Plant Nomenclature and Taxonomy an Horticultural and Agronomic Perspective
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Glossary - Cellbiology
1 Glossary - Cellbiology Blotting: (Blot Analysis) Widely used biochemical technique for detecting the presence of specific macromolecules (proteins, mRNAs, or DNA sequences) in a mixture. A sample first is separated on an agarose or polyacrylamide gel usually under denaturing conditions; the separated components are transferred (blotting) to a nitrocellulose sheet, which is exposed to a radiolabeled molecule that specifically binds to the macromolecule of interest, and then subjected to autoradiography. Northern B.: mRNAs are detected with a complementary DNA; Southern B.: DNA restriction fragments are detected with complementary nucleotide sequences; Western B.: Proteins are detected by specific antibodies. Cell: The fundamental unit of living organisms. Cells are bounded by a lipid-containing plasma membrane, containing the central nucleus, and the cytoplasm. Cells are generally capable of independent reproduction. More complex cells like Eukaryotes have various compartments (organelles) where special tasks essential for the survival of the cell take place. Cytoplasm: Viscous contents of a cell that are contained within the plasma membrane but, in eukaryotic cells, outside the nucleus. The part of the cytoplasm not contained in any organelle is called the Cytosol. Cytoskeleton: (Gk. ) Three dimensional network of fibrous elements, allowing precisely regulated movements of cell parts, transport organelles, and help to maintain a cell’s shape. • Actin filament: (Microfilaments) Ubiquitous eukaryotic cytoskeletal proteins (one end is attached to the cell-cortex) of two “twisted“ actin monomers; are important in the structural support and movement of cells. Each actin filament (F-actin) consists of two strands of globular subunits (G-Actin) wrapped around each other to form a polarized unit (high ionic cytoplasm lead to the formation of AF, whereas low ion-concentration disassembles AF). -
Liliaceae S.L. (Lily Family)
Liliaceae s.l. (Lily family) Photo: Ben Legler Photo: Hannah Marx Photo: Hannah Marx Lilium columbianum Xerophyllum tenax Trillium ovatum Liliaceae s.l. (Lily family) Photo: Yaowu Yuan Fritillaria lanceolata Ref.1 Textbook DVD KRR&DLN Erythronium americanum Allium vineale Liliaceae s.l. (Lily family) Herbs; Ref.2 Stems often modified as underground rhizomes, corms, or bulbs; Flowers actinomorphic; 3 sepals and 3 petals or 6 tepals, 6 stamens, 3 carpels, ovary superior (or inferior). Tulipa gesneriana Liliaceae s.l. (Lily family) “Liliaceae” s.l. (sensu lato: “in the broad sense”) - Lily family; 288 genera/4950 species, including Lilium, Allium, Trillium, Tulipa; This family is treated in a very broad sense in this class, as in the Flora of the Pacific Northwest. The “Liliaceae” s.l. taught in this class is not monophyletic. It is apparent now that the family should be treated in a narrower sense and some of the members should form their own families. Judd et al. recognize 15+ families: Agavaceae, Alliaceae, Amarylidaceae, Asparagaceae, Asphodelaceae, Colchicaceae, Dracaenaceae (Nolinaceae), Hyacinthaceae, Liliaceae, Melanthiaceae, Ruscaceae, Smilacaceae, Themidaceae, Trilliaceae, Uvulariaceae and more!!! (see web reading “Consider the Lilies”) Iridaceae (Iris family) Photo: Hannah Marx Photo: Hannah Marx Iris pseudacorus Iridaceae (Iris family) Photo: Yaowu Yuan Photo: Yaowu Yuan Sisyrinchium douglasii Sisyrinchium sp. Iridaceae (Iris family) Iridaceae - 78 genera/1750 species, Including Iris, Gladiolus, Sisyrinchium. Herbs, aquatic or terrestrial; Underground stems as rhizomes, bulbs, or corms; Leaves alternate, 2-ranked and equitant Ref.3 (oriented edgewise to the stem; Gladiolus italicus Flowers actinomorphic or zygomorphic; 3 sepals and 3 petals or 6 tepals; Stamens 3; Ovary of 3 fused carpels, inferior. -
THE EVOLUTION of SEED MORPHOLOGY in DOMESTICATED Chenopodium: an ARCHAEOLOGICAL CASE STUDY
]. Ethnobiol. 13(2):149-169 Winter 1993 THE EVOLUTION OF SEED MORPHOLOGY IN DOMESTICATED Chenopodium: AN ARCHAEOLOGICAL CASE STUDY KRISTEN }. GREMILLION Department of Anthropology The Ohio Stute University Columbus, OH 43210-1364 ABSTRACf.-A large body of data on several key morphological characters has been compiled through examination of collections of archaeological Chenopodium from eastern North America. Contrary to expectations based on change in certain other seed crops, the patterns of variation observed in Chenopodium do not reflect a gradual evolution of seed morphology away from the wild type. Evidence for decreasing levels of morphological variability in the evolving domesticate is like wise minimal. These findings demonstrate that the rate and character of crop evolution as revealed in the archaeological record can be expected to vary consid erably among taxa. RESUMEN.-Se ha compilado un extenso ouerpo de datos sobre varios carac teres morfol6gicos clave mediante el examen de colecciones de Chenopodium arqueol6gico del este de Norteamerica. Contrariamente a las expectativas basadas en el cambio en ciertos otms cultivos de semilla, los patrones de variaci6n obser vados en Chenopodium no reflejan una evoluci6n gradual de la morfologia de las semillas en credente distancia del tipo silvestre. La evidencia de niveles decre cientes de variabilidad morfol6gica en la especie domesticada en evoluci6n es asimismo minima. Estos resultados demuestran que puede esperarse que la 13sa y el caracter de la evoluci6n de los cultivos, tal y como se revela en el registro arqueol6gico, varien considerablemente entre taxa distintos. REsUME.-Un large ensemble de donnees concernant plusieurs characteres mor phologiques importants a ete recueilli en examinant des collections de Cheno podium de I'est de I' Amerique. -
A Report on the Fourth Botanical Nomenclature Course Organized by the Botanical Survey of India at Shillong
A REPORT ON THE FOURTH BOTANICAL NOMENCLATURE COURSE ORGANIZED BY THE BOTANICAL SURVEY OF INDIA AT SHILLONG P. LAKSHMINARASIMHAN,1 N. ODYUO,2 CHAYA DEORI,2 DEEPU VIJAYAN,2 DAVID L. BIATE,2 AND KANCHI N. GANDHI3 The Botanical Survey of India (BSI) held its fourth al., 2018) and a user’s guide to the International Code of Botanical Nomenclature Course on January 27–31, 2020 Nomenclature (Turland, 2019). at BSI-Eastern Regional Centre (BSI-ERC), Shillong. The Chaya Deori (BSI-ERC) anchored the inaugural activities. course drew 66 participants from across the country, including Odyuo gave a welcome speech, followed by remarks 45 from outside BSI (Fig. 1). Ashiho A. Mao, director of BSI, from Lakshminarasimhan, Gandhi, and chief guest Mao. was the convener of the course; P. Lakshminarasimhan, ex- Rajalakshmi Prasad and Anupama Jayasimha (former joint director of BSI, and Nripemo Odyuo, head, BSI-ERC, students of Gandhi’s at National College, Bengaluru) were served as the coordinator and facilitator, respectively. Kanchi the guests of honor. Uma Shankar (North-Eastern Hill N. Gandhi served as the course director. Participants were University, Shillong) also attended the inaugural function. provided with the latest International Code of Nomenclature Gandhi began the course with a historical review of for algae, fungi, and plants (Shenzhen Code; Turland et botanical nomenclature. He provided a detailed review of FIGURE 1. Fourth Botanical Nomenclature Course organized by the Botanical Survey of India at Shillong. Delegates of the course. We thank A. R. Brach (A, GH) for helpful suggestions on the text, C. M. Gallagher, and D. -
Reproduction in Plants Which But, She Has Never Seen the Seeds We Shall Learn in This Chapter
Reproduction in 12 Plants o produce its kind is a reproduction, new plants are obtained characteristic of all living from seeds. Torganisms. You have already learnt this in Class VI. The production of new individuals from their parents is known as reproduction. But, how do Paheli thought that new plants reproduce? There are different plants always grow from seeds. modes of reproduction in plants which But, she has never seen the seeds we shall learn in this chapter. of sugarcane, potato and rose. She wants to know how these plants 12.1 MODES OF REPRODUCTION reproduce. In Class VI you learnt about different parts of a flowering plant. Try to list the various parts of a plant and write the Asexual reproduction functions of each. Most plants have In asexual reproduction new plants are roots, stems and leaves. These are called obtained without production of seeds. the vegetative parts of a plant. After a certain period of growth, most plants Vegetative propagation bear flowers. You may have seen the It is a type of asexual reproduction in mango trees flowering in spring. It is which new plants are produced from these flowers that give rise to juicy roots, stems, leaves and buds. Since mango fruit we enjoy in summer. We eat reproduction is through the vegetative the fruits and usually discard the seeds. parts of the plant, it is known as Seeds germinate and form new plants. vegetative propagation. So, what is the function of flowers in plants? Flowers perform the function of Activity 12.1 reproduction in plants. Flowers are the Cut a branch of rose or champa with a reproductive parts. -
Protect Oak Tree Seedlings from Browsing Using Paper Bud Caps
Field Tip #13 May 2013 PROTECT OAK TREE SEEDLINGS FROM BROWSING USING PAPER BUD CAPS By Doug Hecker, Silviculture Program Forester - Sandstone Depredation by deer on planted and natural oak tree seedlings can be a severe problem. Repeated browsing will restrict growth dramatically, creating very deformed seedlings and saplings, repeated dieback and re-sprouting, and even mortality. After many years of effort to control browsing using balloons, tree shelters, repellants, fencing, and dry wall joint tape, a successful technique, using 4” x 4” bud cap paper, was developed to protect hardwood seedlings. Although effective 65 to 75% of the time, balloons can have negative effects on about one-third of the trees, causing dieback on the terminal bud. A lateral bud then takes over as the new terminal bud, sometimes deforming the shape of the tree. Balloons need to be applied only when conditions are Figure 1: 4 x 4 inch piece of bud cap paper dry. If they are applied after a rain or even a heavy morning due, the terminal bud can rot, and die back. Oak should be bud capped in October, after the leaves have started to senesce; at the point where the leaf starts to turn red, before dropping, or easily pulls off without damaging the leaf cuticle or stem of the tree. This period is usually during the first three weeks of October, before the leaves drop. The seedlings can be capped after leaf drop, however it is easier for crews to identify oak seedlings while the leaves are still on. Oaks tend to retain their leaves even after they change color and become dormant. -
Alyssum) and the Correct Name of the Goldentuft Alyssum
ARNOLDIA VE 1 A continuation of the BULLETIN OF POPULAR INFORMATION of the Arnold Arboretum, Harvard University VOLUME 26 JUNE 17, 1966 NUMBERS 6-7 ORNAMENTAL MADWORTS (ALYSSUM) AND THE CORRECT NAME OF THE GOLDENTUFT ALYSSUM of the standard horticultural reference works list the "Madworts" as MANYa group of annuals, biennials, perennials or subshrubs in the family Cru- ciferae, which with the exception of a few species, including the goldentuft mad- wort, are not widely cultivated. The purposes of this article are twofold. First, to inform interested gardeners, horticulturists and plantsmen that this exception, with a number of cultivars, does not belong to the genus Alyssum, but because of certain critical and technical characters, should be placed in the genus Aurinia of the same family. The second goal is to emphasize that many species of the "true" .~lyssum are notable ornamentals and merit greater popularity and cul- tivation. The genus Alyssum (now containing approximately one hundred and ninety species) was described by Linnaeus in 1753 and based on A. montanum, a wide- spread European species which is cultivated to a limited extent only. However, as medicinal and ornamental garden plants the genus was known in cultivation as early as 1650. The name Alyssum is of Greek derivation : a meaning not, and lyssa alluding to madness, rage or hydrophobia. Accordingly, the names Mad- wort and Alyssum both refer to the plant’s reputation as an officinal herb. An infu- sion concocted from the leaves and flowers was reputed to have been administered as a specific antidote against madness or the bite of a rabid dog. -
Botanical Nomenclature: Concept, History of Botanical Nomenclature
Module – 15; Content writer: AvishekBhattacharjee Module 15: Botanical Nomenclature: Concept, history of botanical nomenclature (local and scientific) and its advantages, formation of code. Content writer: Dr.AvishekBhattacharjee, Central National Herbarium, Botanical Survey of India, P.O. – B. Garden, Howrah – 711 103. Module – 15; Content writer: AvishekBhattacharjee Botanical Nomenclature:Concept – A name is a handle by which a mental image is passed. Names are just labels we use to ensure we are understood when we communicate. Nomenclature is a mechanism for unambiguous communication about the elements of taxonomy. Botanical Nomenclature, i.e. naming of plants is that part of plant systematics dealing with application of scientific names to plants according to some set rules. It is related to, but distinct from taxonomy. A botanical name is a unique identifier to which information of a taxon can be attached, thus enabling the movement of data across languages, scientific disciplines, and electronic retrieval systems. A plant’s name permits ready summarization of information content of the taxon in a nested framework. A systemofnamingplantsforscientificcommunicationmustbe international inscope,andmustprovideconsistencyintheapplicationof names.Itmustalsobeacceptedbymost,ifnotall,membersofthe scientific community. These criteria led, almost inevitably, to International Botanical Congresses (IBCs) being the venue at which agreement on a system of scientific nomenclature for plants was sought. The IBCs led to publication of different ‘Codes’ which embodied the rules and regulations of botanical nomenclature and the decisions taken during these Congresses. Advantages ofBotanical Nomenclature: Though a common name may be much easier to remember, there are several good reasons to use botanical names for plant identification. Common names are not unique to a specific plant. -
Establishment of a Global Network for the in Situ Conservation of Crop Wild Relatives: Status and Needs
THEMATIC BACKGROUND STUDY Establishment of a Global Network for the In Situ Conservation of Crop Wild Relatives: Status and Needs Nigel Maxted and Shelagh Kell BACKGROUND STUDY PAPER NO. 39 October 2009 COMMISSION ON GENETIC RESOURCES FOR FOOD AND AGRICULTURE ESTABLISHMENT OF A GLOBAL NETWORK FOR THE IN SITU CONSERVATION OF CROP WILD RELATIVES: STATUS AND NEEDS by *By Nigel Maxted and Shelagh Kell The content of this document is entirely the responsibility of the authors, and does not .necessarily represent the views of the FAO, or its Members 2 * School of Biosciences, University of Birmingham. Disclaimer The content of this document is entirely the responsibility of the authors, and does not necessarily represent the views of the Food and Agriculture Organization of the United Nations (FAO), or its Members. The designations employed and the presentation of material do not imply the expression of any opinion whatsoever on the part of FAO concerning legal or development status of any country, territory, city or area or of its authorities or concerning the delimitation of its frontiers or boundaries. The mention of specific companies or products of manufacturers, whether or not these have been patented, does not imply that these have been endorsed by FAO in preference to others of a similar nature that are not mentioned. CONTENTS SUMMARY 6 ACKNOWLEDGEMENTS 7 PART 1: INTRODUCTION 8 1.1 Background and scope 8 1.2 The global and local importance of crop wild relatives 10 1.3 Definition of a crop wild relative 12 1.4 Global numbers of crop -
Extensive Chromosomal Variation in a Recently Formed Natural Allopolyploid Species, Tragopogon Miscellus (Asteraceae)
Extensive chromosomal variation in a recently formed natural allopolyploid species, Tragopogon miscellus (Asteraceae) Michael Chestera, Joseph P. Gallaghera, V. Vaughan Symondsb, Ana Veruska Cruz da Silvac,d, Evgeny V. Mavrodievd, Andrew R. Leitche, Pamela S. Soltisd, and Douglas E. Soltisa,1 aDepartment of Biology, University of Florida, Gainesville, FL 32611; bInstitute of Molecular Biosciences, Massey University, Palmerston North, 4442, New Zealand; cEmbrapa Tabuleiros Costeiros, CEP 49025-040, Aracaju-SE, Brazil; dFlorida Museum of Natural History, University of Florida, Gainesville, FL 32611; and eSchool of Biological and Chemical Sciences, Queen Mary University of London, London E1 4NS, United Kingdom Edited by James A. Birchler, University of Missouri, Columbia, MO, and approved December 6, 2011 (received for review July 22, 2011) Polyploidy, or whole genome duplication, has played a major role after whole genome duplication (18). In some cases, the regularity in the evolution of many eukaryotic lineages. Although the of meiosis was found to increase rapidly in experimental neo- prevalence of polyploidy in plants is well documented, the molec- allopolyploids that were initially chromosomally unstable (21, ular and cytological consequences are understood largely from 22); for example, after just five selfed generations, Nicotiana newly formed polyploids (neopolyploids) that have been grown neoallotetraploids displayed bivalent pairing and >99% stainable experimentally. Classical cytological and molecular cytogenetic pollen (22). -
Polyploidy19 Program.Pdf
Preface Yves Van de Peer The study of polyploidy dates back more than 100 years to the work of biologists such as Hugo de Vries and G. Ledyard Stebbins Jr. It has since then been realized that polyploidy is widespread and commonplace in plants. Although polyploidy is much rarer in animals, there are also numerous cases of currently polyploid insects, fishes, amphibians and reptiles. For a long time, ancient polyploidy events, dating back millions of years, were much less well documented and it was not until the advent of genomic technologies that conclusive evidence of ancient whole genome duplications (WGD) events became available and we now have evidence for tens, or even hundreds, of ancient WGD events. Explanations of the short-term success of polyploids are usually centered on the effects of genomic changes and increased genetic variation, which are mediated by changes in gene expression and epigenetic remodeling. Increased genetic variation, together with the direct cytogenetic conse- quences of genome doubling, can potentially affect the morphology and physiology of newly formed polyploids and could lead to alterations of ecologically and envi- ronmentally suitable conditions. For instance, it has repeatedly been proposed that polyploids have increased environmental robustness than do diploids, potentially leading to evolutionary advantages during periods of environmental turmoil. More- over, polyploidy has also sometimes been linked with higher diversification rates. Long(er)-term implications of WGD might be evolutionary innovation and increase in biological complexity by the biased retention of regulatory and developmental genes, which, given time, might diversify in function or cause rewiring of gene regulatory networks. -
Fruits: Kinds and Terms
FRUITS: KINDS AND TERMS THE IMPORTANT PART OF THE LIFE CYCLE OFTEN IGNORED Technically, fruits are the mature ovaries of plants that contain ripe seeds ready for dispersal • Of the many kinds of fruits, there are three basic categories: • Dehiscent fruits that split open to shed their seeds, • Indehiscent dry fruits that retain their seeds and are often dispersed as though they were the seed, and • Indehiscent fleshy fruits that turn color and entice animals to eat them, meanwhile allowing the undigested seeds to pass from the animal’s gut We’ll start with dehiscent fruits. The most basic kind, the follicle, contains a single chamber and opens by one lengthwise slit. The columbine seed pods, three per flower, are follicles A mature columbine follicle Milkweed seed pods are also large follicles. Here the follicle hasn’t yet opened. Here is the milkweed follicle opened The legume is a similar seed pod except it opens by two longitudinal slits, one on either side of the fruit. Here you see seeds displayed from a typical legume. Legumes are only found in the pea family Fabaceae. On this fairy duster legume, you can see the two borders that will later split open. Redbud legumes are colorful before they dry and open Lupine legumes twist as they open, projecting the seeds away from the parent The bur clover modifies its legumes by coiling them and providing them with hooked barbs, only opening later as they dry out. The rattlepods or astragaluses modify their legumes by inflating them for wind dispersal, later opening to shed their seeds.