<I>Hypomyces</I> and Its Original Species
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Development and Evaluation of Rrna Targeted in Situ Probes and Phylogenetic Relationships of Freshwater Fungi
Development and evaluation of rRNA targeted in situ probes and phylogenetic relationships of freshwater fungi vorgelegt von Diplom-Biologin Christiane Baschien aus Berlin Von der Fakultät III - Prozesswissenschaften der Technischen Universität Berlin zur Erlangung des akademischen Grades Doktorin der Naturwissenschaften - Dr. rer. nat. - genehmigte Dissertation Promotionsausschuss: Vorsitzender: Prof. Dr. sc. techn. Lutz-Günter Fleischer Berichter: Prof. Dr. rer. nat. Ulrich Szewzyk Berichter: Prof. Dr. rer. nat. Felix Bärlocher Berichter: Dr. habil. Werner Manz Tag der wissenschaftlichen Aussprache: 19.05.2003 Berlin 2003 D83 Table of contents INTRODUCTION ..................................................................................................................................... 1 MATERIAL AND METHODS .................................................................................................................. 8 1. Used organisms ............................................................................................................................. 8 2. Media, culture conditions, maintenance of cultures and harvest procedure.................................. 9 2.1. Culture media........................................................................................................................... 9 2.2. Culture conditions .................................................................................................................. 10 2.3. Maintenance of cultures.........................................................................................................10 -
Two New Species and a New Chinese Record of Hypocreaceae As Evidenced by Morphological and Molecular Data
MYCOBIOLOGY 2019, VOL. 47, NO. 3, 280–291 https://doi.org/10.1080/12298093.2019.1641062 RESEARCH ARTICLE Two New Species and a New Chinese Record of Hypocreaceae as Evidenced by Morphological and Molecular Data Zhao Qing Zeng and Wen Ying Zhuang State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing, P.R. China ABSTRACT ARTICLE HISTORY To explore species diversity of Hypocreaceae, collections from Guangdong, Hubei, and Tibet Received 13 February 2019 of China were examined and two new species and a new Chinese record were discovered. Revised 27 June 2019 Morphological characteristics and DNA sequence analyses of the ITS, LSU, EF-1a, and RPB2 Accepted 4 July 2019 regions support their placements in Hypocreaceae and the establishments of the new spe- Hypomyces hubeiensis Agaricus KEYWORDS cies. sp. nov. is characterized by occurrence on fruitbody of Hypomyces hubeiensis; sp., concentric rings formed on MEA medium, verticillium-like conidiophores, subulate phia- morphology; phylogeny; lides, rod-shaped to narrowly ellipsoidal conidia, and absence of chlamydospores. Trichoderma subiculoides Trichoderma subiculoides sp. nov. is distinguished by effuse to confluent rudimentary stro- mata lacking of a well-developed flank and not changing color in KOH, subcylindrical asci containing eight ascospores that disarticulate into 16 dimorphic part-ascospores, verticillium- like conidiophores, subcylindrical phialides, and subellipsoidal to rod-shaped conidia. Morphological distinctions between the new species and their close relatives are discussed. Hypomyces orthosporus is found for the first time from China. 1. Introduction Members of the genus are mainly distributed in temperate and tropical regions and economically The family Hypocreaceae typified by Hypocrea Fr. -
(Hypocreales) Proposed for Acceptance Or Rejection
IMA FUNGUS · VOLUME 4 · no 1: 41–51 doi:10.5598/imafungus.2013.04.01.05 Genera in Bionectriaceae, Hypocreaceae, and Nectriaceae (Hypocreales) ARTICLE proposed for acceptance or rejection Amy Y. Rossman1, Keith A. Seifert2, Gary J. Samuels3, Andrew M. Minnis4, Hans-Josef Schroers5, Lorenzo Lombard6, Pedro W. Crous6, Kadri Põldmaa7, Paul F. Cannon8, Richard C. Summerbell9, David M. Geiser10, Wen-ying Zhuang11, Yuuri Hirooka12, Cesar Herrera13, Catalina Salgado-Salazar13, and Priscila Chaverri13 1Systematic Mycology & Microbiology Laboratory, USDA-ARS, Beltsville, Maryland 20705, USA; corresponding author e-mail: Amy.Rossman@ ars.usda.gov 2Biodiversity (Mycology), Eastern Cereal and Oilseed Research Centre, Agriculture & Agri-Food Canada, Ottawa, ON K1A 0C6, Canada 3321 Hedgehog Mt. Rd., Deering, NH 03244, USA 4Center for Forest Mycology Research, Northern Research Station, USDA-U.S. Forest Service, One Gifford Pincheot Dr., Madison, WI 53726, USA 5Agricultural Institute of Slovenia, Hacquetova 17, 1000 Ljubljana, Slovenia 6CBS-KNAW Fungal Biodiversity Centre, Uppsalalaan 8, 3584 CT Utrecht, The Netherlands 7Institute of Ecology and Earth Sciences and Natural History Museum, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia 8Jodrell Laboratory, Royal Botanic Gardens, Kew, Surrey TW9 3AB, UK 9Sporometrics, Inc., 219 Dufferin Street, Suite 20C, Toronto, Ontario, Canada M6K 1Y9 10Department of Plant Pathology and Environmental Microbiology, 121 Buckhout Laboratory, The Pennsylvania State University, University Park, PA 16802 USA 11State -
Tropical Species of Cladobotryum and Hypomyces Producing Red Pigments
available online at www.studiesinmycology.org StudieS in Mycology 68: 1–34. 2011. doi:10.3114/sim.2011.68.01 Tropical species of Cladobotryum and Hypomyces producing red pigments Kadri Põldmaa Institute of Ecology and Earth Sciences, and Natural History Museum, University of Tartu, Vanemuise 46, 51014 Tartu, Estonia Correspondence: Kadri Põldmaa, [email protected] Abstract: Twelve species of Hypomyces/Cladobotryum producing red pigments are reported growing in various tropical areas of the world. Ten of these are described as new, including teleomorphs for two previously known anamorphic species. In two species the teleomorph has been found in nature and in three others it was obtained in culture; only anamorphs are known for the rest. None of the studied tropical collections belongs to the common temperate species H. rosellus and H. odoratus to which the tropical teleomorphic collections had previously been assigned. Instead, taxa encountered in the tropics are genetically and morphologically distinct from the nine species of Hypomyces/Cladobotryum producing red pigments known from temperate regions. Besides observed host preferences, anamorphs of several species can spread fast on soft ephemeral agaricoid basidiomata but the slower developing teleomorphs are mostly found on polyporoid basidiomata or bark. While a majority of previous records from the tropics involve collections from Central America, this paper also reports the diversity of these fungi in the Paleotropics. Africa appears to hold a variety of taxa as five of the new species include material collected in scattered localities of this mostly unexplored continent. In examining distribution patterns, most of the taxa do not appear to be pantropical. -
Genome Analysis of Hypomyces Perniciosus, the Causal Agent of Wet Bubble Disease of Button Mushroom (Agaricus Bisporus)
G C A T T A C G G C A T genes Article Genome Analysis of Hypomyces perniciosus, the Causal Agent of Wet Bubble Disease of Button Mushroom (Agaricus bisporus) 1, 1, 1 1, 1,2, Dan Li y, Frederick Leo Sossah y , Lei Sun , Yongping Fu * and Yu Li * 1 Engineering Research Center of Chinese Ministry of Education for Edible and Medicinal Fungi, Jilin Agricultural University, Changchun 130118, China; [email protected] (D.L.); fl[email protected] (F.L.S.); [email protected] (L.S.) 2 International Cooperation Research Center of China for New Germplasm and Breeding of Edible Mushrooms, Jilin Agricultural University, Changchun 130118, China * Correspondence: [email protected] (Y.F.); [email protected] (Y.L.); Tel.: +86-431-8453-2989 (Y.L.) These authors contributed equally to this work. y Received: 4 April 2019; Accepted: 27 May 2019; Published: 29 May 2019 Abstract: The mycoparasitic fungus Hypomyces perniciosus causes wet bubble disease of mushrooms, particularly Agaricus bisporus. The genome of a highly virulent strain of H. perniciosus HP10 was sequenced and compared to three other fungi from the order Hypocreales that cause disease on A. bisporus. H. perniciosus genome is ~44 Mb, encodes 10,077 genes and enriched with transposable elements up to 25.3%. Phylogenetic analysis revealed that H. perniciosus is closely related to Cladobotryum protrusum and diverged from their common ancestor ~156.7 million years ago. H. perniciosus has few secreted proteins compared to C. protrusum and Trichoderma virens, but significantly expanded protein families of transporters, protein kinases, CAZymes (GH 18), peptidases, cytochrome P450, and SMs that are essential for mycoparasitism and adaptation to harsh environments. -
Species of Hypomyces and Nectria Occurring on Discomycetes Author(S): Clark T
Species of Hypomyces and Nectria Occurring on Discomycetes Author(s): Clark T. Rogerson and Gary J. Samuels Source: Mycologia, Vol. 77, No. 5 (Sep. - Oct., 1985), pp. 763-783 Published by: Taylor & Francis, Ltd. Stable URL: http://www.jstor.org/stable/3793285 Accessed: 09-08-2017 17:28 UTC REFERENCES Linked references are available on JSTOR for this article: http://www.jstor.org/stable/3793285?seq=1&cid=pdf-reference#references_tab_contents You may need to log in to JSTOR to access the linked references. JSTOR is a not-for-profit service that helps scholars, researchers, and students discover, use, and build upon a wide range of content in a trusted digital archive. We use information technology and tools to increase productivity and facilitate new forms of scholarship. For more information about JSTOR, please contact [email protected]. Your use of the JSTOR archive indicates your acceptance of the Terms & Conditions of Use, available at http://about.jstor.org/terms Taylor & Francis, Ltd. is collaborating with JSTOR to digitize, preserve and extend access to Mycologia This content downloaded from 93.56.160.3 on Wed, 09 Aug 2017 17:28:22 UTC All use subject to http://about.jstor.org/terms Mycologia, 77(5), 1985, pp. 763-783. ? 1985, by The New York Botanical Garden, Bronx, NY 10458 SPECIES OF HYPOMYCES AND NECTRIA OCCURRING ON DISCOMYCETES Clark T. Rogerson The New York Botanical Garden, Bronx, New York 10458 AND Gary J. Samuels Plant Diseases Division, DSIR, Private Bag, Auckland, New Zealand ABSTRACT Hypomyces papulasporae (synanamorphs = Papulaspora sp., Sibirina sp.), H. papula- sporae var. -
An Overview of the Systematics of the Sordariomycetes Based on a Four-Gene Phylogeny
Mycologia, 98(6), 2006, pp. 1076–1087. # 2006 by The Mycological Society of America, Lawrence, KS 66044-8897 An overview of the systematics of the Sordariomycetes based on a four-gene phylogeny Ning Zhang of 16 in the Sordariomycetes was investigated based Department of Plant Pathology, NYSAES, Cornell on four nuclear loci (nSSU and nLSU rDNA, TEF and University, Geneva, New York 14456 RPB2), using three species of the Leotiomycetes as Lisa A. Castlebury outgroups. Three subclasses (i.e. Hypocreomycetidae, Systematic Botany & Mycology Laboratory, USDA-ARS, Sordariomycetidae and Xylariomycetidae) currently Beltsville, Maryland 20705 recognized in the classification are well supported with the placement of the Lulworthiales in either Andrew N. Miller a basal group of the Sordariomycetes or a sister group Center for Biodiversity, Illinois Natural History Survey, of the Hypocreomycetidae. Except for the Micro- Champaign, Illinois 61820 ascales, our results recognize most of the orders as Sabine M. Huhndorf monophyletic groups. Melanospora species form Department of Botany, The Field Museum of Natural a clade outside of the Hypocreales and are recognized History, Chicago, Illinois 60605 as a distinct order in the Hypocreomycetidae. Conrad L. Schoch Glomerellaceae is excluded from the Phyllachorales Department of Botany and Plant Pathology, Oregon and placed in Hypocreomycetidae incertae sedis. In State University, Corvallis, Oregon 97331 the Sordariomycetidae, the Sordariales is a strongly supported clade and occurs within a well supported Keith A. Seifert clade containing the Boliniales and Chaetosphaer- Biodiversity (Mycology and Botany), Agriculture and iales. Aspects of morphology, ecology and evolution Agri-Food Canada, Ottawa, Ontario, K1A 0C6 Canada are discussed. Amy Y. -
Newly Recognised Lineages of Perithecial Ascomycetes: the New Orders Conioscyphales and Pleurotheciales
Persoonia 37, 2016: 57–81 www.ingentaconnect.com/content/nhn/pimj RESEARCH ARTICLE http://dx.doi.org/10.3767/003158516X689819 Newly recognised lineages of perithecial ascomycetes: the new orders Conioscyphales and Pleurotheciales M. Réblová1, K.A. Seifert 2, J. Fournier 3, V. Štěpánek4 Key words Abstract Phylogenetic analyses of DNA sequences from nuclear ribosomal and protein-coding loci support the placement of several perithecial ascomycetes and dematiaceous hyphomycetes from freshwater and terrestrial freshwater fungi environments in two monophyletic clades closely related to the Savoryellales. One clade formed by five species of holoblastic conidiogenesis Conioscypha and a second clade containing several genera of uncertain taxonomic status centred on Pleurothe- Hypocreomycetidae cium, represent two distinct taxonomic groups at the ordinal systematic rank. They are proposed as new orders, multigene analysis the Conioscyphales and Pleurotheciales. Several taxonomic novelties are introduced in the Pleurotheciales, i.e. Phaeoisaria two new genera (Adelosphaeria and Melanotrigonum), three novel species (A. catenata, M. ovale, Phaeoisaria systematics fasciculata) and a new combination (Pleurotheciella uniseptata). A new combination is proposed for Savoryella limnetica in Ascotaiwania s.str. based on molecular data and culture characters. A strongly supported lineage containing a new genus Plagiascoma, species of Bactrodesmiastrum and Ascotaiwania persoonii, was identified as a sister to the Conioscyphales/Pleurotheciales/Savoryellales clade in our multilocus phylogeny. Together, they are nested in a monophyly in the Hypocreomycetidae, significantly supported by Bayesian inference and Maximum Likelihood analyses. Members of this clade share a few morphological characters, such as the absence of stromatic tissue or clypeus, similar anatomies of the 2-layered ascomatal walls, thin-walled unitunicate asci with a distinct, non-amyloid apical annulus, symmetrical, transversely septate ascospores and holoblastic conidiogenesis. -
A Tribute to Gary J. Samuels
Studies in Mycology 68 (March 2011) Phylogenetic revision of taxonomic concepts in the Hypocreales and other Ascomycota - A tribute to Gary J. Samuels - Amy Rossman and Keith Seifert, editors CBS-KNAW Fungal Biodiversity Centre, Utrecht, The Netherlands An institute of the Royal Netherlands Academy of Arts and Sciences Studies in Mycology The Studies in Mycology is an international journal which publishes systematic monographs of filamentous fungi and yeasts, and in rare occasions the proceedings of special meetings related to all fields of mycology, biotechnology, ecology, molecular biology, pathology and systematics. For instructions for authors see www.cbs.knaw.nl. ExEcutivE Editor Prof. dr dr hc Robert A. Samson, CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] Layout Editor Manon van den Hoeven-Verweij, CBS-KNAW Fungal Biodiversity Centre, P.O. Box 85167, 3508 AD Utrecht, The Netherlands. E-mail: [email protected] SciEntific EditorS Prof. dr Dominik Begerow, Lehrstuhl für Evolution und Biodiversität der Pflanzen, Ruhr-Universität Bochum, Universitätsstr. 150, Gebäude ND 44780, Bochum, Germany. E-mail: [email protected] Prof. dr Uwe Braun, Martin-Luther-Universität, Institut für Biologie, Geobotanik und Botanischer Garten, Herbarium, Neuwerk 21, D-06099 Halle, Germany. E-mail: [email protected] Dr Paul Cannon, CABI and Royal Botanic Gardens, Kew, Jodrell Laboratory, Royal Botanic Gardens, Kew, Richmond, Surrey TW9 3AB, U.K. E-mail: [email protected] Prof. dr Lori Carris, Associate Professor, Department of Plant Pathology, Washington State University, Pullman, WA 99164-6340, U.S.A. -
December 2001 Newsletter of the Mycological Society of America
Supplement to Mycologia Vol. 52(6) December 2001 Newsletter of the Mycological Society of America -- In This Issue -- Interactive Key, Descriptions & Illustrations Hypomycetes On-line ............................. 1-2 for Hypomyces Now On-line ITS Reality ................................................ 2-3 http://nt.ars-grin.gov/taxadescriptions/hypomyces/ UFO Rings and Fungi ............................. 3-6 MSA Official Business by David F. Farr President’s Corner ................................ 6-7 Questions or comments should be sent to David Farr via USDA ARS, Syst. Bot. Council Email Express ............................. 7 & Mycol. Lab., Room 304, Bldg. 011A, Beltsville, MD 20705 or email: <[email protected]>. Important Announcements ...... 8, 21, 22 Awards Announcements/Nominations .... 9-12 R. KADRI POLDMAA, VISITING SCIENTIST from University of Tartu, Annual Council Meeting Minutes .... 13-16 Estonia, with Dr. David Farr and Ms. Erin McCray, USDA- Annual Business Meeting Minutes .. 17-18 DARS Systematic Botany and Mycology Laboratory, have Official Roster 2001-02 .................... 18-21 produced an online interactive key with descriptions and illustrations Foray Lists Requested........................... 22 for the genus Hypomyces (Hypocreales, Hypocreaceae). Species of From the Editor ..................................... 23 Hypomyces and their asexual states in Cladobotryum, Mycogone and Sepedonium are a group of microscopic fungi generally found on the 2001 MSA Award Winners .............. 23-28 fruiting bodies of other fungi. They are characterized by the develop- Forms ment of light or brightly colored perithecia formed in a concolorous Change of Address ............................. 32 subiculum. Endowment & Contributions ............. 41 Detailed descriptions and illustrations are presented for the 30 Gift Membership ............................... 43 species of Hypomyces that represent a majority of the species found Society Membership .......................... 44 in temperate regions. -
The Mycophile 58:3 May/June 2018
Volume 58:3 May-June 2018 www.namyco.org Gary Lincoff (1942-2018) by David Rust, NAMA President Society. Predating his involvement with the club was one of its founders: John Cage, who was also instrumental in founding NAMA. When Lincoff discovered mushrooms, he convinced the New York Botanic Garden to allow him to teach classes, a relationship which lasted over 40 years. In 1978, Gary wrote a book with Colorado mycologist and doctor D.H. Mitchel, Toxic and Hallucinogenic Mushroom Poisoning: A Handbook for Physicians and Mushroom Hunters. The book’s popularity led to publication in 1981 of The Audubon Society Field Guide to North American Mushrooms, a watershed moment for people of all interests in the field of mycology. He organized NAMA's “exotic forays” to far places including Siberia, where he learned firsthand about native uses of Amanita muscaria. Gary led forays in New York every week of the year, no matter the weather. He was a constant participant in events across the nation, including the Annual Gary Lincoff Foray, sponsored by the Western Pennsylvania Mushroom Club. Gary was often the Principal Mycologist at the Mid-Atlantic Mushroom Foray. At last year's Telluride Mushroom Festival, participants in the annual parade honored him by coming as “Gary Lincoff ”, incorporating his standard vest and hat into a costume. Gary Lincoff was the author or editor of num- erous books and articles on mushrooms, including his I'm sad to report the passing of Gary Lincoff, recent publication, The Complete Mushroom Hunter, An a driving force in the early years of NAMA, a Illustrated Guide to Finding, Harvesting, and Enjoying Wild great contributor to amateurs, and a constant Mushrooms. -
An Inventory of Fungal Diversity in Ohio Research Thesis Presented In
An Inventory of Fungal Diversity in Ohio Research Thesis Presented in partial fulfillment of the requirements for graduation with research distinction in the undergraduate colleges of The Ohio State University by Django Grootmyers The Ohio State University April 2021 1 ABSTRACT Fungi are a large and diverse group of eukaryotic organisms that play important roles in nutrient cycling in ecosystems worldwide. Fungi are poorly documented compared to plants in Ohio despite 197 years of collecting activity, and an attempt to compile all the species of fungi known from Ohio has not been completed since 1894. This paper compiles the species of fungi currently known from Ohio based on vouchered fungal collections available in digitized form at the Mycology Collections Portal (MyCoPortal) and other online collections databases and new collections by the author. All groups of fungi are treated, including lichens and microfungi. 69,795 total records of Ohio fungi were processed, resulting in a list of 4,865 total species-level taxa. 250 of these taxa are newly reported from Ohio in this work. 229 of the taxa known from Ohio are species that were originally described from Ohio. A number of potentially novel fungal species were discovered over the course of this study and will be described in future publications. The insights gained from this work will be useful in facilitating future research on Ohio fungi, developing more comprehensive and modern guides to Ohio fungi, and beginning to investigate the possibility of fungal conservation in Ohio. INTRODUCTION Fungi are a large and very diverse group of organisms that play a variety of vital roles in natural and agricultural ecosystems: as decomposers (Lindahl, Taylor and Finlay 2002), mycorrhizal partners of plant species (Van Der Heijden et al.