Cyclic-AMP Assay 47 D. Cyclic-GMP Assay . 54 E. Glycerol Assay 59 F. Lipoprotein Lipase (LPL) Assay 65 G. Measurement of 3H-Leu Incorporation into Fat Cell Protein 71 H. Ester Assay 76 CHAPTER III HORMONAL REGULATION OF FAT CELL LIPOLYSIS: RELATION OF C-AMP AND CALCIU1 TO THE EFFECTS OF ADRENALINE AND INSULIN I. Background and Objectives 80 II. Experimental Procedures 84 III. Results 87 IV. Discussion . A. Relation between c-AMP and Hormonal Regulation of Lipolysis 116 B. Relation of Ca2+ to the Effects of Adrenaline and Insulin on Lipolysis 125 CHAPTER IV HORMONAL REGULATION OF LIPOPROTEIN LIPASE ACTIVITY AND PROTEIN SYNTHESIS: RELATION OF C-GMP AND CA2+ IONS TO INSULIN ACTION I. Background and Objectives 150 II. Experimental Procedures and Results 152 III. Discussion A. Insulin, Protein Synthesis and LPL Activity 186 B. Relation of c-GMP to the Effects of Insulin on Protein Synthesis and LPL Activity 194 C. Relation of Cato the Effects of Insulin on c-GMP, Protein Synthesis and LPL Activity 198 CHAPTER V General Conclusion 205 CHAPTER VI Bibliography 210 Publications from Thesis 226 Addendum - Selected Papers from the Author's Bibliography which are Relevant to the Thesis 227 ABSTRACT The hypothesis that the cellular effects of insulin may be mediated by changes in intracellular calcium concentration has been re-examined in vitro using isolated rat fat cells. The effects of alteration in extracellular and/or intracellular calcium concentration on insulin reg- ulation of lipolysis, protein synthesis and lipoprotein lipase activity and their relation to c-AMP and c-GMP levels were studied. When fat cells were incubated with adrenaline an early and transient rise in c-AMP level was observed which was followed by a gradual increase in lipolysis. Insulin inhibited the adrenaline stimulated lipolysis but this occurred without any detectable reduction in c-AMP levels. Incuba- tion of cells in media without added calcium did not alter the antilipo- lytic effect of insulin whereas pretreatment of fat cells with EGTA to deplete intracellular calcium abolished the inhibitory effect of insulin on lipolysis. In addition, the calcium ionophore A23187 and lanthanum chloride, agents which facilitate an increase in cellular calcium con- centration, like insulin, inhibited lipolysis in the fat cells. These results suggest that the anticatabolic effect (inhibition of lipolysis) of insulin on fat cells is not associated with a reduction in c-AMP level while changes in intracellular calcium level markedly influence this response. Insulin produced a dose-dependent stimulation of protein synthesis and lipoprotein lipase activity in fat cells and fat tissue pieces, re- spectively. Both processes were associated with an early and transient rise in c-GMP level. Omission of calcium from the medium did not alter the tissue's response to insulin while on depletion of intracellular calcium with EGTA, the effects of insulin were no longer discernible. Addition of calcium ionophore A23187 or lanthanum chloride to adipose tissue incubates, like insulin, stimulated protein synthesis and -2- lipoprotein lipase activity and caused a significant rise in c-GMP level. These findings indicate that the anabolic effects of insulin on protein synthesis and lipoprotein lipase activity are associated with a rise in adipose tissue c-GMP and that these effects are also mediated through alteration in cellular calcium level. CHAPTER I INTRODUCTION AND REVIEW OF LITERATURE -3- INTRODUCTION A. The Adipocyte as a Source of Fuel The adipose tissue consists of a variety of cells, among these it is the adipocytes which function as the storage compartment for fat. The major fraction of the cell is the single lipid droplet located in the center of the cell surrounded by a thin film of cytoplasm within which the nucleus lies (see Figure 1). The adipocytes have an organelle sys- tem which is common to most mammalian cells. Fat tissue is a highly active organ, although its relative activity depends on the species and on the anatomical origin of the tissue within a given animal. Since the adipocyte is a major target cell for many hor- mones such as adrenaline and insulin, the plasma membrane contains a variety of surface receptors for these hormones. It appears that the antilipolytic effects of insulin on adipose tis- sue are specialized evolutionary development restricted primarily to pre- datory animals which are adapted to sporadic feeding habits (Fritz 1961). Moreover, the need for an efficient storage organ as a source of energy during periods of food deprivation seems to have coincided with the de- velopment of homoiothermy. To permit prolonged survival during a time of food deprivation, it is essential that certain cells store energy in a convenient form. This energy is obtained from the food ingested dur- ing periods of caloric excess. The fuel reserve is primarily in the form of triacylglycerol, more than 98% of which is in the adipose tissue (Havel _ 1972). It is considerably more efficient to store energy as fat than as glycogen or protein. The triacylglycerol present in the lipid droplet of the adipocyte does not require the accumulation of water and ions. Fat not only occupies less volume, but weighs less per calorie of stored chem- k4 ical energy than carbohydrate or protein. Thus, glycogen yields lkcalorie ao per 800 mg whereas ljc lorie is obtained from 125 mg of triacylglycerol. 0 f ***MM. FIGURE 1 • Electron micrographs of white adipose cell. Rat tissue pieces were pre- fixed in Karnowski's solution and post-fixed in 1% osmium tetroxide made up in 0.1 M PO4 buffer. The following structures are identified: bulk lipid storage compartment, L; cytoplasmic compartment, C; mitochondria, M; plasma membrane (PM), poor- ly preserved due to fixation ārtifact; (Mag x 5Ō00). -5- Moreover, a 70 kg man has a total fuel reserve of approximately 166,000 Kcal; 141,000 as lipid; 24,000 as protein; and 1,000 as carbohydrate (Cahill 1970), yet only 10% of his total body weight is made up as fat. From the above consideration, it appears that man can withstand severe caloric deprivation without total loss of metabolic activity. The de- velopment of this highly efficient form of energy storage allows man to survive starvation for approximately 30 days provided he has a supply of water (Wertheimer 1965). During the fasting state fatty acids are the prime source of energy for metabolic activity (Gordon et al 1956). To mobil` e fuel stored in the adipose tissue for use elsewhere, the stored triacylglycerol is hydrolyzed to free fatty acid (FFA) and glycerol (Heindel et al 1975) (see Figure 2). Since the glycero-kinase (EC 2.7.1.30) activity in white adipose tissue is low, most of the glycerol formed during lipolysis cannot be re-utilized but is released to the blood (Persico et al 1975). In contrast, FFA can be released from the adipocyte or be re-esterified and re-deposited as triacylglycerol. The extent of the re-esterifica- tion depends upon the availability of glycerophosphate from glucose or gluconeogenesis (Reshef et al 1970). The rate of blood flow to the adi- pose tissue is probably another factor which influences the rate of re- lease of the lipolytic products (Mayerle et al 1969, Neilsen et al 1969). The rate limiting step of lipolysis appears to be the conversion of triacylglycerol to diacylglycerol and FFA (Strand et al 1964).
Recommended publications
  • The Role of Genetic Variation in Predisposition to Alcohol-Related Chronic Pancreatitis
    The Role of Genetic Variation in Predisposition to Alcohol-related Chronic Pancreatitis Thesis submitted in accordance with the requirements of the University of Liverpool for the degree of Doctor in Philosophy by Marianne Lucy Johnstone April 2015 The Role of Genetic Variation in Predisposition to Alcohol-related Chronic Pancreatitis 2015 Abstract Background Chronic pancreatitis (CP) is a disease of fibrosis of the pancreas for which alcohol is the main causative agent. However, only a small proportion of alcoholics develop chronic pancreatitis. Genetic polymorphism may affect pancreatitis risk. Aim To determine the factors required to classify a chronic pancreatic population and identify genetic variations that may explain why only some alcoholics develop chronic pancreatitis. Methods The most appropriate method of diagnosing CP was assessed using a systematic review. Genetics of different populations of alcohol-related chronic pancreatitics (ACP) were explored using four different techniques: genome-wide association study (GWAS); custom arrays; PCR of variable nucleotide tandem repeats (VNTR) and next generation sequencing (NGS) of selected genes. Results EUS and sMR were identified as giving the overall best sensitivity and specificity for diagnosing CP. GWAS revealed two associations with CP (identified and replicated) at PRSS1-PRSS2_rs10273639 (OR 0.73, 95% CI 0.68-0.79) and X-linked CLDN2_rs12688220 (OR 1.39, 1.28-1.49) and the association was more pronounced in the ACP group (OR 0.56, 0.48-0.64)and OR 2.11, 1.84-2.42). The previously identified VNTR in CEL was shown to have a lower frequency of the normal repeat in ACP than alcoholic liver disease (ALD; OR 0.61, 0.41-0.93).
    [Show full text]
  • Regulation of Signaling and Metabolism by Lipin-Mediated Phosphatidic Acid Phosphohydrolase Activity
    biomolecules Review Regulation of Signaling and Metabolism by Lipin-mediated Phosphatidic Acid Phosphohydrolase Activity Andrew J. Lutkewitte and Brian N. Finck * Center for Human Nutrition, Division of Geriatrics and Nutritional Sciences, Department of Medicine, Washington University School of Medicine, Euclid Avenue, Campus Box 8031, St. Louis, MO 63110, USA; [email protected] * Correspondence: bfi[email protected]; Tel: +1-3143628963 Received: 4 September 2020; Accepted: 24 September 2020; Published: 29 September 2020 Abstract: Phosphatidic acid (PA) is a glycerophospholipid intermediate in the triglyceride synthesis pathway that has incredibly important structural functions as a component of cell membranes and dynamic effects on intracellular and intercellular signaling pathways. Although there are many pathways to synthesize and degrade PA, a family of PA phosphohydrolases (lipin family proteins) that generate diacylglycerol constitute the primary pathway for PA incorporation into triglycerides. Previously, it was believed that the pool of PA used to synthesize triglyceride was distinct, compartmentalized, and did not widely intersect with signaling pathways. However, we now know that modulating the activity of lipin 1 has profound effects on signaling in a variety of cell types. Indeed, in most tissues except adipose tissue, lipin-mediated PA phosphohydrolase activity is far from limiting for normal rates of triglyceride synthesis, but rather impacts critical signaling cascades that control cellular homeostasis. In this review, we will discuss how lipin-mediated control of PA concentrations regulates metabolism and signaling in mammalian organisms. Keywords: phosphatidic acid; diacylglycerol; lipin; signaling 1. Introduction Foundational work many decades ago by the laboratory of Dr. Eugene Kennedy defined the four sequential enzymatic steps by which three fatty acyl groups were esterified onto the glycerol-3-phosphate backbone to synthesize triglyceride [1].
    [Show full text]
  • The Metabolic Serine Hydrolases and Their Functions in Mammalian Physiology and Disease Jonathan Z
    REVIEW pubs.acs.org/CR The Metabolic Serine Hydrolases and Their Functions in Mammalian Physiology and Disease Jonathan Z. Long* and Benjamin F. Cravatt* The Skaggs Institute for Chemical Biology and Department of Chemical Physiology, The Scripps Research Institute, 10550 North Torrey Pines Road, La Jolla, California 92037, United States CONTENTS 2.4. Other Phospholipases 6034 1. Introduction 6023 2.4.1. LIPG (Endothelial Lipase) 6034 2. Small-Molecule Hydrolases 6023 2.4.2. PLA1A (Phosphatidylserine-Specific 2.1. Intracellular Neutral Lipases 6023 PLA1) 6035 2.1.1. LIPE (Hormone-Sensitive Lipase) 6024 2.4.3. LIPH and LIPI (Phosphatidic Acid-Specific 2.1.2. PNPLA2 (Adipose Triglyceride Lipase) 6024 PLA1R and β) 6035 2.1.3. MGLL (Monoacylglycerol Lipase) 6025 2.4.4. PLB1 (Phospholipase B) 6035 2.1.4. DAGLA and DAGLB (Diacylglycerol Lipase 2.4.5. DDHD1 and DDHD2 (DDHD Domain R and β) 6026 Containing 1 and 2) 6035 2.1.5. CES3 (Carboxylesterase 3) 6026 2.4.6. ABHD4 (Alpha/Beta Hydrolase Domain 2.1.6. AADACL1 (Arylacetamide Deacetylase-like 1) 6026 Containing 4) 6036 2.1.7. ABHD6 (Alpha/Beta Hydrolase Domain 2.5. Small-Molecule Amidases 6036 Containing 6) 6027 2.5.1. FAAH and FAAH2 (Fatty Acid Amide 2.1.8. ABHD12 (Alpha/Beta Hydrolase Domain Hydrolase and FAAH2) 6036 Containing 12) 6027 2.5.2. AFMID (Arylformamidase) 6037 2.2. Extracellular Neutral Lipases 6027 2.6. Acyl-CoA Hydrolases 6037 2.2.1. PNLIP (Pancreatic Lipase) 6028 2.6.1. FASN (Fatty Acid Synthase) 6037 2.2.2. PNLIPRP1 and PNLIPR2 (Pancreatic 2.6.2.
    [Show full text]
  • Overexpression of Hormone-Sensitive Lipase Prevents Triglyceride Accumulation in Adipocytes
    Overexpression of hormone-sensitive lipase prevents triglyceride accumulation in adipocytes. C Sztalryd, … , M C Komaromy, F B Kraemer J Clin Invest. 1995;95(6):2652-2661. https://doi.org/10.1172/JCI117967. Research Article Hormone-sensitive lipase (HSL) is a cytosolic neutral lipase that hydrolyzes intracellular stores of triglycerides within adipocytes and is thought to be the rate limiting enzyme in lipolysis; however, direct evidence to prove this concept has been lacking. The present study was designed to establish the function of HSL in adipocytes. A 2360-bp fragment containing the entire HSL coding region was cloned into the vector pCEP4 and was used to transfect the 3T3-F442A adipogenic cell line. Nondifferentiated, transfected cells were screened for HSL overexpression by indirect immunofluorescence microscopy and confirmed by immunoblotting cell extracts with anti-HSL/fusion protein antibodies and by Northern blots for HSL mRNA. Stable transfectants overexpressing HSL were obtained and cloned. Compared with undifferentiated 3T3-F442A cells transfected with pCEP4 not containing the insert (vector alone) where HSL expression was very low, undifferentiated HSL transfectants had up to a 100-fold increase in HSL activity. Likewise, immunoreactive HSL protein and HSL mRNA levels were increased up to 100-fold in HSL transfectants. When confluent cells were allowed to differentiate by exposure to insulin, HSL expression increased in vector alone transfected cells, but remained below that observed in HSL transfectants. A similar degree of differentiation was seen in both vector alone and HSL transfectants when based on the induction of lipoprotein lipase. Cellular triglyceride content increased dramatically in the vector alone transfected cells […] Find the latest version: https://jci.me/117967/pdf Overexpression of Hormone-sensitive Lipase Prevents Triglyceride Accumulation in Adipocytes Carole Sztalryd, Michael C.
    [Show full text]
  • Aprioritized Panel of Candidate Genes
    In: Advances in Genetics Research. Volume 9 ISBN: 978-1- 62081-466-6 Editor: Kevin V. Urbano © 2012 Nova Science Publishers, Inc No part of this digital document may be reproduced, stored in a retrieval system or transmitted commercially in any form or by any means. The publisher has taken reasonable care in the preparation of this digital document, but makes no expressed or implied warranty of any kind and assumes no responsibility for any errors or omissions. No liability is assumed for incidental or consequential damages in connection with or arising out of information contained herein. This digital document is sold with the clear understanding that the publisher is not engaged in rendering legal, medical or any other professional services. Chapter 1 A PRIORITIZED PANEL OF CANDIDATE GENES TO BE EXPLORED FOR ASSOCIATIONS WITH THE BLOOD PRESSURE RESPONSE TO EXERCISE Garrett I. Ash,1,Amanda L. Augeri,2John D. Eicher,3 Michael L. Bruneau, Jr.1 and Linda S. Pescatello1 1University of Connecticut, Storrs, CT, US 2Hartford Hospital, Hartford, CT, US 3Yale University School of Medicine, New Haven, CT, US ABSTRACT Introduction. Identifying genetic variants associated with the blood pressure (BP) response to exercise is hindered by the lack of standard criteria for candidate gene selection, underpowered samples, and a limited number of conclusive whole genome studies. We developed a prioritized panel of candidate genetic variants that may increase the likelihood of finding genotype associations with the BP response to exercise when used alone or in conjunction with high throughput genotyping studies. Methods. We searched for candidate genetic variants meeting preestablished criteria using PubMed and published systematic reviews.
    [Show full text]
  • Pancreatic Carboxyl Ester Lipase: a Circulating Enzyme That Modifies Normal and Oxidized Lipoproteins in Vitro
    Pancreatic carboxyl ester lipase: a circulating enzyme that modifies normal and oxidized lipoproteins in vitro. R Shamir, … , D W Morel, E A Fisher J Clin Invest. 1996;97(7):1696-1704. https://doi.org/10.1172/JCI118596. Research Article Pancreatic carboxyl ester lipase (CEL) hydrolyzes cholesteryl esters (CE), triglycerides (TG), and lysophospholipids, with CE and TG hydrolysis stimulated by cholate. Originally thought to be confined to the gastrointestinal system, CEL has been reported in the plasma of humans and other mammals, implying its potential in vivo to modify lipids associated with LDL, HDL (CE, TG), and oxidized LDL (lysophosphatidylcholine, lysoPC). We measured the concentration of CEL in human plasma as 1.2+/-0.5 ng/ml (in the range reported for lipoprotein lipase). Human LDL and HDL3 reconstituted with radiolabeled lipids were incubated with purified porcine CEL without or with cholate (10 or 100 microM, concentrations achievable in systemic or portal plasma, respectively). Using a saturating concentration of lipoprotein-associated CE (4 microM), with increasing cholate concentration there was an increase in the hydrolysis of LDL- and HDL3-CE; at 100 microM cholate, the present hydrolysis per hour was 32+/-2 and 1.6+/-0.1, respectively, indicating that CEL interaction varied with lipoprotein class. HDL3-TG hydrolysis was also observed, but was only approximately 5-10% of that for HDL3-CE at either 10 or 100 microM cholate. Oxidized LDL (OxLDL) is enriched with lysoPC, a proatherogenic compound. After a 4-h incubation with CEL, the lysoPC content of OxLDL was depleted 57%. Colocalization of CEL in the vicinity of OxLDL formation was supported by demonstrating in human aortic homogenate a cholate-stimulated […] Find the latest version: https://jci.me/118596/pdf Pancreatic Carboxyl Ester Lipase: A Circulating Enzyme That Modifies Normal and Oxidized Lipoproteins In Vitro Raanan Shamir,*‡ William J.
    [Show full text]
  • Metabolic Regulation by Lipid Activated Receptors by Maxwell A
    Metabolic Regulation by Lipid Activated Receptors By Maxwell A Ruby A dissertation submitted in partial satisfaction of the requirements for the degree of Doctor of Philosophy In Molecular & Biochemical Nutrition In the Graduate Division Of the University of California, Berkeley Committee in charge: Professor Marc K. Hellerstein, Chair Professor Ronald M. Krauss Professor George A. Brooks Professor Andreas Stahl Fall 2010 Abstract Metabolic Regulation by Lipid Activated Receptors By Maxwell Alexander Ruby Doctor of Philosophy in Molecular & Biochemical Nutrition University of California, Berkeley Professor Marc K. Hellerstein, Chair Obesity and related metabolic disorders have reached epidemic levels with dire public health consequences. Efforts to stem the tide focus on behavioral and pharmacological interventions. Several hypolipidemic pharmaceutical agents target endogenous lipid receptors, including the peroxisomal proliferator activated receptor α (PPAR α) and cannabinoid receptor 1 (CB1). To further the understanding of these clinically relevant receptors, we elucidated the biochemical basis of PPAR α activation by lipoprotein lipolysis products and the metabolic and transcriptional responses to elevated endocannabinoid signaling. PPAR α is activated by fatty acids and their derivatives in vitro. While several specific pathways have been implicated in the generation of PPAR α ligands, we focused on lipoprotein lipase mediated lipolysis of triglyceride rich lipoproteins. Fatty acids activated PPAR α similarly to VLDL lipolytic products. Unbound fatty acid concentration determined the extent of PPAR α activation. Lipolysis of VLDL, but not physiological unbound fatty acid concentrations, created the fatty acid uptake necessary to stimulate PPAR α. Consistent with a role for vascular lipases in the activation of PPAR α, administration of a lipase inhibitor (p-407) prevented PPAR α dependent induction of target genes in fasted mice.
    [Show full text]
  • (12) Patent Application Publication (10) Pub. No.: US 2003/0198970 A1 Roberts (43) Pub
    US 2003O19897OA1 (19) United States (12) Patent Application Publication (10) Pub. No.: US 2003/0198970 A1 Roberts (43) Pub. Date: Oct. 23, 2003 (54) GENOSTICS clinical trials on groups or cohorts of patients. This group data is used to derive a Standardised method of treatment (75) Inventor: Gareth Wyn Roberts, Cambs (GB) which is Subsequently applied on an individual basis. There is considerable evidence that a significant factor underlying Correspondence Address: the individual variability in response to disease, therapy and FINNEGAN, HENDERSON, FARABOW, prognosis lies in a person's genetic make-up. There have GARRETT & DUNNER been numerous examples relating that polymorphisms LLP within a given gene can alter the functionality of the protein 1300 ISTREET, NW encoded by that gene thus leading to a variable physiological WASHINGTON, DC 20005 (US) response. In order to bring about the integration of genomics into medical practice and enable design and building of a (73) Assignee: GENOSTIC PHARMA LIMITED technology platform which will enable the everyday practice (21) Appl. No.: 10/206,568 of molecular medicine a way must be invented for the DNA Sequence data to be aligned with the identification of genes (22) Filed: Jul. 29, 2002 central to the induction, development, progression and out come of disease or physiological States of interest. Accord Related U.S. Application Data ing to the invention, the number of genes and their configu rations (mutations and polymorphisms) needed to be (63) Continuation of application No. 09/325,123, filed on identified in order to provide critical clinical information Jun. 3, 1999, now abandoned. concerning individual prognosis is considerably less than the 100,000 thought to comprise the human genome.
    [Show full text]
  • Dietary Effects of Arachidonate-Rich
    Lipids in Health and Disease BioMed Central Research1 Lipids2002, in Health and Disease x Open Access Dietary effects of arachidonate-rich fungal oil and fish oil on murine hepatic and hippocampal gene expression Alvin Berger1,5, David M Mutch1,3, J Bruce German2,4 and Matthew A Roberts*1 Address: 1Metabolic and Genomic Regulation, Nestlé Research Center, Vers-chez-les-Blanc, CH-1000 Lausanne 26, Switzerland, 2External Scientific Network, Nestlé Research Center, Vers-chez-les-Blanc, CH-1000 Lausanne 26, Switzerland, 3Institut de Biologie Animale, Université de Lausanne, CH-1015 Lausanne, Switzerland, 4Department of Food Science, University of California, Davis, CA 95616, USA and 5Current Address: Cytochroma, Inc., Manager Lipidomics™, 330 Cochrane Drive, Markham, Ontario, Canada E-mail: Alvin Berger - [email protected]; David M Mutch - [email protected]; J Bruce German - [email protected]; Matthew A Roberts* - [email protected] *Corresponding author Published: 21 October 2002 Received: 10 October 2002 Accepted: 21 October 2002 Lipids in Health and Disease 2002, 1:2 This article is available from: http://www.Lipidworld.com/content/1/1/2 © 2002 Berger et al; licensee BioMed Central Ltd. This article is published in Open Access: verbatim copying and redistribution of this article are permitted in all media for any purpose, provided this notice is preserved along with the article's original URL. Keywords: arachidonic acid, docosahexaenoic acid, fatty acid, hippocampus, liver, mice, microarray, PPAR, SREBP, transcription Abstract Background: The functions, actions, and regulation of tissue metabolism affected by the consumption of long chain polyunsaturated fatty acids (LC-PUFA) from fish oil and other sources remain poorly understood; particularly how LC-PUFAs affect transcription of genes involved in regulating metabolism.
    [Show full text]
  • UC Davis UC Davis Previously Published Works
    UC Davis UC Davis Previously Published Works Title Genome-wide isolation of growth and obesity QTL using mouse speed congenic strains. Permalink https://escholarship.org/uc/item/2th5940j Journal BMC genomics, 7(1) ISSN 1471-2164 Authors Farber, Charles R Corva, Pablo M Medrano, Juan F Publication Date 2006-05-02 DOI 10.1186/1471-2164-7-102 Peer reviewed eScholarship.org Powered by the California Digital Library University of California BMC Genomics BioMed Central Research article Open Access Genome-wide isolation of growth and obesity QTL using mouse speed congenic strains Charles R Farber1, Pablo M Corva2 and Juan F Medrano*1 Address: 1Department of Animal Science, University of California Davis, One Shields Ave, Davis, CA 95016-8521, USA and 2Department of Animal Science, University of Mar del Plata, CC 276, 7620 Balcarce, Argentina Email: Charles R Farber - [email protected]; Pablo M Corva - [email protected]; Juan F Medrano* - [email protected] * Corresponding author Published: 02 May 2006 Received: 24 September 2005 Accepted: 02 May 2006 BMC Genomics 2006, 7:102 doi:10.1186/1471-2164-7-102 This article is available from: http://www.biomedcentral.com/1471-2164/7/102 © 2006 Farber et al; licensee BioMed Central Ltd. This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. Abstract Background: High growth (hg) modifier and background independent quantitative trait loci (QTL) affecting growth, adiposity and carcass composition were previously identified on mouse chromosomes (MMU) 1, 2, 5, 8, 9, 11 and 17.
    [Show full text]
  • Quantitative Genetic Methods to Dissect Heterogeneity in Complex Traits
    Virginia Commonwealth University VCU Scholars Compass Theses and Dissertations Graduate School 2012 Quantitative Genetic Methods to Dissect Heterogeneity in Complex Traits T. Bernard Bigdeli Virginia Commonwealth University Follow this and additional works at: https://scholarscompass.vcu.edu/etd Part of the Medical Genetics Commons © The Author Downloaded from https://scholarscompass.vcu.edu/etd/2651 This Dissertation is brought to you for free and open access by the Graduate School at VCU Scholars Compass. It has been accepted for inclusion in Theses and Dissertations by an authorized administrator of VCU Scholars Compass. For more information, please contact [email protected]. Quantitative Genetic Methods to Dissect Heterogeneity in Complex Traits by Tim Bernard Bigdeli Adissertationsubmittedinpartialfulfillment of the requirements for the degree of Ph.D. in Human and Molecular Genetics Medical College of Virginia of Virginia Commonwealth University 17 Nov 2011 Doctoral Committee: Michael C. Neale, Ph.D. & Brion S. Maher, Ph.D. (Co-chairs) Dr. Danielle M. Dick Dr. Ayman H. Fanous Dr. Kenneth S. Kendler Dr. Brien P. Riley TABLE OF CONTENTS ABSTRACT ................................... v CHAPTER I. Introduction & Relevant Background ............... 1 1.1 SingleNucleotidePolymorphisms . 1 1.2 AssociationBetweenaSNPandDiseaseOutcome . 2 1.3 Family-BasedApproachestoAssociation. 6 1.4 Multi-locus Diversity and Linkage Disequilibrium Mapping . 7 1.5 Complex, common human disease . 9 1.5.1 Multifactorial Inheritance . 9 1.5.2 Schizophrenia . 9 1.6 GWAS,Multiple-Testing . 10 II. Empirical Significance for Single Marker Tests of Low-Frequency Variants ................................. 12 2.1 Abstract ............................. 12 2.2 Introduction . 14 2.3 Methods . 15 2.3.1 TestsofAssociation . 15 2.3.2 Generation of Asymptotic Distributions .
    [Show full text]
  • Bacterial Hormone-Sensitive Lipases (Bhsls): Emerging Enzymes for Biotechnological Applications T
    J. Microbiol. Biotechnol. (2017), 27(11), 1907–1915 https://doi.org/10.4014/jmb.1708.08004 Research Article Review jmb Bacterial Hormone-Sensitive Lipases (bHSLs): Emerging Enzymes for Biotechnological Applications T. Doohun Kim* Department of Chemistry, College of Natural Science, Sookmyung Women’s University, Seoul 04310, Republic of Korea Received: August 3, 2017 Revised: September 11, 2017 Lipases are important enzymes with biotechnological applications in dairy, detergent, food, Accepted: September 16, 2017 fine chemicals, and pharmaceutical industries. Specifically, hormone-sensitive lipase (HSL) is First published online an intracellular lipase that can be stimulated by several hormones, such as catecholamine, October 14, 2017 glucagon, and adrenocorticotropic hormone. Bacterial hormone-sensitive lipases (bHSLs), *Corresponding author which are homologous to the C-terminal domain of HSL, have α/β-hydrolase fold with a Phone: +82-2-2077-7806; catalytic triad composed of His, Asp, and Ser. These bHSLs could be used for a wide variety of Fax: +82-2-2077-7321; E-mail: doohunkim@sookmyung. industrial applications because of their high activity, broad substrate specificity, and ac.kr remarkable stability. In this review, the relationships among HSLs, the microbiological origins, the crystal structures, and the biotechnological properties of bHSLs are summarized. pISSN 1017-7825, eISSN 1738-8872 Keywords: Hormone-sensitive lipase, cap domain, promiscuity, substrate specificities, Copyright© 2017 by The Korean Society for Microbiology industrial
    [Show full text]